ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63a08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_184996.1| Oryza sativa (japonica cultivar-group), mRNA 264 3e-67
2dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 3e-67
3dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 256 8e-65
4gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence 244 3e-61
5gb|AY106784.1| Zea mays PCO100577 mRNA sequence 236 7e-59
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 94 6e-16
7gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno... 94 6e-16
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
9gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete s... 66 1e-07
10gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
11dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 54 6e-04
12dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
13dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 6e-04
14gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 54 6e-04
15dbj|AP004983.1| Lotus japonicus genomic DNA, chromosome 6, clone... 46 0.14
16gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, co... 44 0.54
17gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Can... 42 2.1
18emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on ch... 42 2.1
19gb|AC005907.1| Homo sapiens 12q24.1 PAC P443K8 (Rosewell Park Ca... 42 2.1
20dbj|AK134558.1| Mus musculus adult male medulla oblongata cDNA, ... 42 2.1
21gb|AF104455.1| Homo sapiens chromosome 7qtelo BAC F6, complete s... 40 8.4
22gb|AC163655.3| Mus musculus BAC clone RP23-264P21 from chromosom... 40 8.4
23emb|Z81088.1|CEF53F1 Caenorhabditis elegans Cosmid F53F1, comple... 40 8.4
24emb|Z95118.1|HS354J5 Human DNA sequence from clone RP3-354J5 on ... 40 8.4
25gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosom... 40 8.4
26ref|NM_073924.2| Caenorhabditis elegans F53F1.5 (cuticlin) mRNA,... 40 8.4
27gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Ca... 40 8.4
28gb|AC092967.5| Homo sapiens 3 BAC RP11-521A24 (Roswell Park Canc... 40 8.4
29dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 8.4
30gb|AC141427.5| Mus musculus BAC clone RP23-100O21 from chromosom... 40 8.4
31gb|AC005771.1|AC005771 Homo sapiens chromosome 17, clone hRPK.10... 40 8.4
32gb|DQ228487.1| Uncultured bacterium 2063G putative membrane prot... 40 8.4
33emb|X74838.1|CECUT2 C.elegans cut-2 gene for cuticlin 2 40 8.4

>ref|NM_184996.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 714

 Score =  264 bits (133), Expect = 3e-67
 Identities = 322/385 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290
           |||| |||| |||||| ||||| ||||||   |||||||| || ||||||||||| ||||
Sbjct: 694 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 635

                                                                       
Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgcttgagatgctttgctggat 350
           | ||||  || |||||||| |||||| |||||||||||||||||||||  || ||||| |
Sbjct: 634 ctttgttttggattctgaagtggtggttgaggtgataccgcttgagatttttcgctggct 575

                                                                       
Query: 351 ctatggatggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacatacccca 410
           || ||||||| ||||||||||||| ||| ||||  ||||| |||||||||||||| ||||
Sbjct: 574 ctttggatggttgtccatggtgcaagtaatagtgagtgcagtcatacatcacatatccca 515

                                                                       
Query: 411 gcaggccaccggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacat 470
            |||||||||  | ||||||||||| ||| ||| |||| | || ||||| ||||| |  |
Sbjct: 514 acaggccaccaccaaatagcgcaggagtgatagttggagttgcgaagaacgctaccagct 455

                                                                       
Query: 471 tccagaacggcacacataagatcgctgccccagcaggagggaatacgagcctgagcgagt 530
           |||||||||||||||| || || ||||   ||| ||| |||||||| |||||||| ||||
Sbjct: 454 tccagaacggcacacacaaaattgctgttgcagtaggggggaatacaagcctgagtgagt 395

                                                                       
Query: 531 ccataggatgcttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagc 590
           |||||||||||||||||||||||||||| |  | ||||||||||||||| | ||||||| 
Sbjct: 394 ccataggatgcttatggtggcatccatgaagaaggtaatgtgctgtgtttgcccaatagg 335

                                    
Query: 591 tcttcgtctcgatgtggaagaggaa 615
           | || ||||| |||||||| |||||
Sbjct: 334 ttttggtctcaatgtggaataggaa 310



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>dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F06, full
           insert sequence
          Length = 1045

