>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,|
           chloroplast precursor (RuBisCO activase A) (RA A)
          Length = 464

 Score = 86.3 bits (212), Expect(2) = 1e-32
 Identities = 38/38 (100%), Positives = 38/38 (100%)
 Frame = -1

Query: 212 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 99
           GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF
Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464



 Score = 71.6 bits (174), Expect(2) = 1e-32
 Identities = 34/35 (97%), Positives = 34/35 (97%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQDNVKRVQL DTYMSQAALGDANQDAMKTGSFYG
Sbjct: 393 EQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427

>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
           (RubisCO activase alpha form)
          Length = 476

 Score = 66.6 bits (161), Expect(2) = 3e-23
 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%)
 Frame = -1

Query: 215 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 99
           GG+ AQQ G +PVPEGCTD  A NYDPTARSDDGSC+Y F
Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476



 Score = 59.7 bits (143), Expect(2) = 3e-23
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQ+NVKRVQL D YMS+AALGDAN DA+K G+FYG
Sbjct: 403 EQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437

>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 474

 Score = 67.8 bits (164), Expect(2) = 6e-23
 Identities = 29/38 (76%), Positives = 33/38 (86%)
 Frame = -1

Query: 212 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 99
           GKGAQQ  LPVPEGCTD  A+N+DPTARSDDG+C+Y F
Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474



 Score = 57.4 bits (137), Expect(2) = 6e-23
 Identities = 26/35 (74%), Positives = 31/35 (88%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQ+NVKRVQL +TY+SQAALGDAN DA+  G+FYG
Sbjct: 403 EQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437

>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 472

 Score = 63.9 bits (154), Expect(2) = 3e-21
 Identities = 28/36 (77%), Positives = 30/36 (83%)
 Frame = -1

Query: 212 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 105
           GK AQQ +LPV +GCTD  AKNYDPTARSDDGSC Y
Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470



 Score = 55.5 bits (132), Expect(2) = 3e-21
 Identities = 25/35 (71%), Positives = 30/35 (85%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQ+NVKRVQL D YMS AALGDAN+DA+  G+F+G
Sbjct: 401 EQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435

>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 432

 Score = 62.0 bits (149), Expect = 3e-10
 Identities = 28/35 (80%), Positives = 32/35 (91%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQ+NVKRVQL + Y+S+AALGDAN DAMKTGSFYG
Sbjct: 393 EQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427

>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 437

 Score = 60.5 bits (145), Expect = 1e-09
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQ+NVKRVQL D Y+S+AALGDAN DAM TG+FYG
Sbjct: 403 EQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437

>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,|
           chloroplast precursor (RuBisCO activase B) (RA B)
          Length = 425

 Score = 60.1 bits (144), Expect = 1e-09
 Identities = 27/35 (77%), Positives = 31/35 (88%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFYG 260
           EQ+NVKRVQL D Y+S+AALG AN DAMKTG+FYG
Sbjct: 390 EQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424

>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 433

 Score = 57.8 bits (138), Expect = 6e-09
 Identities = 25/34 (73%), Positives = 32/34 (94%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFY 263
           EQ+NVKRVQL D Y+++AALG+AN+DAMKTGSF+
Sbjct: 399 EQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432

>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
           (RubisCO activase beta form)
          Length = 435

 Score = 56.6 bits (135), Expect = 1e-08
 Identities = 26/33 (78%), Positives = 30/33 (90%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSF 266
           EQ+NVKRVQL D YMS+AALGDANQDA+K G+F
Sbjct: 403 EQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435

>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 441

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 23/34 (67%), Positives = 32/34 (94%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFY 263
           EQ+NVKRVQL D Y+++AALG+AN+DA+K+GSF+
Sbjct: 407 EQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440

>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 439

 Score = 54.3 bits (129), Expect = 7e-08
 Identities = 23/34 (67%), Positives = 32/34 (94%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFY 263
           EQ+NVKRVQL D Y+++AALG+AN+DA+K+GSF+
Sbjct: 405 EQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438

>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,|
           chloroplast precursor (RuBisCO activase 2) (RA 2)
          Length = 439

 Score = 52.8 bits (125), Expect = 2e-07
 Identities = 23/33 (69%), Positives = 29/33 (87%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSF 266
           EQ+NVKRVQL +TY+ +AALGDAN DA+ TG+F
Sbjct: 407 EQENVKRVQLAETYLKEAALGDANADAINTGNF 439

>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,|
           chloroplast precursor (RuBisCO activase 1) (RA 1)
          Length = 442

 Score = 52.4 bits (124), Expect = 3e-07
 Identities = 23/34 (67%), Positives = 28/34 (82%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTGSFY 263
           EQ+NVKRVQL D Y+ +AALGDAN DA+  GSF+
Sbjct: 407 EQENVKRVQLADKYLKEAALGDANADAINNGSFF 440

