ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62l06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 2e-06
2dbj|AK119540.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
3dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
4dbj|AK062059.1| Oryza sativa (japonica cultivar-group) cDNA clon... 60 2e-06
5gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 2e-06
6emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa... 60 2e-06
7dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07,... 46 0.023
8emb|AL732464.19| Mouse DNA sequence from clone RP23-453F10 on ch... 40 1.4
9gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complet... 38 5.7
10dbj|AP001691.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 38 5.7
11dbj|AP000948.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 5.7
12dbj|AP000402.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 38 5.7

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 28       atgaatcaaaatgtgcccaactcctgatgtcagg 61
                |||||||||||| |||||||||||||||||||||
Sbjct: 21699835 atgaatcaaaatatgcccaactcctgatgtcagg 21699802



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>dbj|AK119540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C06, full
            insert sequence
          Length = 1368

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 28   atgaatcaaaatgtgcccaactcctgatgtcagg 61
            |||||||||||| |||||||||||||||||||||
Sbjct: 1189 atgaatcaaaatatgcccaactcctgatgtcagg 1156



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>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full
            insert sequence
          Length = 3861

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                              
Query: 28   atgaatcaaaatgtgcccaactcctgatgtcagg 61
            |||||||||||| |||||||||||||||||||||
Sbjct: 3682 atgaatcaaaatatgcccaactcctgatgtcagg 3649



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>dbj|AK062059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C08, full
           insert sequence
          Length = 404

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                             
Query: 28  atgaatcaaaatgtgcccaactcctgatgtcagg 61
           |||||||||||| |||||||||||||||||||||
Sbjct: 225 atgaatcaaaatatgcccaactcctgatgtcagg 192



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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                                  
Query: 28       atgaatcaaaatgtgcccaactcctgatgtcagg 61
                |||||||||||| |||||||||||||||||||||
Sbjct: 21628180 atgaatcaaaatatgcccaactcctgatgtcagg 21628147



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>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 186030

 Score = 60.0 bits (30), Expect = 2e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                
Query: 28     atgaatcaaaatgtgcccaactcctgatgtcagg 61
              |||||||||||| |||||||||||||||||||||
Sbjct: 112716 atgaatcaaaatatgcccaactcctgatgtcagg 112749



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>dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07, map 22, complete
              sequences
          Length = 184809

 Score = 46.1 bits (23), Expect = 0.023
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 26     tgatgaatcaaaatgtgcccaac 48
              |||||||||||||||||||||||
Sbjct: 133851 tgatgaatcaaaatgtgcccaac 133873



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>emb|AL732464.19| Mouse DNA sequence from clone RP23-453F10 on chromosome 4, complete
              sequence
          Length = 192919

 Score = 40.1 bits (20), Expect = 1.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 25     atgatgaatcaaaatgtgcc 44
              ||||||||||||||||||||
Sbjct: 105574 atgatgaatcaaaatgtgcc 105593



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>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome
          Length = 2401520

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 2       caaactagcnacagctatgcat 23
               ||||||||| ||||||||||||
Sbjct: 2205587 caaactagcaacagctatgcat 2205608



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>dbj|AP001691.1| Homo sapiens genomic DNA, chromosome 21q, section 35/105
          Length = 340000

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 26     tgatgaatcaaaatgtgcccaac 48
              |||||||||||| ||||||||||
Sbjct: 177650 tgatgaatcaaactgtgcccaac 177672



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>dbj|AP000948.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B53P19,
             LL56-APP region, complete sequence
          Length = 79834

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 26    tgatgaatcaaaatgtgcccaac 48
             |||||||||||| ||||||||||
Sbjct: 79470 tgatgaatcaaactgtgcccaac 79492



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>dbj|AP000402.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B76A21,
           LL56-APP region, complete sequence
          Length = 156238

 Score = 38.2 bits (19), Expect = 5.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                  
Query: 26  tgatgaatcaaaatgtgcccaac 48
           |||||||||||| ||||||||||
Sbjct: 822 tgatgaatcaaactgtgcccaac 844


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 651,626
Number of Sequences: 3902068
Number of extensions: 651626
Number of successful extensions: 42784
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 42736
Number of HSP's gapped (non-prelim): 48
length of query: 123
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 102
effective length of database: 17,151,101,840
effective search space: 1749412387680
effective search space used: 1749412387680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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