 Score =  264 bits (133), Expect = 3e-67
 Identities = 322/385 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290
           |||| |||| |||||| ||||| ||||||   |||||||| || ||||||||||| ||||
Sbjct: 813 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 754

                                                                       
Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgcttgagatgctttgctggat 350
           | ||||  || |||||||| |||||| |||||||||||||||||||||  || ||||| |
Sbjct: 753 ctttgttttggattctgaagtggtggttgaggtgataccgcttgagatttttcgctggct 694

                                                                       
Query: 351 ctatggatggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacatacccca 410
           || ||||||| ||||||||||||| ||| ||||  ||||| |||||||||||||| ||||
Sbjct: 693 ctttggatggttgtccatggtgcaagtaatagtgagtgcagtcatacatcacatatccca 634

                                                                       
Query: 411 gcaggccaccggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacat 470
            |||||||||  | ||||||||||| ||| ||| |||| | || ||||| ||||| |  |
Sbjct: 633 acaggccaccaccaaatagcgcaggagtgatagttggagttgcgaagaacgctaccagct 574

                                                                       
Query: 471 tccagaacggcacacataagatcgctgccccagcaggagggaatacgagcctgagcgagt 530
           |||||||||||||||| || || ||||   ||| ||| |||||||| |||||||| ||||
Sbjct: 573 tccagaacggcacacacaaaattgctgttgcagtaggggggaatacaagcctgagtgagt 514

                                                                       
Query: 531 ccataggatgcttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagc 590
           |||||||||||||||||||||||||||| |  | ||||||||||||||| | ||||||| 
Sbjct: 513 ccataggatgcttatggtggcatccatgaagaaggtaatgtgctgtgtttgcccaatagg 454

                                    
Query: 591 tcttcgtctcgatgtggaagaggaa 615
           | || ||||| |||||||| |||||
Sbjct: 453 ttttggtctcaatgtggaataggaa 429



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>dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118H09, full
           insert sequence
          Length = 1229

 Score =  256 bits (129), Expect = 8e-65
 Identities = 321/385 (83%)
 Strand = Plus / Minus

                                                                       
Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290
           |||| |||| |||||| ||||| ||||||   |||||||| || ||||||||||| ||||
Sbjct: 914 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 855

                                                                       
Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgcttgagatgctttgctggat 350
           | ||||  || |||||||| |||||| |||||||||||||||||||||  || ||||| |
Sbjct: 854 ctttgttttggattctgaagtggtggttgaggtgataccgcttgagatttttcgctggct 795

                                                                       
Query: 351 ctatggatggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacatacccca 410
           || ||||||| ||||||||||||| ||| ||||  ||||| |||||||||||||| ||||
Sbjct: 794 ctttggatggttgtccatggtgcaagtaatagtgagtgcagtcatacatcacatatccca 735

                                                                       
Query: 411 gcaggccaccggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacat 470
            |||||||||  | ||||||||||| ||| ||| |||| | || ||||| ||||| |  |
Sbjct: 734 acaggccaccaccaaatagcgcaggagtgatagttggagttgcgaagaacgctaccagct 675

                                                                       
Query: 471 tccagaacggcacacataagatcgctgccccagcaggagggaatacgagcctgagcgagt 530
           |||||||||||||||| || || ||||   ||| ||| |||||||| |||||||| ||||
Sbjct: 674 tccagaacggcacacacaaaattgctgttgcagtaggggggaatacaagcctgagtgagt 615

                                                                       
Query: 531 ccataggatgcttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagc 590
           |||||||||||||||||||||||||||| |  | ||||||||||||||| | ||||||| 
Sbjct: 614 ccataggatgcttatggtggcatccatgaagaaggtaatgtgctgtgtttgcccaatagg 555

                                    
Query: 591 tcttcgtctcgatgtggaagaggaa 615
           | || ||| | |||||||| |||||
Sbjct: 554 ttttggtcccaatgtggaataggaa 530



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>gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence
          Length = 1084

 Score =  244 bits (123), Expect = 3e-61
 Identities = 312/375 (83%)
 Strand = Plus / Minus

                                                                       
Query: 241 aggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagcccttgtcctg 300
           |||||| ||||| || || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 786 aggcaatgtcccaaagacagcgtcccaaagcgatgaggtgatgccgaagcccttgtcctg 727

