Clone Name | rbah63a08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_184996.1| Oryza sativa (japonica cultivar-group), mRNA Length = 714 Score = 264 bits (133), Expect = 3e-67 Identities = 322/385 (83%) Strand = Plus / Minus Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290 |||| |||| |||||| ||||| |||||| |||||||| || ||||||||||| |||| Sbjct: 694 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 635 Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgcttgagatgctttgctggat 350 | |||| || |||||||| |||||| ||||||||||||||||||||| || ||||| | Sbjct: 634 ctttgttttggattctgaagtggtggttgaggtgataccgcttgagatttttcgctggct 575 Query: 351 ctatggatggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacatacccca 410 || ||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 574 ctttggatggttgtccatggtgcaagtaatagtgagtgcagtcatacatcacatatccca 515 Query: 411 gcaggccaccggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacat 470 ||||||||| | ||||||||||| ||| ||| |||| | || ||||| ||||| | | Sbjct: 514 acaggccaccaccaaatagcgcaggagtgatagttggagttgcgaagaacgctaccagct 455 Query: 471 tccagaacggcacacataagatcgctgccccagcaggagggaatacgagcctgagcgagt 530 |||||||||||||||| || || |||| ||| ||| |||||||| |||||||| |||| Sbjct: 454 tccagaacggcacacacaaaattgctgttgcagtaggggggaatacaagcctgagtgagt 395 Query: 531 ccataggatgcttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagc 590 |||||||||||||||||||||||||||| | | ||||||||||||||| | ||||||| Sbjct: 394 ccataggatgcttatggtggcatccatgaagaaggtaatgtgctgtgtttgcccaatagg 335 Query: 591 tcttcgtctcgatgtggaagaggaa 615 | || ||||| |||||||| ||||| Sbjct: 334 ttttggtctcaatgtggaataggaa 310
>dbj|AK059874.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-F06, full insert sequence Length = 1045 Score = 264 bits (133), Expect = 3e-67 Identities = 322/385 (83%) Strand = Plus / Minus Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290 |||| |||| |||||| ||||| |||||| |||||||| || ||||||||||| |||| Sbjct: 813 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 754 Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgcttgagatgctttgctggat 350 | |||| || |||||||| |||||| ||||||||||||||||||||| || ||||| | Sbjct: 753 ctttgttttggattctgaagtggtggttgaggtgataccgcttgagatttttcgctggct 694 Query: 351 ctatggatggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacatacccca 410 || ||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 693 ctttggatggttgtccatggtgcaagtaatagtgagtgcagtcatacatcacatatccca 634 Query: 411 gcaggccaccggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacat 470 ||||||||| | ||||||||||| ||| ||| |||| | || ||||| ||||| | | Sbjct: 633 acaggccaccaccaaatagcgcaggagtgatagttggagttgcgaagaacgctaccagct 574 Query: 471 tccagaacggcacacataagatcgctgccccagcaggagggaatacgagcctgagcgagt 530 |||||||||||||||| || || |||| ||| ||| |||||||| |||||||| |||| Sbjct: 573 tccagaacggcacacacaaaattgctgttgcagtaggggggaatacaagcctgagtgagt 514 Query: 531 ccataggatgcttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagc 590 |||||||||||||||||||||||||||| | | ||||||||||||||| | ||||||| Sbjct: 513 ccataggatgcttatggtggcatccatgaagaaggtaatgtgctgtgtttgcccaatagg 454 Query: 591 tcttcgtctcgatgtggaagaggaa 615 | || ||||| |||||||| ||||| Sbjct: 453 ttttggtctcaatgtggaataggaa 429
>dbj|AK103085.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033118H09, full insert sequence Length = 1229 Score = 256 bits (129), Expect = 8e-65 Identities = 321/385 (83%) Strand = Plus / Minus Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290 |||| |||| |||||| ||||| |||||| |||||||| || ||||||||||| |||| Sbjct: 914 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 855 Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgcttgagatgctttgctggat 350 | |||| || |||||||| |||||| ||||||||||||||||||||| || ||||| | Sbjct: 854 ctttgttttggattctgaagtggtggttgaggtgataccgcttgagatttttcgctggct 795 Query: 351 ctatggatggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacatacccca 