ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63a23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470005.1| Oryza sativa (japonica cultivar-group), mRNA 109 8e-21
2dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 8e-21
3gb|AY109440.1| Zea mays CL8405_1 mRNA sequence 62 2e-06
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 52 0.002
5gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genom... 52 0.002
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 52 0.002
7gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome... 46 0.096
8gb|BC045040.1| Xenopus laevis chaperonin containing TCP1, subuni... 46 0.096
9dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.096
10emb|CR848261.2| Xenopus tropicalis finished cDNA, clone TNeu069e02 46 0.096
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 46 0.096
12gb|AY251815.1| Bigelowiella natans chaperonin-containing TCP-1 t... 42 1.5
13gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, compl... 42 1.5
14gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, comp... 42 1.5
15gb|AC097510.3| Homo sapiens BAC clone RP11-390C19 from 4, comple... 42 1.5
16gb|AC092798.3| Homo sapiens chromosome 3 clone RP11-653E17, comp... 42 1.5
17gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, comple... 42 1.5
18gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, comp... 40 5.9
19gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, comple... 40 5.9
20gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, com... 40 5.9
21ref|NM_001007874.1| Xenopus tropicalis cct8 protein (cct8), mRNA 40 5.9
22gb|BC080140.1| Xenopus tropicalis cct8 protein, mRNA (cDNA clone... 40 5.9
23emb|AL590031.6| Human DNA sequence from clone RP11-285F11 on chr... 40 5.9
24dbj|AK139153.1| Mus musculus 7 days neonate cerebellum cDNA, RIK... 40 5.9
25gb|AC158624.4| Mus musculus BAC RP23-299I16 (Roswell Park Cance... 40 5.9
26gb|AC079181.3|AC079181 Mus musculus strain C57BL/6J chromosome 1... 40 5.9
27gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, com... 40 5.9
28gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, com... 40 5.9
29emb|BX004813.5| Zebrafish DNA sequence from clone CH211-55K22 in... 40 5.9
30gb|AF162715.2|AF162715 Homo sapiens Skn-1a/i-like mRNA 40 5.9
31tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy ... 40 5.9
32dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 5.9
33gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Can... 40 5.9 
>ref|XM_470005.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2070

 Score =  109 bits (55), Expect = 8e-21
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                        
Query: 335  ggctttgccatgataatctggtcaactcgtaaaacagtacatacagcatctgctgagtat 394
            |||||||||||||| ||||||||||| || |  ||||||||| ||||||| || ||||||
Sbjct: 1694 ggctttgccatgatgatctggtcaacccgcagtacagtacatgcagcatccgcagagtat 1635

                                                          
Query: 395  tttagagcaaaggactttgtaacatanagatcccatattttcatga 440
            |||||||| ||  ||||||||||||| || ||||||||||||||||
Sbjct: 1634 tttagagcgaataactttgtaacataaaggtcccatattttcatga 1589
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>dbj|AK100651.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111D11, full
            insert sequence
          Length = 2070

 Score =  109 bits (55), Expect = 8e-21
 Identities = 93/106 (87%)
 Strand = Plus / Minus

                                                                        
Query: 335  ggctttgccatgataatctggtcaactcgtaaaacagtacatacagcatctgctgagtat 394
            |||||||||||||| ||||||||||| || |  ||||||||| ||||||| || ||||||
Sbjct: 1694 ggctttgccatgatgatctggtcaacccgcagtacagtacatgcagcatccgcagagtat 1635

                                                          
Query: 395  tttagagcaaaggactttgtaacatanagatcccatattttcatga 440
            |||||||| ||  ||||||||||||| || ||||||||||||||||
Sbjct: 1634 tttagagcgaataactttgtaacataaaggtcccatattttcatga 1589
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>gb|AY109440.1| Zea mays CL8405_1 mRNA sequence
          Length = 1151

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 87/106 (82%)
 Strand = Plus / Plus

                                                                       
Query: 332 gccggctttgccatgataatctggtcaactcgtaaaacagtacatacagcatctgctgag 391
           |||||||| ||||| || ||||||||||| || |  || || ||| | ||||| || || 
Sbjct: 423 gccggcttcgccataatgatctggtcaacccgcagcacggtgcatgcggcatcggcagaa 482

                                                         
Query: 392 tattttagagcaaaggactttgtaacatanagatcccatattttca 437
           |||||||| |||||| ||||||| ||||| || |||||||||||||
Sbjct: 483 tattttagggcaaagaactttgtgacataaaggtcccatattttca 528
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 408      actttgtaacatanagatcccatattttcatga 440
                ||||||||||||| || ||||||||||||||||
Sbjct: 33293424 actttgtaacataaaggtcccatattttcatga 33293392