                                                                       
Query: 301 aattctgaaatggtggctgaggtgataccgcttgagatgctttgctggatctatggatgg 360
            |||||||| || ||| |||||||||||| ||||||||| |||||||| ||| |||||||
Sbjct: 726 gattctgaagtgatggttgaggtgatacctcttgagatgttttgctgggtctttggatgg 667

                                                                       
Query: 361 ctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggccacc 420
            || |||||||||||||||||||  |||||||||||||||||||| |||| ||| || ||
Sbjct: 666 ttgcccatggtgcaggtagtagtgagtgcaatcatacatcacatatcccaacagaccgcc 607

                                                                       
Query: 421 ggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacattccagaacgg 480
             |||| || || || |||||||| ||| | || ||||| || || |  |||||||||||
Sbjct: 606 tccgaacagtgcgggtgtggtagacggagttgcgaagaacgcgaccaggttccagaacgg 547

                                                                       
Query: 481 cacacataagatcgctgccccagcaggagggaatacgagcctgagcgagtccataggatg 540
            | ||| || || ||||   ||| |||||| || || ||||||||||||||||| || ||
Sbjct: 546 gaaacacaaaattgctgttgcagtaggaggaaacacaagcctgagcgagtccatggggtg 487

                                                                       
Query: 541 cttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagctcttcgtctc 600
           |||||||||||| || || |  | ||||||||| |||||| |||| ||| |||| |||||
Sbjct: 486 cttatggtggcacccgtgaagaaggtaatgtgcggtgttccaccagtaggtcttggtctc 427

                          
Query: 601 gatgtggaagaggaa 615
           ||||||||| |||||
Sbjct: 426 gatgtggaacaggaa 412



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>gb|AY106784.1| Zea mays PCO100577 mRNA sequence
          Length = 1072

 Score =  236 bits (119), Expect = 7e-59
 Identities = 311/375 (82%)
 Strand = Plus / Minus

                                                                       
Query: 241 aggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagcccttgtcctg 300
           |||||| ||||| || || |||||||| ||||| ||||||||||||||||||||||||||
Sbjct: 843 aggcaatgtcccaaagacagcgtcccaaagcgatgaggtgatgccgaagcccttgtcctg 784

                                                                       
Query: 301 aattctgaaatggtggctgaggtgataccgcttgagatgctttgctggatctatggatgg 360
            |||||||| || ||| |||||||||||| ||||||||| |||||||| ||| |||||||
Sbjct: 783 gattctgaagtgatggttgaggtgatacctcttgagatgttttgctgggtctttggatgg 724

                                                                       
Query: 361 ctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggccacc 420
            || |||||||||||||||||||  |||||||||||||||||||| |||| ||| || ||
Sbjct: 723 ttgcccatggtgcaggtagtagtgagtgcaatcatacatcacatatcccaacagaccgcc 664

                                                                       
Query: 421 ggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacattccagaacgg 480
             |||| || || || |||||||| ||| | || ||||| || || |  |||||||||||
Sbjct: 663 tccgaacagtgcgggtgtggtagagggagttgcgaagaacgcgaccaggttccagaacgg 604

                                                                       
Query: 481 cacacataagatcgctgccccagcaggagggaatacgagcctgagcgagtccataggatg 540
            | ||| || || ||||   ||| |||||| || || |||||||| |||||||| || ||
Sbjct: 603 gaaacacaaaattgctgttgcagtaggaggaaacacaagcctgagtgagtccatggggtg 544

                                                                       
Query: 541 cttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagctcttcgtctc 600
           |||||||||||| || || |  | ||||||||| |||||| |||| ||| |||| |||||
Sbjct: 543 cttatggtggcacccgtgaagaaggtaatgtgcggtgttccaccagtaggtcttggtctc 484

                          
Query: 601 gatgtggaagaggaa 615
           ||||||||| |||||
Sbjct: 483 gatgtggaacaggaa 469



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                            
Query: 509      gggaatacgagcctgagcgagtccataggatgcttatggtggcatccatggattaagtaa 568
                |||||||| |||||||| |||||||||||||||||||||||||||||||| |  | ||||
Sbjct: 32073719 gggaatacaagcctgagtgagtccataggatgcttatggtggcatccatgaagaaggtaa 32073660

