ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62l08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR... 648 0.0
2gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo... 525 e-146
3gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA 525 e-146
4gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5... 412 e-112
5gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR... 408 e-111
6gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form... 392 e-106
7emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat... 240 3e-60
8gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for... 176 3e-41
9dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
10dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
11dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
12dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon... 135 1e-28
13dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s... 135 1e-28
14gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
15gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
16gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb... 133 4e-28
17dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ... 133 4e-28
18dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 133 4e-28
19gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 133 4e-28
20dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l... 133 4e-28
21gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas... 121 2e-24
22dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 7e-24
23gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet... 101 2e-18
24dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
25dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D... 78 2e-11
26gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca... 72 1e-09
27gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox... 68 2e-08
28gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox... 68 2e-08
29gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ... 68 2e-08
30gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ... 68 2e-08
31gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ... 68 2e-08
32gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ... 68 2e-08
33gb|AY110044.1| Zea mays CL1146_1 mRNA sequence 68 2e-08
34gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl... 44 0.31
35gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA... 44 0.31
36gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec... 42 1.2
37dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
38gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complet... 42 1.2
39emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase 42 1.2
40emb|Y10657.1|CLRCAGENE C.littorale rca gene 42 1.2
41gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.2
42emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa... 42 1.2
43gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Synten... 40 4.9
44gb|U60105.1| Bos taurus large conductance calcium-activated pota... 40 4.9
45gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trx... 40 4.9
46gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, ... 40 4.9
47gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet... 40 4.9
48gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete... 40 4.9
49gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp... 40 4.9
50gb|AF026000.2| Sus scrofa calcium-activated potassium channel al... 40 4.9
51ref|NM_174680.2| Bos taurus potassium large conductance calcium-... 40 4.9
52gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 4.9
53dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 4.9
54gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Synten... 40 4.9
55gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN... 40 4.9
56gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN... 40 4.9
57gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN... 40 4.9
58emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ... 40 4.9
59ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ... 40 4.9
60ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smoot... 40 4.9
61gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, ... 40 4.9
62gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone... 40 4.9 
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  648 bits (327), Expect = 0.0
 Identities = 361/368 (98%), Gaps = 4/368 (1%)
 Strand = Plus / Minus

                                                                        
Query: 2    tatttagngntatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 61
            ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625

                                                                        
Query: 62   -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 120
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565

                                                                        
Query: 121  t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 179
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505

                                                                        
Query: 180  ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 238
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445

                                                                        
Query: 239  gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 297
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385

                                                                        
Query: 298  catcacccagagctgcctggctcatgtaggtgtcancaagctgcacacgcttgacattgt 357
            ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325

                    
Query: 358  cctgctcc 365
            ||||||||
Sbjct: 1324 cctgctcc 1317
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>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  525 bits (265), Expect = e-146
 Identities = 338/360 (93%), Gaps = 7/360 (1%)
 Strand = Plus / Minus

                                                                       
Query: 12  tatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----g 65
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||     |
Sbjct: 745 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagg 686

                                                                       
Query: 66  gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 125
            |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 627

                                                                       
Query: 126 gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 185
            ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||
Sbjct: 626 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacagg 567

                                                                       
Query: 186 caaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgta 245
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 caaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgta 507

                                                                       
Query: 246 tggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccc 305
           |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 506 tggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcaccc 447

                                                                       
Query: 306 agagctgcctggctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 446 agagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 387
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>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  525 bits (265), Expect = e-146
 Identities = 338/360 (93%), Gaps = 7/360 (1%)
 Strand = Plus / Minus

                                                                        
Query: 12   tatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta-----g 65
            |||||||||||||||||||||||||||||||||||||||||||| |||||||||     |
Sbjct: 1595 tatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaagg 1536

                                                                        
Query: 66   gtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 125
             |||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 1535 ataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgtc 1477

                                                                        
Query: 126  gctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacggg 185
             ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || ||
Sbjct: 1476 actcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacagg 1417

