ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62l24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_188468.1| Oryza sativa (japonica cultivar-group), predic... 119 1e-23
2dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
3dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic D... 119 1e-23
4dbj|AK063270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 1e-23
5ref|XM_423552.1| PREDICTED: Gallus gallus similar to Myeloid/lym... 48 0.032
6ref|NM_172344.1| Homo sapiens potassium voltage-gated channel, s... 44 0.49
7ref|NM_133329.4| Homo sapiens potassium voltage-gated channel, s... 44 0.49
8gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 44 0.49
9ref|XM_368522.1| Magnaporthe grisea 70-15 chromosome VI hypothet... 44 0.49
10gb|AF454548.1| Homo sapiens voltage-gated potassium channel subu... 44 0.49
11gb|AF454547.1| Homo sapiens voltage-gated potassium channel subu... 44 0.49
12emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome... 44 0.49
13gb|BC071558.1| Homo sapiens potassium voltage-gated channel, sub... 44 0.49
14emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 44 0.49
15emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete ... 44 0.49
16gb|AF348982.1| Homo sapiens voltage-gated potassium channel Kv10... 44 0.49
17dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete ... 44 0.49
18gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, compl... 44 0.49
19dbj|AB070604.1| Homo sapiens KV6.3 mRNA for voltage-gated K+ cha... 44 0.49
20gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
21gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
22ref|XM_414230.1| PREDICTED: Gallus gallus alpha-fetoprotein enha... 42 2.0
23gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
24ref|XM_540164.2| PREDICTED: Canis familiaris similar to potassiu... 42 2.0
25ref|XM_858942.1| PREDICTED: Canis familiaris similar to potassiu... 42 2.0
26gb|AC102016.4| Mus musculus chromosome 5, clone RP24-567O8, comp... 42 2.0
27dbj|AK048585.1| Mus musculus 16 days embryo head cDNA, RIKEN ful... 42 2.0
28dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.0
29gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosom... 42 2.0
30gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 2.0
31ref|XM_550138.1| Oryza sativa (japonica cultivar-group), mRNA 40 7.7
32gb|CP000148.1| Geobacter metallireducens GS-15, complete genome 40 7.7
33ref|NM_014646.2| Homo sapiens lipin 2 (LPIN2), mRNA 40 7.7
34gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 7.7
35gb|AY657773.1| Synthetic construct Peudomonas aeruginosa clone F... 40 7.7
36gb|AC164634.3| Mus musculus BAC clone RP23-64E16 from chromosome... 40 7.7
37emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete ch... 40 7.7
38gb|AC122384.3| Mus musculus BAC clone RP24-63P8 from chromosome ... 40 7.7
39emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete ... 40 7.7
40emb|BX640433.1| Bordetella parapertussis strain 12822, complete ... 40 7.7
41emb|BX640420.1| Bordetella pertussis strain Tohama I, complete g... 40 7.7
42emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.7
43emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete ... 40 7.7
44emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete ... 40 7.7
45emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete ... 40 7.7
46dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 40 7.7
47gb|AF151098.1| Mycobacterium avium FecB precursor (fecB) gene, c... 40 7.7
48dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
49gb|AE004564.1| Pseudomonas aeruginosa PAO1, section 125 of 529 o... 40 7.7
50gb|AE004476.1| Pseudomonas aeruginosa PAO1, section 37 of 529 of... 40 7.7
51gb|AE004447.1| Pseudomonas aeruginosa PAO1, section 8 of 529 of ... 40 7.7
52dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 7.7
53dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.7
54dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
55dbj|D87436.1| Homo sapiens mRNA for KIAA0249 gene, partial cds 40 7.7
56dbj|AK110238.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.7
57dbj|AP000919.6| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 7.7
58gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 40 7.7 
>ref|NM_188468.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1041

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 313  gcgcctcgtcgcggcccagcatcttatcgacgacggccaccgcgtactccatggcggtgc 372
            ||||| |||||||||| |||| ||| |||||| ||||||| ||| |||||||||||||||
Sbjct: 1009 gcgccacgtcgcggccgagcagcttctcgacggcggccacggcgaactccatggcggtgc 950

