>TCPQ_YEAST (P47079) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 568

 Score = 38.5 bits (88), Expect = 0.007
 Identities = 17/32 (53%), Positives = 23/32 (71%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           I+D+  TK FA+  + +A  TVL +DQIIMAK
Sbjct: 517 IYDMLATKKFAINVATEAATTVLSIDQIIMAK 548

>TCPQ_PONPY (Q5RAP1) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 547

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           I D Y+ K +A+K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_MOUSE (P42932) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 547

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           I D Y+ K +A+K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_HUMAN (P50990) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta) (NY-REN-15 antigen)
          Length = 547

 Score = 38.1 bits (87), Expect = 0.010
 Identities = 19/32 (59%), Positives = 24/32 (75%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           I D Y+ K +A+K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWAIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_CHICK (Q6EE31) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 547

 Score = 36.6 bits (83), Expect = 0.028
 Identities = 18/32 (56%), Positives = 23/32 (71%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           I D Y+ K + +K + +A  TVLRVDQIIMAK
Sbjct: 496 ILDTYLGKYWGIKLATNAAVTVLRVDQIIMAK 527

>TCPQ_CANAL (P47828) T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 540

 Score = 33.5 bits (75), Expect = 0.24
 Identities = 15/32 (46%), Positives = 21/32 (65%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           + D+  TK  A+  + DA  T+L +DQIIMAK
Sbjct: 489 VLDILATKKSAIDLAVDATNTILSIDQIIMAK 520

>TCPQ_SCHPO (P78921) Probable T-complex protein 1 subunit theta (TCP-1-theta)|
           (CCT-theta)
          Length = 546

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 13/32 (40%), Positives = 23/32 (71%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQIIMAK 337
           I+D+ + K  A++ + + V TVL VDQ++M+K
Sbjct: 498 IFDVLLAKKSAIRLATETVLTVLNVDQVVMSK 529

>YJA9_YEAST (P47078) Hypothetical 12.7 kDa protein in CCT3-CCT8 intergenic|
           region
          Length = 108

 Score = 31.2 bits (69), Expect = 1.2
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +1

Query: 310 LRGSRPARRLCHDNLVNS*NSTYSIC 387
           LR S   R LCHDNLVN  +S+ S C
Sbjct: 47  LRCSWTTRLLCHDNLVNGKHSSCSFC 72

>LYC_CRAVI (P83673) Lysozyme (EC 3.2.1.17) (1,4-beta-N-acetylmuramidase)|
           (Fragments)
          Length = 119

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 25/100 (25%), Positives = 39/100 (39%), Gaps = 13/100 (13%)
 Frame = -2

Query: 340 KAGGRAATPSTRCNG*RLVFLCTLVSRVSCC------------GIFMQKTVSSYLGLSNR 197
           +AGGR    S  C+G     LC+   R  CC            G+  QK +     + + 
Sbjct: 7   RAGGRCQHDSITCSGRTRTGLCSGGVRRRCCVPSSSNSGSFSTGMVSQKCLRCICNVESA 66

Query: 196 FWL-LGLQGWWLMSCGGFASSSGTVLPVYHMITRGTCSSS 80
           +W+  G  G    +C    + S   +  Y  + R  CS+S
Sbjct: 67  YWIDCGSPGGDWKTCANNIACSSRCVQAY--MARSGCSNS 104

>DNAA_PHOLL (Q7NAD3) Chromosomal replication initiator protein dnaA|
          Length = 462

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 19/81 (23%), Positives = 36/81 (44%)
 Frame = +3

Query: 63  GSYNNKLDEQVPLVIM*YTGKTVPEELANPPQDISHQPCNPSSQNLLLKPR*DETVFCMK 242
           G  N+    +VPL+      K V +  + P + ++H P  P+ QN  ++P  D T     
Sbjct: 61  GLLNDFCGAEVPLLRFEVGNKPVSQNDSPPQRVVTHTPVAPAPQNTSVRPSWDNTAV--- 117

Query: 243 IPQHDTRETRVHRKTNLHPLH 305
                  +  +  ++N++P H
Sbjct: 118 -------QPELSYRSNVNPKH 131

>TCPG_OXYGR (O00782) T-complex protein 1 subunit gamma (TCP-1-gamma)|
           (CCT-gamma) (Chaperonin subunit CCTV gamma)
          Length = 559

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 432 IWDLYVTKSFALKYSADAVCTVLRVDQII 346
           +WD    K   LK S +A C +LR+D I+
Sbjct: 498 VWDPISVKQQTLKTSIEATCMLLRIDDIV 526


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,131,043
Number of Sequences: 219361
Number of extensions: 1292719
Number of successful extensions: 2791
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2789
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)