                                                                        
Query: 186  caaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgta 245
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1416 caaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgta 1357

                                                                        
Query: 246  tggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcaccc 305
            |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 1356 tggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcaccc 1297

                                                                        
Query: 306  agagctgcctggctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1296 agagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 1237
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>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  412 bits (208), Expect = e-112
 Identities = 212/214 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatttagngntatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 60
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7736 atatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 7677

                                                                        
Query: 61   ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7676 ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 7617

                                                                        
Query: 121  tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7616 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 7557

                                              
Query: 181  acgggcaaagtaccttgctgtgctcctttacctc 214
            ||||||||||||||||||||||||||||||||||
Sbjct: 7556 acgggcaaagtaccttgctgtgctcctttacctc 7523



 Score =  303 bits (153), Expect = 2e-79
 Identities = 155/156 (99%)
 Strand = Plus / Minus

                                                                        
Query: 210  acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 269
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296

                                                                        
Query: 270  gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 329
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236

                                                
Query: 330  tcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| ||||||||||||||||||||||||||||||||
Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcc 7200



 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 336  agctgcacacgcttgacattgtcctgctcc 365
            ||||||||||||||||| || |||||||||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcc 3932
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>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score =  408 bits (206), Expect = e-111
 Identities = 210/212 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    atatttagngntatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 60
            |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1376 atatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggactta 1317

                                                                        
Query: 61   ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1316 ggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1257

                                                                        
Query: 121  tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1256 tcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggc 1197

                                            
Query: 181  acgggcaaagtaccttgctgtgctcctttacc 212
            ||||||||||||||||||||||||||||||||
Sbjct: 1196 acgggcaaagtaccttgctgtgctcctttacc 1165



 Score =  204 bits (103), Expect = 1e-49
 Identities = 105/106 (99%)
 Strand = Plus / Minus

                                                                        
Query: 260  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 319
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108

                                                          
Query: 320  catgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcc 1062
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>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  392 bits (198), Expect = e-106
 Identities = 313/348 (89%), Gaps = 9/348 (2%)
 Strand = Plus / Minus

                                                                        
Query: 25   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 78
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 79   -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 137
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 138  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 197
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                                                                        
Query: 198  ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 257
             ||||||||||||||||||||||||||||||||||||||||  ||||||| ||| | |||
Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgg--gtgtatgaagagtgttc 1356

                                                                        
Query: 258  taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 317
            |||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||
Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296

                                                            
Query: 318  ctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            |||||||| |||||  ||||||||||||||||||||||||||||||||
Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcc 1248
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>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  240 bits (121), Expect = 3e-60
 Identities = 126/128 (98%)
 Strand = Plus / Minus

                                                                       
Query: 238 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 297
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249

                                                                       
Query: 298 catcacccagagctgcctggctcatgtaggtgtcancaagctgcacacgcttgacattgt 357
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189

                   
Query: 358 cctgctcc 365
           ||||||||
Sbjct: 188 cctgctcc 181
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>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  176 bits (89), Expect = 3e-41
 Identities = 119/129 (92%)
 Strand = Plus / Minus

                                                                        
Query: 84   aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 143
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 144  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 203
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                     
Query: 204  tcctttacc 212
            |||||||||
Sbjct: 1369 tcctttacc 1361



 Score =  165 bits (83), Expect = 1e-37
 Identities = 100/106 (94%)
 Strand = Plus / Minus

                                                                        
Query: 260  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 319
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304

                                                          
Query: 320  catgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            |||||| |||||  ||||||||||||||||||||||||||||||||
Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcc 1258
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>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                                                        
Query: 153  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395

                      
Query: 210  acctcctcct 219
             |||||||||
Sbjct: 1394 ccctcctcct 1385



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1204
to top
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                                                        
Query: 153  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433