                                                                    
Query: 373  cggggctcctgctcgtgatcacgttcccgtcaaccaccaccctgttctcgcactcg 428
            ||| ||  | |||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 949  cggtgcctccgctcgtgatcacgttcccatcaaccaccactctgctctcgcactcg 894



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                       
Query: 478 tgcccttgagcaggccatggggctcgagcacatgggcggtggcggcgccgatggcgccgt 537
           |||||| |||||| || ||||||||||||||||| || || |||||||| ||||||||||
Sbjct: 865 tgccctcgagcagaccgtggggctcgagcacatgagccgtcgcggcgccaatggcgccgt 806

                                          
Query: 538 acggcttgttcgcttccgcatgcttcttcag 568
           | |||||| ||||  |||| |||||||||||
Sbjct: 805 agggcttgctcgccgccgcctgcttcttcag 775
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                           
Query: 313     gcgcctcgtcgcggcccagcatcttatcgacgacggccaccgcgtactccatggcggtgc 372
               ||||| |||||||||| |||| ||| |||||| ||||||| ||| |||||||||||||||
Sbjct: 6418662 gcgccacgtcgcggccgagcagcttctcgacggcggccacggcgaactccatggcggtgc 6418603

                                                                       
Query: 373     cggggctcctgctcgtgatcacgttcccgtcaaccaccaccctgttctcgcactcg 428
               ||| ||  | |||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 6418602 cggtgcctccgctcgtgatcacgttcccatcaaccaccactctgctctcgcactcg 6418547



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                           
Query: 485     gagcaggccatggggctcgagcacatgggcggtggcggcgccgatggcgccgtacggctt 544
               |||||| || ||||||||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 6418415 gagcagaccgtggggctcgagcacatgagccgtcgcggcgccaatggcgccgtagggctt 6418356

                                       
Query: 545     gttcgcttccgcatgcttcttcag 568
               | ||||  |||| |||||||||||
Sbjct: 6418355 gctcgccgccgcctgcttcttcag 6418332



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 464     cgtcgtcgccttcctgccct 483
               ||||||||||||||||||||
Sbjct: 2569135 cgtcgtcgccttcctgccct 2569154
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>dbj|AP002861.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0665D10
          Length = 134967

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                         
Query: 313   gcgcctcgtcgcggcccagcatcttatcgacgacggccaccgcgtactccatggcggtgc 372
             ||||| |||||||||| |||| ||| |||||| ||||||| ||| |||||||||||||||
Sbjct: 41057 gcgccacgtcgcggccgagcagcttctcgacggcggccacggcgaactccatggcggtgc 40998

                                                                     
Query: 373   cggggctcctgctcgtgatcacgttcccgtcaaccaccaccctgttctcgcactcg 428
             ||| ||  | |||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 40997 cggtgcctccgctcgtgatcacgttcccatcaaccaccactctgctctcgcactcg 40942



 Score = 79.8 bits (40), Expect = 9e-12
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                         
Query: 485   gagcaggccatggggctcgagcacatgggcggtggcggcgccgatggcgccgtacggctt 544
             |||||| || ||||||||||||||||| || || |||||||| ||||||||||| |||||
Sbjct: 40810 gagcagaccgtggggctcgagcacatgagccgtcgcggcgccaatggcgccgtagggctt 40751

                                     
Query: 545   gttcgcttccgcatgcttcttcag 568
             | ||||  |||| |||||||||||
Sbjct: 40750 gctcgccgccgcctgcttcttcag 40727
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>dbj|AK063270.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-B10, full
            insert sequence
          Length = 1474

 Score =  119 bits (60), Expect = 1e-23
 Identities = 102/116 (87%)
 Strand = Plus / Minus

                                                                        
Query: 313  gcgcctcgtcgcggcccagcatcttatcgacgacggccaccgcgtactccatggcggtgc 372
            ||||| |||||||||| |||| ||| |||||| ||||||| ||| |||||||||||||||
Sbjct: 1269 gcgccacgtcgcggccgagcagcttctcgacggcggccacggcgaactccatggcggtgc 1210