                           
Query: 569      tgtgctgtgtt 579
                |||||||||||
Sbjct: 32073659 tgtgctgtgtt 32073649



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                            
Query: 331      cttgagatgctttgctggatctatggatggctgtccatggtgcaggtagtagtacgtgca 390
                ||||||||  || ||||| ||| ||||||| ||||||||||||| ||| ||||  |||||
Sbjct: 32074025 cttgagatttttcgctggctctttggatggttgtccatggtgcaagtaatagtgagtgca 32073966

                                                                            
Query: 391      atcatacatcacataccccagcaggccaccggcgaatagcgcaggggtggtagatggact 450
                 |||||||||||||| |||| |||||||||  | ||||||||||| ||| ||| |||| |
Sbjct: 32073965 gtcatacatcacatatcccaacaggccaccaccaaatagcgcaggagtgatagttggagt 32073906

                                            
Query: 451      ggcaaagaatgctacgacattccagaac 478
                 || ||||| ||||| |  |||||||||
Sbjct: 32073905 tgcgaagaacgctaccagcttccagaac 32073878



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 86/102 (84%)
 Strand = Plus / Minus

                                                                            
Query: 231      tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290
                |||| |||| |||||| ||||| ||||||   |||||||| || ||||||||||| ||||
Sbjct: 32074224 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 32074165

                                                          
Query: 291      ccttgtcctgaattctgaaatggtggctgaggtgataccgct 332
                | ||||  || |||||||| |||||| |||||||||||||||
Sbjct: 32074164 ctttgttttggattctgaagtggtggttgaggtgataccgct 32074123



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>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                         
Query: 509   gggaatacgagcctgagcgagtccataggatgcttatggtggcatccatggattaagtaa 568
             |||||||| |||||||| |||||||||||||||||||||||||||||||| |  | ||||
Sbjct: 74844 gggaatacaagcctgagtgagtccataggatgcttatggtggcatccatgaagaaggtaa 74785

                        
Query: 569   tgtgctgtgtt 579
             |||||||||||
Sbjct: 74784 tgtgctgtgtt 74774



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                         
Query: 331   cttgagatgctttgctggatctatggatggctgtccatggtgcaggtagtagtacgtgca 390
             ||||||||  || ||||| ||| ||||||| ||||||||||||| ||| ||||  |||||
Sbjct: 75150 cttgagatttttcgctggctctttggatggttgtccatggtgcaagtaatagtgagtgca 75091

                                                                         
Query: 391   atcatacatcacataccccagcaggccaccggcgaatagcgcaggggtggtagatggact 450
              |||||||||||||| |||| |||||||||  | ||||||||||| ||| ||| |||| |
Sbjct: 75090 gtcatacatcacatatcccaacaggccaccaccaaatagcgcaggagtgatagttggagt 75031

                                         
Query: 451   ggcaaagaatgctacgacattccagaac 478
              || ||||| ||||| |  |||||||||
Sbjct: 75030 tgcgaagaacgctaccagcttccagaac 75003



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 86/102 (84%)
 Strand = Plus / Minus

                                                                         
Query: 231   tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290
             |||| |||| |||||| ||||| ||||||   |||||||| || ||||||||||| ||||
Sbjct: 75349 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 75290

                                                       
Query: 291   ccttgtcctgaattctgaaatggtggctgaggtgataccgct 332
             | ||||  || |||||||| |||||| |||||||||||||||
Sbjct: 75289 ctttgttttggattctgaagtggtggttgaggtgataccgct 75248



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 65/71 (91%)
 Strand = Plus / Minus

                                                                            
Query: 509      gggaatacgagcctgagcgagtccataggatgcttatggtggcatccatggattaagtaa 568
                |||||||| |||||||| |||||||||||||||||||||||||||||||| |  | ||||
Sbjct: 32164231 gggaatacaagcctgagtgagtccataggatgcttatggtggcatccatgaagaaggtaa 32164172

                           
Query: 569      tgtgctgtgtt 579
                |||||||||||
Sbjct: 32164171 tgtgctgtgtt 32164161