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 368      acagtacatacagcatctgctgagtattttagagc 402
                ||||||||| ||||||| || ||||||||||||||
Sbjct: 33293646 acagtacatgcagcatccgcagagtattttagagc 33293612
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>gb|AC135563.5| Oryza sativa chromosome 3 BAC OSJNBb0015I02 genomic sequence, complete
             sequence
          Length = 122815

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                              
Query: 408   actttgtaacatanagatcccatattttcatga 440
             ||||||||||||| || ||||||||||||||||
Sbjct: 49940 actttgtaacataaaggtcccatattttcatga 49908



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                
Query: 368   acagtacatacagcatctgctgagtattttagagc 402
             ||||||||| ||||||| || ||||||||||||||
Sbjct: 50162 acagtacatgcagcatccgcagagtattttagagc 50128
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 408      actttgtaacatanagatcccatattttcatga 440
                ||||||||||||| || ||||||||||||||||
Sbjct: 33383934 actttgtaacataaaggtcccatattttcatga 33383902



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                                   
Query: 368      acagtacatacagcatctgctgagtattttagagc 402
                ||||||||| ||||||| || ||||||||||||||
Sbjct: 33384156 acagtacatgcagcatccgcagagtattttagagc 33384122
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>gb|AC133218.3| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone
             P0549G05, complete sequence
          Length = 147182

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 371   gtacatacagcatctgctgagtattttagag 401
             |||||| |||||||||| |||||||||||||
Sbjct: 67060 gtacatgcagcatctgcagagtattttagag 67030



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 411   ttgtaacatanagatcccatattttcatga 440
             |||||||||| || ||||||||||||||||
Sbjct: 66814 ttgtaacatagaggtcccatattttcatga 66785
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>gb|BC045040.1| Xenopus laevis chaperonin containing TCP1, subunit 8 (theta), mRNA
            (cDNA clone MGC:53230 IMAGE:5543459), complete cds
          Length = 1876

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 326  ccgcccgccggctttgccatgataatctggtcaac 360
            |||||||| || ||||||||||| |||||||||||
Sbjct: 1654 ccgcccgctggttttgccatgatgatctggtcaac 1620
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 371      gtacatacagcatctgctgagtattttagag 401
                |||||| |||||||||| |||||||||||||
Sbjct: 20945448 gtacatgcagcatctgcagagtattttagag 20945418



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 411      ttgtaacatanagatcccatattttcatga 440
                |||||||||| || ||||||||||||||||
Sbjct: 20945202 ttgtaacatagaggtcccatattttcatga 20945173
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>emb|CR848261.2| Xenopus tropicalis finished cDNA, clone TNeu069e02
          Length = 1870

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 338  tttgccatgataatctggtcaac 360
            |||||||||||||||||||||||
Sbjct: 1651 tttgccatgataatctggtcaac 1629
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                               
Query: 371      gtacatacagcatctgctgagtattttagag 401
                |||||| |||||||||| |||||||||||||
Sbjct: 21255683 gtacatgcagcatctgcagagtattttagag 21255653



 Score = 46.1 bits (23), Expect = 0.096
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                              
Query: 411      ttgtaacatanagatcccatattttcatga 440
                |||||||||| || ||||||||||||||||
Sbjct: 21255437 ttgtaacatagaggtcccatattttcatga 21255408
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>gb|AY251815.1| Bigelowiella natans chaperonin-containing TCP-1 theta mRNA, complete
            cds
          Length = 1977

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 322  cggcccgcccgccggctttgccatgataatctg 354
            |||||| || ||||||||||||||||| |||||
Sbjct: 1667 cggcccaccagccggctttgccatgatgatctg 1635
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>gb|AC009990.9| Homo sapiens chromosome 05 clone RP11-94N1, complete sequence
          Length = 159772

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 400    agcaaaggactttgtaacata 420
              |||||||||||||||||||||
Sbjct: 146037 agcaaaggactttgtaacata 146017
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>gb|AC116339.2| Homo sapiens chromosome 5 clone RP11-1006G2, complete sequence
          Length = 74705

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 400   agcaaaggactttgtaacata 420
             |||||||||||||||||||||
Sbjct: 73725 agcaaaggactttgtaacata 73745
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>gb|AC097510.3| Homo sapiens BAC clone RP11-390C19 from 4, complete sequence
          Length = 177467

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 287   taatcttcatccattgcacct 307
             |||||||||||||||||||||
Sbjct: 82368 taatcttcatccattgcacct 82388
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>gb|AC092798.3| Homo sapiens chromosome 3 clone RP11-653E17, complete sequence
          Length = 156180

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 215   ataggatgaaacagtcttctgcatg 239
             |||| ||||||||||||||||||||
Sbjct: 90272 atagcatgaaacagtcttctgcatg 90248
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>gb|AC010259.7| Homo sapiens chromosome 5 clone CTC-454M9, complete sequence
          Length = 195476