                                                                    
Query: 373  cggggctcctgctcgtgatcacgttcccgtcaaccaccaccctgttctcgcactcg 428
            ||| ||  | |||||||||||||||||| ||||||||||| ||| |||||||||||
Sbjct: 1209 cggtgcctccgctcgtgatcacgttcccatcaaccaccactctgctctcgcactcg 1154



 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 79/91 (86%)
 Strand = Plus / Minus

                                                                        
Query: 478  tgcccttgagcaggccatggggctcgagcacatgggcggtggcggcgccgatggcgccgt 537
            |||||| |||||| || ||||||||||||||||| || || |||||||| ||||||||||
Sbjct: 1125 tgccctcgagcagaccgtggggctcgagcacatgagccgtcgcggcgccaatggcgccgt 1066

                                           
Query: 538  acggcttgttcgcttccgcatgcttcttcag 568
            | |||||| ||||  |||| |||||||||||
Sbjct: 1065 agggcttgctcgccgccgcctgcttcttcag 1035
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>ref|XM_423552.1| PREDICTED: Gallus gallus similar to Myeloid/lymphoid or mixed-lineage
            leukemia protein 2 (ALL1-related protein) (LOC425846),
            partial mRNA
          Length = 3528

 Score = 48.1 bits (24), Expect = 0.032
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                    
Query: 360  tccatggcggtgccggggctcctg 383
            ||||||||||||||||||||||||
Sbjct: 1525 tccatggcggtgccggggctcctg 1502
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>ref|NM_172344.1| Homo sapiens potassium voltage-gated channel, subfamily G, member 3
            (KCNG3), transcript variant 2, mRNA
          Length = 3791

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 312  cgcgcctcgtcgcggcccagca 333
            ||||||||||||||||||||||
Sbjct: 1018 cgcgcctcgtcgcggcccagca 997
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>ref|NM_133329.4| Homo sapiens potassium voltage-gated channel, subfamily G, member 3
            (KCNG3), transcript variant 1, mRNA
          Length = 3824

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 312  cgcgcctcgtcgcggcccagca 333
            ||||||||||||||||||||||
Sbjct: 1018 cgcgcctcgtcgcggcccagca 997
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 514    cggtggcggcgccgatggcgcc 535
              ||||||||||||||||||||||
Sbjct: 362190 cggtggcggcgccgatggcgcc 362211
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>ref|XM_368522.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein
            (MG00722.4) partial mRNA
          Length = 2967

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 512  ggcggtggcggcgccgatggcg 533
            ||||||||||||||||||||||
Sbjct: 1344 ggcggtggcggcgccgatggcg 1323
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>gb|AF454548.1| Homo sapiens voltage-gated potassium channel subunit Kv10.1b mRNA,
           complete cds, alternatively spliced
          Length = 3703

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 cgcgcctcgtcgcggcccagca 333
           ||||||||||||||||||||||
Sbjct: 899 cgcgcctcgtcgcggcccagca 878
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>gb|AF454547.1| Homo sapiens voltage-gated potassium channel subunit Kv10.1a mRNA,
           complete cds, alternatively spliced
          Length = 3670

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 cgcgcctcgtcgcggcccagca 333
           ||||||||||||||||||||||
Sbjct: 899 cgcgcctcgtcgcggcccagca 878
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>emb|BX842573.1| Mycobacterium tuberculosis H37Rv complete genome; segment 2/13
          Length = 342416

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 514   cggtggcggcgccgatggcgcc 535
             ||||||||||||||||||||||
Sbjct: 20221 cggtggcggcgccgatggcgcc 20242
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>gb|BC071558.1| Homo sapiens potassium voltage-gated channel, subfamily G, member
           3, transcript variant 1, mRNA (cDNA clone MGC:86973
           IMAGE:4375480), complete cds
          Length = 3770

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 cgcgcctcgtcgcggcccagca 333
           ||||||||||||||||||||||
Sbjct: 898 cgcgcctcgtcgcggcccagca 877
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>emb|BX248335.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment
             2/14
          Length = 324050

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 514   cggtggcggcgccgatggcgcc 535
             ||||||||||||||||||||||
Sbjct: 20130 cggtggcggcgccgatggcgcc 20151
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>emb|AL939110.1|SCO939110 Streptomyces coelicolor A3(2) complete genome; segment 7/29
          Length = 283100

