ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63a12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DNLI_BPT3 (P07717) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleot... 30 1.2
2KAB7_YEAST (P31374) Probable serine/threonine-protein kinase YAL... 27 9.9

>DNLI_BPT3 (P07717) DNA ligase (EC 6.5.1.1) (Polydeoxyribonucleotide synthase|
           [ATP])
          Length = 346

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
 Frame = +2

Query: 131 GKFNFTVLLQLTSLNVYACLPLLISRS--KFNTMSLFQPLHTPSRSCILLIHFFP 289
           GKF F +  +  S+ +YA +P+ I+ S   ++  +L  P H  +    LL+ +FP
Sbjct: 139 GKFEFHLDPKRLSVRLYAVMPIHIAESGEDYDVQNLLMPYHVEAMRS-LLVEYFP 192



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>KAB7_YEAST (P31374) Probable serine/threonine-protein kinase YAL017W (EC|
           2.7.11.1)
          Length = 1356

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 158 QLTSLNVYACLPLLISRSKFNTMSLFQPLHTPSRSCIL 271
           Q  + N  ACL   IS++    ++L   +HT SR+ +L
Sbjct: 473 QFRAANDLACLVFGISQNAIRALTLMDLIHTDSRNFVL 510


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,400,526
Number of Sequences: 219361
Number of extensions: 702689
Number of successful extensions: 1344
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1338
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1344
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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