                      
Query: 210  acctcctcct 219
             |||||||||
Sbjct: 1432 ccctcctcct 1423



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1242
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>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                                                        
Query: 153  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432

                      
Query: 210  acctcctcct 219
             |||||||||
Sbjct: 1431 ccctcctcct 1422



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1241
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>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                                                        
Query: 153  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216

                      
Query: 210  acctcctcct 219
             |||||||||
Sbjct: 1215 ccctcctcct 1206



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1025
to top
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  135 bits (68), Expect = 1e-28
 Identities = 115/130 (88%), Gaps = 3/130 (2%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                                                        
Query: 153  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437

                      
Query: 210  acctcctcct 219
             |||||||||
Sbjct: 1436 ccctcctcct 1427



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1246
to top
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 93     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 153    ggcattttggtcggtgcaaccttccggcacgggca 187
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                          
Query: 256    tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315
              |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365

                                                                
Query: 316    ggctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
               ||||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 108415



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 111    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 171    accttccggcacggg 185
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127
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>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 93    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 153   ggcattttggtcggtgcaaccttccggcacgggca 187
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                         
Query: 256   tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315
             |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242

                                                               
Query: 316   ggctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
              ||||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 30292



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 111   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 171   accttccggcacggg 185
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004
to top
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 153  ggcattttggtcggtgcaaccttccggcacgggca 187
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1210
to top
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                               
Query: 153  ggcattttggtcggtgcaaccttccggcacgggca 187
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                        
Query: 261  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 320
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250

                                                         
Query: 321  atgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            | |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1205
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 93       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 153      ggcattttggtcggtgcaaccttccggcacgggca 187
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                            
Query: 256      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504

                                                                  
Query: 316      ggctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
                 ||||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 28303554



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 111      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 171      accttccggcacggg 185
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 93       tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 153      ggcattttggtcggtgcaaccttccggcacgggca 187
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 92/110 (83%)
 Strand = Plus / Plus

                                                                            
Query: 256      tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 315
                |||||||||||||||||||||||||||| || ||   |||||| ||||| ||||| ||||
Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953

                                                                  
Query: 316      ggctcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
                 ||||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 28286003



 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 111      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 170
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 171      accttccggcacggg 185
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715
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>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  133 bits (67), Expect = 4e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                               
Query: 153  ggcattttggtcggtgcaaccttccggcacgggca 187
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 87/105 (82%)
 Strand = Plus / Minus

                                                                        
Query: 261  ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 320
            ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||||
Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285

                                                         
Query: 321  atgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            | |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1240
to top
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 2e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 99  aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 158
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 159 ttggtcggtgcaaccttccggcacgggca 187
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5
to top
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  119 bits (60), Expect = 7e-24
 Identities = 114/130 (87%), Gaps = 4/130 (3%)
 Strand = Plus / Minus

                                                                        
Query: 93   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                                                        
Query: 153  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 209
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444

                      
Query: 210  acctcctcct 219
             |||||||||
Sbjct: 1443 ccctcctcct 1434



 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                        
Query: 259  aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
            ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300

                                                           
Query: 319  tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 1253
to top
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 2e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 93  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 153 ggcattttggtcggtgcaaccttccggcacgggca 187
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 93      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 153     ggcattttggtcggtgcaaccttccggcacgggca 187
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
to top
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 93    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 152
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 153   ggcattttggtcggtgcaaccttccggcacgggca 187
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
to top
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score = 71.9 bits (36), Expect = 1e-09
 Identities = 89/107 (83%)
 Strand = Plus / Minus

                                                                       
Query: 259 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 318
           ||||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| ||
Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506