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 122/148 (82%)
 Strand = Plus / Minus

                                                                            
Query: 331      cttgagatgctttgctggatctatggatggctgtccatggtgcaggtagtagtacgtgca 390
                ||||||||  || ||||| ||| ||||||| ||||||||||||| ||| ||||  |||||
Sbjct: 32164537 cttgagatttttcgctggctctttggatggttgtccatggtgcaagtaatagtgagtgca 32164478

                                                                            
Query: 391      atcatacatcacataccccagcaggccaccggcgaatagcgcaggggtggtagatggact 450
                 |||||||||||||| |||| |||||||||  | ||||||||||| ||| ||| |||| |
Sbjct: 32164477 gtcatacatcacatatcccaacaggccaccaccaaatagcgcaggagtgatagttggagt 32164418

                                            
Query: 451      ggcaaagaatgctacgacattccagaac 478
                 || ||||| ||||| |  |||||||||
Sbjct: 32164417 tgcgaagaacgctaccagcttccagaac 32164390



 Score = 75.8 bits (38), Expect = 2e-10
 Identities = 86/102 (84%)
 Strand = Plus / Minus

                                                                            
Query: 231      tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290
                |||| |||| |||||| ||||| ||||||   |||||||| || ||||||||||| ||||
Sbjct: 32164736 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 32164677

                                                          
Query: 291      ccttgtcctgaattctgaaatggtggctgaggtgataccgct 332
                | ||||  || |||||||| |||||| |||||||||||||||
Sbjct: 32164676 ctttgttttggattctgaagtggtggttgaggtgataccgct 32164635



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>gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete sequence
          Length = 94633

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Minus

                                                                  
Query: 359   ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccag 411
             ||||| |||||||||||||||||||  ||||| |||||||||||||| |||||
Sbjct: 61415 ggctgaccatggtgcaggtagtagtgagtgcagtcatacatcacatagcccag 61363



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>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone
             OSJNBb0003F09, complete sequence
          Length = 159600

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                        
Query: 359   ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417
             ||||| ||||| ||||| |||||||  ||||| |||||||||||||| |||| ||||||
Sbjct: 63667 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 63609



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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 359      ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417
                ||||| ||||| ||||| |||||||  ||||| |||||||||||||| |||| ||||||
Sbjct: 26938700 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 26938642



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>dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010G06, full
           insert sequence
          Length = 1392

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417
           ||||| ||||| ||||| |||||||  ||||| |||||||||||||| |||| ||||||
Sbjct: 731 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 673



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>dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D02, full
           insert sequence
          Length = 1438

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                      
Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417
           ||||| ||||| ||||| |||||||  ||||| |||||||||||||| |||| ||||||
Sbjct: 753 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 695



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 54.0 bits (27), Expect = 6e-04
 Identities = 51/59 (86%)
 Strand = Plus / Minus

                                                                           
Query: 359      ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417
                ||||| ||||| ||||| |||||||  ||||| |||||||||||||| |||| ||||||
Sbjct: 26866870 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 26866812



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>dbj|AP004983.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04L20, TM0437b,
             complete sequence
          Length = 51960

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 29/31 (93%)
 Strand = Plus / Minus

                                            
Query: 530   tccataggatgcttatggtggcatccatgga 560
             ||||| ||||||||||||||||| |||||||
Sbjct: 20014 tccatgggatgcttatggtggcagccatgga 19984



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>gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, complete sequence
          Length = 207221

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 441    tagatggactggcaaagaatgc 462
              ||||||||||||||||||||||
Sbjct: 141511 tagatggactggcaaagaatgc 141490



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>gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 174974

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 494   gctgccccagcaggagggaat 514
             |||||||||||||||||||||
Sbjct: 31228 gctgccccagcaggagggaat 31248



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>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete
              sequence
          Length = 234055

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 179    actttctcatgcaaagaacacgttt 203
              ||||||||||||||||| |||||||
Sbjct: 158672 actttctcatgcaaagagcacgttt 158648



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>gb|AC005907.1| Homo sapiens 12q24.1 PAC P443K8 (Rosewell Park Cancer Institute Human
             Pac Library) complete sequence
          Length = 36200