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 432  tcgtcggcgagcagcccggcca 453
            ||||||||||||||||||||||
Sbjct: 3616 tcgtcggcgagcagcccggcca 3595
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>gb|AF348982.1| Homo sapiens voltage-gated potassium channel Kv10.1 mRNA, complete
            cds
          Length = 1947

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 312  cgcgcctcgtcgcggcccagca 333
            ||||||||||||||||||||||
Sbjct: 1017 cgcgcctcgtcgcggcccagca 996
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>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome
          Length = 4967148

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                     
Query: 456     gatgcgcacgtcgtcgccttcc 477
               ||||||||||||||||||||||
Sbjct: 2091880 gatgcgcacgtcgtcgccttcc 2091901
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>gb|AC025750.10| Homo sapiens BAC clone RP11-804P20 from 2, complete sequence
          Length = 151367

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 312   cgcgcctcgtcgcggcccagca 333
             ||||||||||||||||||||||
Sbjct: 56980 cgcgcctcgtcgcggcccagca 57001
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>dbj|AB070604.1| Homo sapiens KV6.3 mRNA for voltage-gated K+ channel 6.3, complete
           cds
          Length = 1311

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 312 cgcgcctcgtcgcggcccagca 333
           ||||||||||||||||||||||
Sbjct: 422 cgcgcctcgtcgcggcccagca 401
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>gb|AC124151.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBb0019E05, complete sequence
          Length = 129021

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 176  ccagtgaccaccactgttgtc 196
            |||||||||||||||||||||
Sbjct: 9596 ccagtgaccaccactgttgtc 9616
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>gb|AC136786.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0027P09,
              complete sequence
          Length = 171861

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 176    ccagtgaccaccactgttgtc 196
              |||||||||||||||||||||
Sbjct: 167333 ccagtgaccaccactgttgtc 167353
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>ref|XM_414230.1| PREDICTED: Gallus gallus alpha-fetoprotein enhancer-binding protein
            (ATBF1), mRNA
          Length = 10122

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 349  ccaccgcgtactccatggcgg 369
            |||||||||||||||||||||
Sbjct: 9103 ccaccgcgtactccatggcgg 9083
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>gb|AC135398.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
            OSJNBa0079N13, complete sequence
          Length = 140946

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 176  ccagtgaccaccactgttgtc 196
            |||||||||||||||||||||
Sbjct: 9346 ccagtgaccaccactgttgtc 9366
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>ref|XM_540164.2| PREDICTED: Canis familiaris similar to potassium voltage-gated
           channel, subfamily G, member 3 isoform 1, transcript
           variant 1 (LOC483049), mRNA
          Length = 1757

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 312 cgcgcctcgtcgcggcccagc 332
           |||||||||||||||||||||
Sbjct: 422 cgcgcctcgtcgcggcccagc 402
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>ref|XM_858942.1| PREDICTED: Canis familiaris similar to potassium voltage-gated
           channel, subfamily G, member 3 isoform 1, transcript
           variant 2 (LOC483049), mRNA
          Length = 1724

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 312 cgcgcctcgtcgcggcccagc 332
           |||||||||||||||||||||
Sbjct: 422 cgcgcctcgtcgcggcccagc 402
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>gb|AC102016.4| Mus musculus chromosome 5, clone RP24-567O8, complete sequence
          Length = 154115

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 248   tgtgaagctccaccacacggc 268
             |||||||||||||||||||||
Sbjct: 87618 tgtgaagctccaccacacggc 87598
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>dbj|AK048585.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130080K23 product:unclassifiable, full
            insert sequence
          Length = 2566

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 248  tgtgaagctccaccacacggc 268
            |||||||||||||||||||||
Sbjct: 2409 tgtgaagctccaccacacggc 2429
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 176      ccagtgaccaccactgttgtc 196
                |||||||||||||||||||||
Sbjct: 17139560 ccagtgaccaccactgttgtc 17139580



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 176      ccagtgaccaccactgttgtc 196
                |||||||||||||||||||||
Sbjct: 15757652 ccagtgaccaccactgttgtc 15757672
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>gb|AC161384.4| Gallus gallus BAC clone CH261-69B2 from chromosome ul, complete sequence
          Length = 186366