>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 459

 Score = 50.1 bits (118), Expect = 1e-06
 Identities = 22/31 (70%), Positives = 27/31 (87%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAALGDANQDAMKTG 272
           EQ+NVKRVQL +TY+ +AALGDAN DA+ TG
Sbjct: 402 EQENVKRVQLAETYLKEAALGDANADAINTG 432

>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,|
           chloroplast precursor (RuBisCO activase) (RA)
          Length = 408

 Score = 31.2 bits (69), Expect = 0.65
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = -2

Query: 364 EQDNVKRVQLXDTYMSQAAL 305
           EQ+NVKRVQL D Y+S A L
Sbjct: 375 EQENVKRVQLADAYLSGAEL 394

>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor|
           XE12/XE47)
          Length = 658

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
 Frame = -1

Query: 272 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 114
           F L + N    PT   S   GGG G ++ T   P G  D N   +D      DG+
Sbjct: 26  FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80

>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor|
          Length = 3695

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 116  CRRRSLPLGRSSWHFGRCNLP 178
            CRR   P GR   H GRCN P
Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134

>CCMF_ARATH (P93286) Putative cytochrome c biogenesis ccmF-like mitochondrial|
           protein
          Length = 442

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = -3

Query: 186 ARAGRLHRPKCQELRPNGKERRR 118
           A+  R  R K Q LRPNG E+RR
Sbjct: 147 AKRERARRRKGQTLRPNGNEQRR 169

>EF1A0_XENLA (P13549) Elongation factor 1-alpha, somatic form (EF-1-alpha-S)|
          Length = 462

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -2

Query: 355 NVKRVQLXDTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 221
           NVK V + D      A    N   M+ GSF    I+  HP  + A
Sbjct: 311 NVKNVSVKDVRRGNVAGDSKNDPPMEAGSFTAQVIILNHPGQIGA 355

>YKB4_YEAST (P34241) Hypothetical 203.3 kDa protein in PUT3-ARC19 intergenic|
            region
          Length = 1764

 Score = 27.7 bits (60), Expect = 7.2
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = -1

Query: 182  VPEGCTDQNAKNYDPTARSD 123
            VPE  TD N  NYD T R D
Sbjct: 1383 VPELYTDSNTNNYDATTRCD 1402

>PBX4_MOUSE (Q99NE9) Pre-B-cell leukemia transcription factor 4 (Homeobox|
           protein PBX4)
          Length = 378

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -1

Query: 269 LLRLENSPYTPTISCCIGGGKGAQQGTLPVPEGCTDQNA 153
           LLRL+N      +S     G+GA  G+   P GC + N+
Sbjct: 88  LLRLDNMLLAEGVSRPEKRGRGAAAGSTATPGGCPNDNS 126

>YD84_SCHPO (Q10409) UPF0293 protein C1F3.04c|
          Length = 288

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 68  KTSDIKSGMLKRCKGSCRRRSLPLGRSSWHFGRCN 172
           ++S+ +S      KGS +    PL  + W FG CN
Sbjct: 4   RSSNRRSNAKDGFKGSNKASKFPLPLAMWDFGHCN 38

>EF1A3_XENLA (P17508) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O1)|
           (EF-1AO1)
          Length = 461

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 355 NVKRVQLXDTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 221
           NVK + + D      A    N   M+ GSF    I+  HP  ++A
Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355

>EF1A2_XENLA (P17507) Elongation factor 1-alpha, oocyte form (EF-1-alpha-O)|
           (EF-1AO) (42S p48)
          Length = 461

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = -2

Query: 355 NVKRVQLXDTYMSQAALGDANQDAMKTGSFYG*KILHTHPPSLAA 221
           NVK + + D      A    N   M+ GSF    I+  HP  ++A
Sbjct: 311 NVKNISVKDIRRGNVAGDSKNDPPMQAGSFTAQVIILNHPGQISA 355

>PURQ_CAUCR (Q9A5F3) Phosphoribosylformylglycinamidine synthase I (EC 6.3.5.3)|
           (FGAM synthase I)
          Length = 220

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 3/57 (5%)
 Frame = +3

Query: 42  WMRCGLR*VKHQILKVACLKGVKAAAVVAPCRWVVVL---GILVGATFRHGQSTLLC 203
           ++RCG    +  ++K       K  AVV  C    VL   G+L GA  R+     +C
Sbjct: 57  YLRCGAMAAQSPVMKEVVSAAGKGVAVVGICNGFQVLTEVGLLPGALLRNAGLKYVC 113


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,889,397
Number of Sequences: 219361
Number of extensions: 1033067
Number of successful extensions: 2700
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2699
length of database: 80,573,946
effective HSP length: 97
effective length of database: 59,295,929
effective search space used: 1423102296
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)