ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63b01 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 134 bits (338), Expect = 1e-31 Identities = 68/98 (69%), Positives = 76/98 (77%), Gaps = 2/98 (2%) Frame = -3 Query: 499 SGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWS 326 SG KKIKVDKPLG+GGG+ + +D++GRK KGVYQFVDKYGANVDGYSPIY EEW+ Sbjct: 42 SGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVDKYGANVDGYSPIYNEEEWA 101 Query: 325 ESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 +GD YAGGTTGLLIWAVT LVYNTSALA Sbjct: 102 PTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 125 bits (313), Expect = 9e-29 Identities = 63/100 (63%), Positives = 71/100 (71%), Gaps = 2/100 (2%) Frame = -3 Query: 505 VCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEE 332 V SG KK+K DKP G+ G + + +DA+GRK KGVYQ+VDKYGANVDGYSPIY +E Sbjct: 38 VASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDE 97 Query: 331 WSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 WS SGD Y GGTTGL IWAVT LVYNTSALA Sbjct: 98 WSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALA 137
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 125 bits (313), Expect = 9e-29 Identities = 63/100 (63%), Positives = 71/100 (71%), Gaps = 2/100 (2%) Frame = -3 Query: 505 VCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEE 332 V SG KK+K DKP G+ G + + +DA+GRK KGVYQ+VDKYGANVDGYSPIY +E Sbjct: 38 VASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGANVDGYSPIYNTDE 97 Query: 331 WSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 WS SGD Y GGTTGL IWAVT LVYNTSALA Sbjct: 98 WSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 122 bits (306), Expect = 6e-28 Identities = 61/98 (62%), Positives = 71/98 (72%), Gaps = 2/98 (2%) Frame = -3 Query: 499 SGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWS 326 SG KK+K DKP G+ G +++ +DA+GRK KGVYQFVDKYGANVDGYSPIY ++WS Sbjct: 38 SGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVDKYGANVDGYSPIYNTDDWS 97 Query: 325 ESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 SGD Y GGTTGL IWAVT LV+NTSALA Sbjct: 98 PSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 120 bits (300), Expect = 3e-27 Identities = 62/100 (62%), Positives = 69/100 (69%), Gaps = 2/100 (2%) Frame = -3 Query: 505 VCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEE 332 V SG KKIK DKP G+ G + + +DA+GRK GVY+FVDKYGANVDGYSPIY +E Sbjct: 41 VASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYGANVDGYSPIYNEDE 100 Query: 331 WSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 WS SGD Y GG TGL IWAVT LVYNTSALA Sbjct: 101 WSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 118 bits (296), Expect = 8e-27 Identities = 61/100 (61%), Positives = 68/100 (68%), Gaps = 2/100 (2%) Frame = -3 Query: 505 VCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEE 332 V SG KKIK DKP G+ G + + +DA+GRK GVY++VDKYGANVDGYSPIY E Sbjct: 40 VASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVDKYGANVDGYSPIYNENE 99 Query: 331 WSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 WS SGD Y GG TGL IWAVT LVYNTSALA Sbjct: 100 WSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 139
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 116 bits (291), Expect = 3e-26 Identities = 59/100 (59%), Positives = 67/100 (67%), Gaps = 2/100 (2%) Frame = -3 Query: 505 VCSGGKKIKVDKPLGLGGGLTVD--IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEE 332 V KK++ +P G GGG+ +DA+GR KGVYQF DKYGANVDGYSPIYTPEE Sbjct: 38 VAKKAKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEE 97 Query: 331 WSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 212 WS SGD Y GG TGL +WAVT LVY+TSALA Sbjct: 98 WSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -3 Query: 499 SGGKKIKVDKPLGLGGGLTVDIDA 428 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 3.7 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = -3 Query: 505 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 338 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 6.4 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -3 Query: 499 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 350 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 6.4 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -3 Query: 499 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 350 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 28.9 bits (63), Expect = 8.3 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 7/47 (14%) Frame = +3 Query: 360 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLST 479 P T P +T TP PT P+ + +TV P P+P G T Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQT 1941 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,738,811 Number of Sequences: 219361 Number of extensions: 1022727 Number of successful extensions: 3344 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 3139 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3335 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3696665728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