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 360    tccatggcggtgccggggctc 380
              |||||||||||||||||||||
Sbjct: 132022 tccatggcggtgccggggctc 132042
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 176      ccagtgaccaccactgttgtc 196
                |||||||||||||||||||||
Sbjct: 17234746 ccagtgaccaccactgttgtc 17234766



 Score = 42.1 bits (21), Expect = 2.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 176      ccagtgaccaccactgttgtc 196
                |||||||||||||||||||||
Sbjct: 15845029 ccagtgaccaccactgttgtc 15845049
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>ref|XM_550138.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1236

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 464  cgtcgtcgccttcctgccct 483
            ||||||||||||||||||||
Sbjct: 1173 cgtcgtcgccttcctgccct 1154
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>gb|CP000148.1| Geobacter metallireducens GS-15, complete genome
          Length = 3997420

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 510    tgggcggtggcggcgccgatggcg 533
              |||||||||||| |||||||||||
Sbjct: 101337 tgggcggtggcgtcgccgatggcg 101360
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>ref|NM_014646.2| Homo sapiens lipin 2 (LPIN2), mRNA
          Length = 6245

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   agcaaaacacaacacagtac 44
            ||||||||||||||||||||
Sbjct: 5582 agcaaaacacaacacagtac 5563
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 338     atcgacgacggccaccgcgt 357
               ||||||||||||||||||||
Sbjct: 2426801 atcgacgacggccaccgcgt 2426782
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>gb|AY657773.1| Synthetic construct Peudomonas aeruginosa clone FLH045186.01F
           PA0085 gene, partial cds
          Length = 489

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 505 gcacatgggcggtggcggcg 524
           ||||||||||||||||||||
Sbjct: 120 gcacatgggcggtggcggcg 139
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>gb|AC164634.3| Mus musculus BAC clone RP23-64E16 from chromosome 17, complete sequence
          Length = 204253

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 171   gatgaccagtgaccaccact 190
             ||||||||||||||||||||
Sbjct: 88994 gatgaccagtgaccaccact 88975
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>emb|AL591790.1|SME591790 Sinorhizobium meliloti 1021 complete chromosome; segment 9/12
          Length = 323450

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 512    ggcggtggcggcgccgatggcgcc 535
              |||||||||||||||||| |||||
Sbjct: 285017 ggcggtggcggcgccgattgcgcc 285040
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>gb|AC122384.3| Mus musculus BAC clone RP24-63P8 from chromosome 17, complete sequence
          Length = 190880

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 171    gatgaccagtgaccaccact 190
              ||||||||||||||||||||
Sbjct: 173592 gatgaccagtgaccaccact 173611
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>emb|BX640449.1| Bordetella bronchiseptica strain RB50, complete genome; segment 13/16
          Length = 348074

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 302   cgccagtcgccgcgcctcgtcgcggccc 329
             |||||| ||| |||||||||||||||||
Sbjct: 32908 cgccaggcgcagcgcctcgtcgcggccc 32881
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>emb|BX640433.1| Bordetella parapertussis strain 12822, complete genome; segment 11/14
          Length = 349305

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 302    cgccagtcgccgcgcctcgtcgcggccc 329
              |||||| ||| |||||||||||||||||
Sbjct: 335120 cgccaggcgcagcgcctcgtcgcggccc 335093
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>emb|BX640420.1| Bordetella pertussis strain Tohama I, complete genome; segment 10/12
          Length = 348134

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 302    cgccagtcgccgcgcctcgtcgcggccc 329
              |||||| ||| |||||||||||||||||
Sbjct: 178114 cgccaggcgcagcgcctcgtcgcggccc 178141
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 338     atcgacgacggccaccgcgt 357
               ||||||||||||||||||||
Sbjct: 3384655 atcgacgacggccaccgcgt 3384636
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>emb|AL939126.1|SCO939126 Streptomyces coelicolor A3(2) complete genome; segment 23/29
          Length = 295150

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 433    cgtcggcgagcagcccggcc 452
              ||||||||||||||||||||
Sbjct: 209188 cgtcggcgagcagcccggcc 209169
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>emb|AL939120.1|SCO939120 Streptomyces coelicolor A3(2) complete genome; segment 17/29
          Length = 248550

