ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62l09 |
|---|---|
| Clone Library Name | barley_pub |
>PSBR_SPIOL (P10690) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 150 bits (378), Expect = 3e-36 Identities = 78/117 (66%), Positives = 87/117 (74%), Gaps = 2/117 (1%) Frame = -2 Query: 489 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 316 A LPSLSR +SF V SG KKIKVDKPLG+GGG+ + +D++GRK KGVYQFVD Sbjct: 23 AVKGLPSLSRSSASFTVRASGVKKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGVYQFVD 82 Query: 315 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 145 KYGANVDGYSPIY EEW+ +GD YAGGTTGLLIWAVT LVYNTSALA Sbjct: 83 KYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNTSALA 139
>PSBR_LYCES (Q40163) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 141 bits (355), Expect = 1e-33 Identities = 72/118 (61%), Positives = 83/118 (70%), Gaps = 2/118 (1%) Frame = -2 Query: 492 VAPTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFV 319 ++ LPSL+R SSF VV SG KK+K DKP G+ G + + +DA+GRK KGVYQ+V Sbjct: 20 ISVKGLPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYV 79 Query: 318 DKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 145 DKYGANVDGYSPIY +EWS SGD Y GGTTGL IWAVT LVYNTSALA Sbjct: 80 DKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNTSALA 137
>PSBR_SOLTU (P06183) Photosystem II 10 kDa polypeptide, chloroplast precursor| (Light-inducible tissue-specific ST-LS1 protein) Length = 138 Score = 140 bits (354), Expect = 2e-33 Identities = 72/113 (63%), Positives = 81/113 (71%), Gaps = 2/113 (1%) Frame = -2 Query: 477 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYGA 304 LPSL+R SSF VV SG KK+K DKP G+ G + + +DA+GRK KGVYQ+VDKYGA Sbjct: 25 LPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGVYQYVDKYGA 84 Query: 303 NVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 145 NVDGYSPIY +EWS SGD Y GGTTGL IWAVT LVYNTSALA Sbjct: 85 NVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNTSALA 137
>PSBR_TOBAC (Q40519) Photosystem II 10 kDa polypeptide, chloroplast precursor| (PII10) Length = 136 Score = 137 bits (346), Expect = 1e-32 Identities = 71/117 (60%), Positives = 82/117 (70%), Gaps = 2/117 (1%) Frame = -2 Query: 489 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 316 A LPSL+R SSF V SG KK+K DKP G+ G +++ +DA+GRK KGVYQFVD Sbjct: 19 AVKGLPSLARSSSSFRVQASGVKKLKTDKPYGINGSMSLRDGVDASGRKQKGKGVYQFVD 78 Query: 315 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 145 KYGANVDGYSPIY ++WS SGD Y GGTTGL IWAVT LV+NTSALA Sbjct: 79 KYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNTSALA 135
>PSBR_ARATH (P27202) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 140 Score = 132 bits (331), Expect = 7e-31 Identities = 69/117 (58%), Positives = 78/117 (66%), Gaps = 2/117 (1%) Frame = -2 Query: 489 APTSLPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVD 316 A LPSL+R SF +V SG KKIK DKP G+ G + + +DA+GRK GVY++VD Sbjct: 23 AARGLPSLTRARPSFKIVASGVKKIKTDKPFGINGSMDLRDGVDASGRKGKGYGVYKYVD 82 Query: 315 KYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 145 KYGANVDGYSPIY EWS SGD Y GG TGL IWAVT LVYNTSALA Sbjct: 83 KYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 139
>PSBR_BRACM (P49108) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 141 Score = 130 bits (328), Expect = 2e-30 Identities = 70/114 (61%), Positives = 79/114 (69%), Gaps = 3/114 (2%) Frame = -2 Query: 477 LPSLSRRG-SSFAVVCSGGKKIKVDKPLGLGGGLTV--DIDANGRKVGKKGVYQFVDKYG 307 LPSL+R SSF +V SG KKIK DKP G+ G + + +DA+GRK GVY+FVDKYG Sbjct: 27 LPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGVYKFVDKYG 86 Query: 306 ANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXXXXXXXXLVYNTSALA 145 ANVDGYSPIY +EWS SGD Y GG TGL IWAVT LVYNTSALA Sbjct: 87 ANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNTSALA 140