410 || ||||||| ||||||||||||| ||| |||| ||||| |||||||||||||| |||| Sbjct: 794 ctttggatggttgtccatggtgcaagtaatagtgagtgcagtcatacatcacatatccca 735 Query: 411 gcaggccaccggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacat 470 ||||||||| | ||||||||||| ||| ||| |||| | || ||||| ||||| | | Sbjct: 734 acaggccaccaccaaatagcgcaggagtgatagttggagttgcgaagaacgctaccagct 675 Query: 471 tccagaacggcacacataagatcgctgccccagcaggagggaatacgagcctgagcgagt 530 |||||||||||||||| || || |||| ||| ||| |||||||| |||||||| |||| Sbjct: 674 tccagaacggcacacacaaaattgctgttgcagtaggggggaatacaagcctgagtgagt 615 Query: 531 ccataggatgcttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagc 590 |||||||||||||||||||||||||||| | | ||||||||||||||| | ||||||| Sbjct: 614 ccataggatgcttatggtggcatccatgaagaaggtaatgtgctgtgtttgcccaatagg 555 Query: 591 tcttcgtctcgatgtggaagaggaa 615 | || ||| | |||||||| ||||| Sbjct: 554 ttttggtcccaatgtggaataggaa 530
>gb|BT018076.1| Zea mays clone EL01N0551G08.c mRNA sequence Length = 1084 Score = 244 bits (123), Expect = 3e-61 Identities = 312/375 (83%) Strand = Plus / Minus Query: 241 aggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagcccttgtcctg 300 |||||| ||||| || || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 786 aggcaatgtcccaaagacagcgtcccaaagcgatgaggtgatgccgaagcccttgtcctg 727 Query: 301 aattctgaaatggtggctgaggtgataccgcttgagatgctttgctggatctatggatgg 360 |||||||| || ||| |||||||||||| ||||||||| |||||||| ||| ||||||| Sbjct: 726 gattctgaagtgatggttgaggtgatacctcttgagatgttttgctgggtctttggatgg 667 Query: 361 ctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggccacc 420 || ||||||||||||||||||| |||||||||||||||||||| |||| ||| || || Sbjct: 666 ttgcccatggtgcaggtagtagtgagtgcaatcatacatcacatatcccaacagaccgcc 607 Query: 421 ggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacattccagaacgg 480 |||| || || || |||||||| ||| | || ||||| || || | ||||||||||| Sbjct: 606 tccgaacagtgcgggtgtggtagacggagttgcgaagaacgcgaccaggttccagaacgg 547 Query: 481 cacacataagatcgctgccccagcaggagggaatacgagcctgagcgagtccataggatg 540 | ||| || || |||| ||| |||||| || || ||||||||||||||||| || || Sbjct: 546 gaaacacaaaattgctgttgcagtaggaggaaacacaagcctgagcgagtccatggggtg 487 Query: 541 cttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagctcttcgtctc 600 |||||||||||| || || | | ||||||||| |||||| |||| ||| |||| ||||| Sbjct: 486 cttatggtggcacccgtgaagaaggtaatgtgcggtgttccaccagtaggtcttggtctc 427 Query: 601 gatgtggaagaggaa 615 ||||||||| ||||| Sbjct: 426 gatgtggaacaggaa 412
>gb|AY106784.1| Zea mays PCO100577 mRNA sequence Length = 1072 Score = 236 bits (119), Expect = 7e-59 Identities = 311/375 (82%) Strand = Plus / Minus Query: 241 aggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagcccttgtcctg 300 |||||| ||||| || || |||||||| ||||| |||||||||||||||||||||||||| Sbjct: 843 aggcaatgtcccaaagacagcgtcccaaagcgatgaggtgatgccgaagcccttgtcctg 784 Query: 301 aattctgaaatggtggctgaggtgataccgcttgagatgctttgctggatctatggatgg 360 |||||||| || ||| |||||||||||| ||||||||| |||||||| ||| ||||||| Sbjct: 783 gattctgaagtgatggttgaggtgatacctcttgagatgttttgctgggtctttggatgg 724 Query: 361 ctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggccacc 420 || ||||||||||||||||||| |||||||||||||||||||| |||| ||| || || Sbjct: 723 ttgcccatggtgcaggtagtagtgagtgcaatcatacatcacatatcccaacagaccgcc 664 Query: 421 ggcgaatagcgcaggggtggtagatggactggcaaagaatgctacgacattccagaacgg 480 |||| || || || |||||||| ||| | || ||||| || || | ||||||||||| Sbjct: 663 tccgaacagtgcgggtgtggtagagggagttgcgaagaacgcgaccaggttccagaacgg 604 Query: 481 cacacataagatcgctgccccagcaggagggaatacgagcctgagcgagtccataggatg 540 | ||| || || |||| ||| |||||| || || |||||||| |||||||| || || Sbjct: 603 gaaacacaaaattgctgttgcagtaggaggaaacacaagcctgagtgagtccatggggtg 544 Query: 541 cttatggtggcatccatggattaagtaatgtgctgtgttcgaccaatagctcttcgtctc 600 |||||||||||| || || | | ||||||||| |||||| |||| ||| |||| ||||| Sbjct: 543 cttatggtggcacccgtgaagaaggtaatgtgcggtgttccaccagtaggtcttggtctc 484 Query: 601 gatgtggaagaggaa 615 ||||||||| ||||| Sbjct: 483 gatgtggaacaggaa 469