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 400    agcaaaggactttgtaacata 420
              |||||||||||||||||||||
Sbjct: 154657 agcaaaggactttgtaacata 154637
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>gb|AC146033.2| Pan troglodytes BAC clone RP43-14B18 from 7, complete sequence
          Length = 170094

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 364   taaaacagtacatacagcat 383
             ||||||||||||||||||||
Sbjct: 75825 taaaacagtacatacagcat 75806
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>gb|AC006463.4| Homo sapiens BAC clone RP11-395G17 from 7, complete sequence
          Length = 120984

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 364   taaaacagtacatacagcat 383
             ||||||||||||||||||||
Sbjct: 94253 taaaacagtacatacagcat 94272
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>gb|AC102663.6| Mus musculus chromosome 6, clone RP23-244M15, complete sequence
          Length = 223742

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 60    tttggttcatataacaataa 79
             ||||||||||||||||||||
Sbjct: 97283 tttggttcatataacaataa 97302
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>ref|NM_001007874.1| Xenopus tropicalis cct8 protein (cct8), mRNA
          Length = 1967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  ctttgccatgataatctggtcaac 360
            ||||||||| ||||||||||||||
Sbjct: 1650 ctttgccattataatctggtcaac 1627
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>gb|BC080140.1| Xenopus tropicalis cct8 protein, mRNA (cDNA clone MGC:89698
            IMAGE:7026586), complete cds
          Length = 1967

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 337  ctttgccatgataatctggtcaac 360
            ||||||||| ||||||||||||||
Sbjct: 1650 ctttgccattataatctggtcaac 1627
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>emb|AL590031.6| Human DNA sequence from clone RP11-285F11 on chromosome X Contains the
             5' end of the gene for a novel WD repeat domain protein,
             complete sequence
          Length = 145153

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 393   attttagagcaaaggacttt 412
             ||||||||||||||||||||
Sbjct: 49303 attttagagcaaaggacttt 49284
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>dbj|AK139153.1| Mus musculus 7 days neonate cerebellum cDNA, RIKEN full-length
            enriched library, clone:A730051F21
            product:unclassifiable, full insert sequence
          Length = 3347

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   tttggttcatataacaataa 79
            ||||||||||||||||||||
Sbjct: 2897 tttggttcatataacaataa 2916
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>gb|AC158624.4| Mus musculus  BAC RP23-299I16 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 174188

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 21     gcagaacagaattttacaaa 40
              ||||||||||||||||||||
Sbjct: 149801 gcagaacagaattttacaaa 149782
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>gb|AC079181.3|AC079181 Mus musculus strain C57BL/6J chromosome 12 clone RP23-197F8, complete
             sequence
          Length = 209058

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 30    aattttacaaaaccatcttt 49
             ||||||||||||||||||||
Sbjct: 47068 aattttacaaaaccatcttt 47087
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>gb|AC135977.5| Homo sapiens chromosome 11, clone RP11-61N20, complete sequence
          Length = 152868

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 275    gcacagaaaaactaatcttc 294
              ||||||||||||||||||||
Sbjct: 117998 gcacagaaaaactaatcttc 118017
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>gb|AC118942.4| Homo sapiens chromosome 11, clone RP11-15P23, complete sequence
          Length = 161527

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 275   gcacagaaaaactaatcttc 294
             ||||||||||||||||||||
Sbjct: 29590 gcacagaaaaactaatcttc 29609
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>emb|BX004813.5| Zebrafish DNA sequence from clone CH211-55K22 in linkage group 8,
             complete sequence
          Length = 148955

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   ctttgccatgataatctggt 356
             ||||||||||||||||||||
Sbjct: 92866 ctttgccatgataatctggt 92847
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>gb|AF162715.2|AF162715 Homo sapiens Skn-1a/i-like mRNA
          Length = 3450

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 371 gtacatacagcatctgctga 390
           ||||||||||||||||||||
Sbjct: 595 gtacatacagcatctgctga 576
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>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region
               locus, strain C57BL/6
          Length = 2500000

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 30      aattttacaaaaccatcttt 49
               ||||||||||||||||||||
Sbjct: 1049966 aattttacaaaaccatcttt 1049985
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>dbj|AP001150.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-778O17, complete
             sequence
          Length = 157282

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 371   gtacatacagcatctgctga 390
             ||||||||||||||||||||
Sbjct: 71130 gtacatacagcatctgctga 71111
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>gb|AC153968.3| Mus musculus 10 BAC RP24-343C11 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 151710

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 21    gcagaacagaattttacaaa 40
             ||||||||||||||||||||
Sbjct: 85501 gcagaacagaattttacaaa 85482


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,032,501
Number of Sequences: 3902068
Number of extensions: 4032501
Number of successful extensions: 74222
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74022
Number of HSP's gapped (non-prelim): 199
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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