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 494   gctgccccagcaggagggaat 514
             |||||||||||||||||||||
Sbjct: 24347 gctgccccagcaggagggaat 24367



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>dbj|AK134558.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length
            enriched library, clone:6330411P21
            product:t-complex-associated-testis-expressed 1-like,
            full insert sequence
          Length = 2194

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 179  actttctcatgcaaagaacacgttt 203
            ||||||||||||||||| |||||||
Sbjct: 2029 actttctcatgcaaagagcacgttt 2053



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>gb|AF104455.1| Homo sapiens chromosome 7qtelo BAC F6, complete sequence
          Length = 71353

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 361   ctgtccatggtgcaggtagtagta 384
             ||||||||||||||||||| ||||
Sbjct: 10213 ctgtccatggtgcaggtagaagta 10236



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>gb|AC163655.3| Mus musculus BAC clone RP23-264P21 from chromosome 6, complete sequence
          Length = 185583

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 301   aattctgaaatggtggctga 320
             ||||||||||||||||||||
Sbjct: 93751 aattctgaaatggtggctga 93770



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>emb|Z81088.1|CEF53F1 Caenorhabditis elegans Cosmid F53F1, complete sequence
          Length = 39478

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 491   atcgctgccccagcaggagg 510
             ||||||||||||||||||||
Sbjct: 25992 atcgctgccccagcaggagg 26011



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>emb|Z95118.1|HS354J5 Human DNA sequence from clone RP3-354J5 on chromosome 6q21-22 Contains
             a novel gene and a zinc finger protein pseudogene,
             complete sequence
          Length = 134515

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aaaactttctcatgcaaaga 195
             ||||||||||||||||||||
Sbjct: 46482 aaaactttctcatgcaaaga 46463



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>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence
          Length = 195151

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 337   atgctttgctggatctatgg 356
             ||||||||||||||||||||
Sbjct: 44487 atgctttgctggatctatgg 44468



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>ref|NM_073924.2| Caenorhabditis elegans F53F1.5 (cuticlin) mRNA, complete cds
          Length = 871

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 491 atcgctgccccagcaggagg 510
           ||||||||||||||||||||
Sbjct: 270 atcgctgccccagcaggagg 289



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>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 204425

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 159    acctacaaatcctctctaaa 178
              ||||||||||||||||||||
Sbjct: 159804 acctacaaatcctctctaaa 159823



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>gb|AC092967.5| Homo sapiens 3 BAC RP11-521A24 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 179848

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 291    ccttgtcctgaattctgaaa 310
              ||||||||||||||||||||
Sbjct: 108606 ccttgtcctgaattctgaaa 108625



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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 270     gcgaagaggtgatgccgaag 289
               ||||||||||||||||||||
Sbjct: 3968520 gcgaagaggtgatgccgaag 3968501



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>gb|AC141427.5| Mus musculus BAC clone RP23-100O21 from chromosome 6, complete sequence
          Length = 187833

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 301    aattctgaaatggtggctga 320
              ||||||||||||||||||||
Sbjct: 183287 aattctgaaatggtggctga 183268



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>gb|AC005771.1|AC005771 Homo sapiens chromosome 17, clone hRPK.1058_G_23, complete sequence
          Length = 190434

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 333   tgagatgctttgctggatct 352
             ||||||||||||||||||||
Sbjct: 65463 tgagatgctttgctggatct 65444



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>gb|DQ228487.1| Uncultured bacterium 2063G putative membrane protein, putative
             cardiolipin synthases/phospholipase D, conserved membrane
             protein, and putative polyketide synthase genes, complete
             cds; and putative xanthine/uracil permease gene, partial
             cds
          Length = 16557

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 408   ccagcaggccaccggcgaat 427
             ||||||||||||||||||||
Sbjct: 16264 ccagcaggccaccggcgaat 16245



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>emb|X74838.1|CECUT2 C.elegans cut-2 gene for cuticlin 2
          Length = 1589

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 491 atcgctgccccagcaggagg 510
           ||||||||||||||||||||
Sbjct: 944 atcgctgccccagcaggagg 963


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,037,268
Number of Sequences: 3902068
Number of extensions: 4037268
Number of successful extensions: 67149
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66987
Number of HSP's gapped (non-prelim): 158
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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