                                                          
Query: 319 tcatgtaggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
           ||| |||    ||| | ||||||||||||||||| || |||||||||
Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctcc 459
to top
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                       
Query: 265 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 324
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                    
Query: 325 aggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
           |  ||||| ||||||||||||||||||| || |||||||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctcc 819
to top
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                        
Query: 265  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 324
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                     
Query: 325  aggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            |  ||||| ||||||||||||||||||| || |||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctcc 1214
to top
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 103  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 163  tcggtgcaaccttc 176
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377
to top
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 103  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 163  tcggtgcaaccttc 176
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202
to top
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 103  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 163  tcggtgcaaccttc 176
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076
to top
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 103  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 162
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 163  tcggtgcaaccttc 176
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232
to top
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 84/101 (83%)
 Strand = Plus / Minus

                                                                        
Query: 265  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 324
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                     
Query: 325  aggtgtcancaagctgcacacgcttgacattgtcctgctcc 365
            |  ||||| ||||||||||||||||||| || |||||||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctcc 1214
to top
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 298   catcacccagagctgcctggct 319
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254
to top
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 44.1 bits (22), Expect = 0.31
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 336  agctgcacacgcttgacattgtcctgctcc 365
            ||||||||||||||||| || |||||||||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcc 1363
to top
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                     
Query: 285  gcatcctggttagcatcacccagagctgcctggctcatgta 325
            |||||||||||||||||||| || || ||||  ||||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgta 1315
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 69      aaacatcagatattaaaagtg 89
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
to top
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence
          Length = 75381

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 220   atgcagcaagagatggtgggt 240
             |||||||||||||||||||||
Sbjct: 63530 atgcagcaagagatggtgggt 63550
to top
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                       
Query: 282 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcancaagctgc 341
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| |||||  | || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                   
Query: 342 acacgcttgacattgtcctgctcc 365
           || | ||| |||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcc 35
to top
>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 336  agctgcacacgcttgacattgtcctgctc 364
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 69      aaacatcagatattaaaagtg 89
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
to top
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 69     aaacatcagatattaaaagtg 89
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423
to top
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 262062

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   cctttacctcctcctatgca 224
             ||||||||||||||||||||
Sbjct: 46359 cctttacctcctcctatgca 46378
to top
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565
to top
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18,
            and complete cds
          Length = 16432

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 205  cctttacctcctcctatgca 224
            ||||||||||||||||||||
Sbjct: 1637 cctttacctcctcctatgca 1656
to top
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence
          Length = 202128

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   cctttacctcctcctatgca 224
             ||||||||||||||||||||
Sbjct: 32945 cctttacctcctcctatgca 32964
to top
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tcagatattaaaagtggcat 93
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077
to top
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 74     tcagatattaaaagtggcat 93
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583
to top
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 74    tcagatattaaaagtggcat 93
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911
to top
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 102  ggtgtaaaggcagctgccgtcgtcgctc 129
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
to top
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 22    aaacatgcccagcaatcgcttgga 45
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
to top
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens
             22q11.2 DGCR Region, complete sequence
          Length = 176974

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 205   cctttacctcctcctatgca 224
             ||||||||||||||||||||
Sbjct: 34662 cctttacctcctcctatgca 34681
to top
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659
to top
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026
to top
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935
to top
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    tggcatgcttaaaaggtgta 107
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254
to top
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 298  catcacccagagctgcctggctca 321
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619
to top
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle)
           (predicted) (Lmod1_predicted), mRNA
          Length = 1920

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 194 cttgctgtgctcctttacctcctc 217
           ||||||| ||||||||||||||||
Sbjct: 648 cttgctgggctcctttacctcctc 625
to top
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence
          Length = 158595

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 205   cctttacctcctcctatgca 224
             ||||||||||||||||||||
Sbjct: 27755 cctttacctcctcctatgca 27736
to top
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 73     atcagatattaaaagtggcatgct 96
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,696,790
Number of Sequences: 3902068
Number of extensions: 2696790
Number of successful extensions: 50472
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 50256
Number of HSP's gapped (non-prelim): 171
length of query: 365
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 343
effective length of database: 17,147,199,772
effective search space: 5881489521796
effective search space used: 5881489521796
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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