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 509 gggaatacgagcctgagcgagtccataggatgcttatggtggcatccatggattaagtaa 568 |||||||| |||||||| |||||||||||||||||||||||||||||||| | | |||| Sbjct: 32073719 gggaatacaagcctgagtgagtccataggatgcttatggtggcatccatgaagaaggtaa 32073660 Query: 569 tgtgctgtgtt 579 ||||||||||| Sbjct: 32073659 tgtgctgtgtt 32073649 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 331 cttgagatgctttgctggatctatggatggctgtccatggtgcaggtagtagtacgtgca 390 |||||||| || ||||| ||| ||||||| ||||||||||||| ||| |||| ||||| Sbjct: 32074025 cttgagatttttcgctggctctttggatggttgtccatggtgcaagtaatagtgagtgca 32073966 Query: 391 atcatacatcacataccccagcaggccaccggcgaatagcgcaggggtggtagatggact 450 |||||||||||||| |||| ||||||||| | ||||||||||| ||| ||| |||| | Sbjct: 32073965 gtcatacatcacatatcccaacaggccaccaccaaatagcgcaggagtgatagttggagt 32073906 Query: 451 ggcaaagaatgctacgacattccagaac 478 || ||||| ||||| | ||||||||| Sbjct: 32073905 tgcgaagaacgctaccagcttccagaac 32073878 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290 |||| |||| |||||| ||||| |||||| |||||||| || ||||||||||| |||| Sbjct: 32074224 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 32074165 Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgct 332 | |||| || |||||||| |||||| ||||||||||||||| Sbjct: 32074164 ctttgttttggattctgaagtggtggttgaggtgataccgct 32074123
>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete sequence Length = 178158 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 509 gggaatacgagcctgagcgagtccataggatgcttatggtggcatccatggattaagtaa 568 |||||||| |||||||| |||||||||||||||||||||||||||||||| | | |||| Sbjct: 74844 gggaatacaagcctgagtgagtccataggatgcttatggtggcatccatgaagaaggtaa 74785 Query: 569 tgtgctgtgtt 579 ||||||||||| Sbjct: 74784 tgtgctgtgtt 74774 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 331 cttgagatgctttgctggatctatggatggctgtccatggtgcaggtagtagtacgtgca 390 |||||||| || ||||| ||| ||||||| ||||||||||||| ||| |||| ||||| Sbjct: 75150 cttgagatttttcgctggctctttggatggttgtccatggtgcaagtaatagtgagtgca 75091 Query: 391 atcatacatcacataccccagcaggccaccggcgaatagcgcaggggtggtagatggact 450 |||||||||||||| |||| ||||||||| | ||||||||||| ||| ||| |||| | Sbjct: 75090 gtcatacatcacatatcccaacaggccaccaccaaatagcgcaggagtgatagttggagt 75031 Query: 451 ggcaaagaatgctacgacattccagaac 478 || ||||| ||||| | ||||||||| Sbjct: 75030 tgcgaagaacgctaccagcttccagaac 75003 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290 |||| |||| |||||| ||||| |||||| |||||||| || ||||||||||| |||| Sbjct: 75349 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 75290 Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgct 332 | |||| || |||||||| |||||| ||||||||||||||| Sbjct: 75289 ctttgttttggattctgaagtggtggttgaggtgataccgct 75248
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 93.7 bits (47), Expect = 6e-16 Identities = 65/71 (91%) Strand = Plus / Minus Query: 509 gggaatacgagcctgagcgagtccataggatgcttatggtggcatccatggattaagtaa 568 |||||||| |||||||| |||||||||||||||||||||||||||||||| | | |||| Sbjct: 32164231 gggaatacaagcctgagtgagtccataggatgcttatggtggcatccatgaagaaggtaa 32164172 Query: 569 tgtgctgtgtt 579 ||||||||||| Sbjct: 32164171 tgtgctgtgtt 32164161 Score = 87.7 bits (44), Expect = 4e-14 Identities = 122/148 (82%) Strand = Plus / Minus Query: 331 cttgagatgctttgctggatctatggatggctgtccatggtgcaggtagtagtacgtgca 390 |||||||| || ||||| ||| ||||||| ||||||||||||| ||| |||| ||||| Sbjct: 32164537 cttgagatttttcgctggctctttggatggttgtccatggtgcaagtaatagtgagtgca 32164478 Query: 391 atcatacatcacataccccagcaggccaccggcgaatagcgcaggggtggtagatggact 450 |||||||||||||| |||| ||||||||| | ||||||||||| ||| ||| |||| | Sbjct: 32164477 gtcatacatcacatatcccaacaggccaccaccaaatagcgcaggagtgatagttggagt 32164418 Query: 451 ggcaaagaatgctacgacattccagaac 478 || ||||| ||||| | ||||||||| Sbjct: 32164417 tgcgaagaacgctaccagcttccagaac 32164390 Score = 75.8 bits (38), Expect = 2e-10 Identities = 86/102 (84%) Strand = Plus / Minus Query: 231 tcttggacgaaggcaacgtcccgaaaacggcgtcccagagcgaagaggtgatgccgaagc 290 |||| |||| |||||| ||||| |||||| |||||||| || ||||||||||| |||| Sbjct: 32164736 tcttcgacggaggcaatgtcccaaaaacgtaatcccagagtgatgaggtgatgccaaagc 32164677 Query: 291 ccttgtcctgaattctgaaatggtggctgaggtgataccgct 332 | |||| || |||||||| |||||| ||||||||||||||| Sbjct: 32164676 ctttgttttggattctgaagtggtggttgaggtgataccgct 32164635