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 432   tcgtcggcgagcagcccggc 451
             ||||||||||||||||||||
Sbjct: 85347 tcgtcggcgagcagcccggc 85366
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>emb|AL939108.1|SCO939108 Streptomyces coelicolor A3(2) complete genome; segment 5/29
          Length = 339650

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 511    gggcggtggcggcgccgatg 530
              ||||||||||||||||||||
Sbjct: 220644 gggcggtggcggcgccgatg 220663
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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 77    ttcggagtcgctctcagtgg 96
             ||||||||||||||||||||
Sbjct: 40516 ttcggagtcgctctcagtgg 40535
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>gb|AF151098.1| Mycobacterium avium FecB precursor (fecB) gene, complete cds
          Length = 1771

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 511  gggcggtggcggcgccgatggcgc 534
            |||||||||||||||||| |||||
Sbjct: 1151 gggcggtggcggcgccgacggcgc 1128
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>dbj|AP002872.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0416D03
          Length = 157112

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 464    cgtcgtcgccttcctgccct 483
              ||||||||||||||||||||
Sbjct: 123556 cgtcgtcgccttcctgccct 123575
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>gb|AE004564.1| Pseudomonas aeruginosa PAO1, section 125 of 529 of the complete
            genome
          Length = 10515

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 434  gtcggcgagcagcccggcca 453
            ||||||||||||||||||||
Sbjct: 9923 gtcggcgagcagcccggcca 9942
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>gb|AE004476.1| Pseudomonas aeruginosa PAO1, section 37 of 529 of the complete genome
          Length = 11930

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 432  tcgtcggcgagcagcccggc 451
            ||||||||||||||||||||
Sbjct: 3097 tcgtcggcgagcagcccggc 3116
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>gb|AE004447.1| Pseudomonas aeruginosa PAO1, section 8 of 529 of the complete genome
          Length = 18088

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 505  gcacatgggcggtggcggcg 524
            ||||||||||||||||||||
Sbjct: 8563 gcacatgggcggtggcggcg 8582
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 517    tggcggcgccgatggcgccg 536
              ||||||||||||||||||||
Sbjct: 777513 tggcggcgccgatggcgccg 777494
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 519     gcggcgccgatggcgccgtacggc 542
               ||||||||||||||||||| ||||
Sbjct: 5497602 gcggcgccgatggcgccgttcggc 5497625



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 432     tcgtcggcgagcagcccggc 451
               ||||||||||||||||||||
Sbjct: 2897697 tcgtcggcgagcagcccggc 2897678
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>dbj|AP002540.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0434B04
          Length = 167029

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 464   cgtcgtcgccttcctgccct 483
             ||||||||||||||||||||
Sbjct: 18910 cgtcgtcgccttcctgccct 18929
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>dbj|D87436.1| Homo sapiens mRNA for KIAA0249 gene, partial cds
          Length = 6219

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   agcaaaacacaacacagtac 44
            ||||||||||||||||||||
Sbjct: 5580 agcaaaacacaacacagtac 5561
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>dbj|AK110238.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-162-G01, full
           insert sequence
          Length = 2891

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 340 cgacgacggccaccgcgtac 359
           ||||||||||||||||||||
Sbjct: 541 cgacgacggccaccgcgtac 522
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>dbj|AP000919.6| Homo sapiens genomic DNA, chromosome 18 clone:RP11-737O24, complete
             sequence
          Length = 184440

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 25    agcaaaacacaacacagtac 44
             ||||||||||||||||||||
Sbjct: 98925 agcaaaacacaacacagtac 98944
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 514     cggtggcggcgccgatggcg 533
               ||||||||||||||||||||
Sbjct: 4624602 cggtggcggcgccgatggcg 4624583


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,838,788
Number of Sequences: 3902068
Number of extensions: 3838788
Number of successful extensions: 83450
Number of sequences better than 10.0: 58
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 81817
Number of HSP's gapped (non-prelim): 1633
length of query: 568
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 545
effective length of database: 17,143,297,704
effective search space: 9343097248680
effective search space used: 9343097248680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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