>PSBR_HORVU (Q40070) Photosystem II 10 kDa polypeptide, chloroplast precursor| Length = 138 Score = 121 bits (303), Expect = 1e-27 Identities = 67/135 (49%), Positives = 80/135 (59%), Gaps = 11/135 (8%) Frame = -2 Query: 516 ASMITSPIVAPTSLPSLSRRG---------SSFAVVCSGGKKIKVDKPLGLGGGLTVD-- 370 A ++ S + P+S P L R S +V KK++ +P G GGG+ Sbjct: 3 ACVMASLALKPSSSPLLQRSKLGGVRPSARPSLVIVAKKAKKVQTAQPYGPGGGVAFKEG 62 Query: 369 IDANGRKVGKKGVYQFVDKYGANVDGYSPIYTPEEWSESGDRYAGGTTGLLIWAVTXXXX 190 +DA+GR KGVYQF DKYGANVDGYSPIYTPEEWS SGD Y GG TGL +WAVT Sbjct: 63 VDASGRVAKGKGVYQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGI 122 Query: 189 XXXXXXLVYNTSALA 145 LVY+TSALA Sbjct: 123 LLGGALLVYSTSALA 137
>PSBR_WHEAT (P12358) Photosystem II 10 kDa polypeptide (Fragment)| Length = 24 Score = 51.6 bits (122), Expect = 1e-06 Identities = 24/24 (100%), Positives = 24/24 (100%) Frame = -2 Query: 432 SGGKKIKVDKPLGLGGGLTVDIDA 361 SGGKKIKVDKPLGLGGGLTVDIDA Sbjct: 1 SGGKKIKVDKPLGLGGGLTVDIDA 24
>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)| Length = 1386 Score = 31.2 bits (69), Expect = 1.8 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%) Frame = +2 Query: 335 PFLPTFLPLASMSTVKPPPS-PRGLSTLIFLPPLQTTAKEEPRRER 469 P+LP P S + PPPS P G T I PL++ AK + ++ Sbjct: 183 PYLPPAQPSPSKPQLPPPPSIPSGNKTAIQQEPLESGAKNKTAEQK 228
>TYPH_IDILO (Q5QXT8) Thymidine phosphorylase (EC 2.4.2.4) (TdRPase)| Length = 446 Score = 30.8 bits (68), Expect = 2.3 Identities = 20/49 (40%), Positives = 25/49 (51%) Frame = -2 Query: 477 LPSLSRRGSSFAVVCSGGKKIKVDKPLGLGGGLTVDIDANGRKVGKKGV 331 L ++ R AVVC GG + K D L L G+T DI G KV + V Sbjct: 354 LSEVNTRELGMAVVCLGGGRRKADDKLDLSVGMT-DILTVGSKVDSESV 401
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.8 bits (68), Expect = 2.3 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%) Frame = +2 Query: 293 PSTLAPYLSTNW*TPF-------LPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 442 P T P +T TP PT P+ + +TV P P+P G T P TT Sbjct: 1895 PPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1951 Score = 30.4 bits (67), Expect = 3.0 Identities = 17/50 (34%), Positives = 24/50 (48%) Frame = +2 Query: 293 PSTLAPYLSTNW*TPFLPTFLPLASMSTVKPPPSPRGLSTLIFLPPLQTT 442 P+T+ + N P PT P+ + +TV P P+P G T P TT Sbjct: 1882 PTTMTTTTTEN---PTPPTTTPITTTTTVTPTPTPTGTQTPTTTPITTTT 1928
>KNH1_CANGA (O74684) Cell wall synthesis protein KNH1 precursor| Length = 265 Score = 30.0 bits (66), Expect = 3.9 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 3/59 (5%) Frame = -2 Query: 438 VCSGGK-KIKVDKPLGLGGGL-TVDIDAN-GRKVGKKGVYQFVDKYGANVDGYSPIYTP 271 +CSG KI+ K +G + T D +A + VG G Y +V Y A DGY+ Y+P Sbjct: 59 LCSGPNYKIEAFKVIGKLSDIGTTDFEAEVSQSVGANGYY-YVQIYAATTDGYTIHYSP 116
>DMI1L_ORYSA (Q75LD5) Putative ion channel DMI1-like, chloroplast precursor| Length = 893 Score = 29.3 bits (64), Expect = 6.7 Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 8/50 (16%) Frame = +2 Query: 380 KPPPSPRGLSTLIFLPPLQ--------TTAKEEPRRERDGRLVGATIGEV 505 +PPP+PR S PP Q TT PRR RD R G G+V Sbjct: 53 RPPPTPRSRSRSPLPPPEQQKQQQPPPTTPPPAPRR-RDPRYAGVRRGDV 101
>PCLO_HUMAN (Q9Y6V0) Protein piccolo (Aczonin)| Length = 5183 Score = 29.3 bits (64), Expect = 6.7 Identities = 15/40 (37%), Positives = 19/40 (47%) Frame = +2 Query: 356 PLASMSTVKPPPSPRGLSTLIFLPPLQTTAKEEPRRERDG 475 P+ T KPP P G + PP Q T E+P E+ G Sbjct: 352 PVQPPGTTKPPAQPLGPAK----PPAQQTGSEKPSSEQPG 387
>VAP1_STRPU (Q06155) Vesicle-associated protein (VAP-1) (Fragment)| Length = 433 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -2 Query: 432 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 283 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 211 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 260 Score = 29.3 bits (64), Expect = 6.7 Identities = 23/52 (44%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = -2 Query: 432 SGGKKIKVDKPLG--LGGGLTVDIDANGRKVGKKGVYQFVDKYGANVDGYSP 283 SGG + V +G LGGGL DIDANG V KG D G ++D P Sbjct: 104 SGGVGLDVGGGIGGGLGGGL--DIDANGPDVDIKGPKVGGDISGPDLDVSGP 153 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 48,123,901 Number of Sequences: 219361 Number of extensions: 815930 Number of successful extensions: 3326 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3086 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3312 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