>gb|AC149429.1| Populus trichocarpa clone Pop1-109D09, complete sequence Length = 94633 Score = 65.9 bits (33), Expect = 1e-07 Identities = 48/53 (90%) Strand = Plus / Minus Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccag 411 ||||| ||||||||||||||||||| ||||| |||||||||||||| ||||| Sbjct: 61415 ggctgaccatggtgcaggtagtagtgagtgcagtcatacatcacatagcccag 61363
>gb|AC027133.3| Oryza sativa (japonica cultivar-group) chromosome 12 clone OSJNBb0003F09, complete sequence Length = 159600 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417 ||||| ||||| ||||| ||||||| ||||| |||||||||||||| |||| |||||| Sbjct: 63667 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 63609
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417 ||||| ||||| ||||| ||||||| ||||| |||||||||||||| |||| |||||| Sbjct: 26938700 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 26938642
>dbj|AK069213.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010G06, full insert sequence Length = 1392 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417 ||||| ||||| ||||| ||||||| ||||| |||||||||||||| |||| |||||| Sbjct: 731 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 673
>dbj|AK061110.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-207-D02, full insert sequence Length = 1438 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417 ||||| ||||| ||||| ||||||| ||||| |||||||||||||| |||| |||||| Sbjct: 753 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 695
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 54.0 bits (27), Expect = 6e-04 Identities = 51/59 (86%) Strand = Plus / Minus Query: 359 ggctgtccatggtgcaggtagtagtacgtgcaatcatacatcacataccccagcaggcc 417 ||||| ||||| ||||| ||||||| ||||| |||||||||||||| |||| |||||| Sbjct: 26866870 ggctgcccatgatgcagatagtagtgtgtgcagtcatacatcacataacccaacaggcc 26866812
>dbj|AP004983.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT04L20, TM0437b, complete sequence Length = 51960 Score = 46.1 bits (23), Expect = 0.14 Identities = 29/31 (93%) Strand = Plus / Minus Query: 530 tccataggatgcttatggtggcatccatgga 560 ||||| ||||||||||||||||| ||||||| Sbjct: 20014 tccatgggatgcttatggtggcagccatgga 19984
>gb|AC115705.13| Mus musculus chromosome 3, clone RP23-390C13, complete sequence Length = 207221 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 441 tagatggactggcaaagaatgc 462 |||||||||||||||||||||| Sbjct: 141511 tagatggactggcaaagaatgc 141490
>gb|AC144548.8| Homo sapiens 12 BAC RP11-478C19 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174974 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 gctgccccagcaggagggaat 514 ||||||||||||||||||||| Sbjct: 31228 gctgccccagcaggagggaat 31248
>emb|AL671118.30| Mouse DNA sequence from clone RP23-256J17 on chromosome X, complete sequence Length = 234055 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 179 actttctcatgcaaagaacacgttt 203 ||||||||||||||||| ||||||| Sbjct: 158672 actttctcatgcaaagagcacgttt 158648
>gb|AC005907.1| Homo sapiens 12q24.1 PAC P443K8 (Rosewell Park Cancer Institute Human Pac Library) complete sequence Length = 36200 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 494 gctgccccagcaggagggaat 514 ||||||||||||||||||||| Sbjct: 24347 gctgccccagcaggagggaat 24367
>dbj|AK134558.1| Mus musculus adult male medulla oblongata cDNA, RIKEN full-length enriched library, clone:6330411P21 product:t-complex-associated-testis-expressed 1-like, full insert sequence Length = 2194 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 179 actttctcatgcaaagaacacgttt 203 ||||||||||||||||| ||||||| Sbjct: 2029 actttctcatgcaaagagcacgttt 2053
>gb|AF104455.1| Homo sapiens chromosome 7qtelo BAC F6, complete sequence Length = 71353 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 361 ctgtccatggtgcaggtagtagta 384 ||||||||||||||||||| |||| Sbjct: 10213 ctgtccatggtgcaggtagaagta 10236
>gb|AC163655.3| Mus musculus BAC clone RP23-264P21 from chromosome 6, complete sequence Length = 185583 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 301 aattctgaaatggtggctga 320 |||||||||||||||||||| Sbjct: 93751 aattctgaaatggtggctga 93770
>emb|Z81088.1|CEF53F1 Caenorhabditis elegans Cosmid F53F1, complete sequence Length = 39478 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 atcgctgccccagcaggagg 510 |||||||||||||||||||| Sbjct: 25992 atcgctgccccagcaggagg 26011
>emb|Z95118.1|HS354J5 Human DNA sequence from clone RP3-354J5 on chromosome 6q21-22 Contains a novel gene and a zinc finger protein pseudogene, complete sequence Length = 134515 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aaaactttctcatgcaaaga 195 |||||||||||||||||||| Sbjct: 46482 aaaactttctcatgcaaaga 46463
>gb|AC154357.2| Mus musculus BAC clone RP23-192E11 from chromosome 9, complete sequence Length = 195151 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 337 atgctttgctggatctatgg 356 |||||||||||||||||||| Sbjct: 44487 atgctttgctggatctatgg 44468
>ref|NM_073924.2| Caenorhabditis elegans F53F1.5 (cuticlin) mRNA, complete cds Length = 871 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 atcgctgccccagcaggagg 510 |||||||||||||||||||| Sbjct: 270 atcgctgccccagcaggagg 289
>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 204425 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 159 acctacaaatcctctctaaa 178 |||||||||||||||||||| Sbjct: 159804 acctacaaatcctctctaaa 159823
>gb|AC092967.5| Homo sapiens 3 BAC RP11-521A24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 179848 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 ccttgtcctgaattctgaaa 310 |||||||||||||||||||| Sbjct: 108606 ccttgtcctgaattctgaaa 108625
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 270 gcgaagaggtgatgccgaag 289 |||||||||||||||||||| Sbjct: 3968520 gcgaagaggtgatgccgaag 3968501
>gb|AC141427.5| Mus musculus BAC clone RP23-100O21 from chromosome 6, complete sequence Length = 187833 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 301 aattctgaaatggtggctga 320 |||||||||||||||||||| Sbjct: 183287 aattctgaaatggtggctga 183268
>gb|AC005771.1|AC005771 Homo sapiens chromosome 17, clone hRPK.1058_G_23, complete sequence Length = 190434 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 333 tgagatgctttgctggatct 352 |||||||||||||||||||| Sbjct: 65463 tgagatgctttgctggatct 65444
>gb|DQ228487.1| Uncultured bacterium 2063G putative membrane protein, putative cardiolipin synthases/phospholipase D, conserved membrane protein, and putative polyketide synthase genes, complete cds; and putative xanthine/uracil permease gene, partial cds Length = 16557 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 408 ccagcaggccaccggcgaat 427 |||||||||||||||||||| Sbjct: 16264 ccagcaggccaccggcgaat 16245
>emb|X74838.1|CECUT2 C.elegans cut-2 gene for cuticlin 2 Length = 1589 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 491 atcgctgccccagcaggagg 510 |||||||||||||||||||| Sbjct: 944 atcgctgccccagcaggagg 963 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,037,268 Number of Sequences: 3902068 Number of extensions: 4037268 Number of successful extensions: 67149 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 66987 Number of HSP's gapped (non-prelim): 158 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)