Clone Name | rbah62l06 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 28 atgaatcaaaatgtgcccaactcctgatgtcagg 61 |||||||||||| ||||||||||||||||||||| Sbjct: 21699835 atgaatcaaaatatgcccaactcctgatgtcagg 21699802
>dbj|AK119540.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-C06, full insert sequence Length = 1368 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 28 atgaatcaaaatgtgcccaactcctgatgtcagg 61 |||||||||||| ||||||||||||||||||||| Sbjct: 1189 atgaatcaaaatatgcccaactcctgatgtcagg 1156
>dbj|AK067367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013106B18, full insert sequence Length = 3861 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 28 atgaatcaaaatgtgcccaactcctgatgtcagg 61 |||||||||||| ||||||||||||||||||||| Sbjct: 3682 atgaatcaaaatatgcccaactcctgatgtcagg 3649
>dbj|AK062059.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-044-C08, full insert sequence Length = 404 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 28 atgaatcaaaatgtgcccaactcctgatgtcagg 61 |||||||||||| ||||||||||||||||||||| Sbjct: 225 atgaatcaaaatatgcccaactcctgatgtcagg 192
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 28 atgaatcaaaatgtgcccaactcctgatgtcagg 61 |||||||||||| ||||||||||||||||||||| Sbjct: 21628180 atgaatcaaaatatgcccaactcctgatgtcagg 21628147
>emb|AL731747.2|CNS08C7W Oryza sativa chromosome 12, . BAC OSJNBa0024C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 186030 Score = 60.0 bits (30), Expect = 2e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 28 atgaatcaaaatgtgcccaactcctgatgtcagg 61 |||||||||||| ||||||||||||||||||||| Sbjct: 112716 atgaatcaaaatatgcccaactcctgatgtcagg 112749
>dbj|BS000097.1| Pan troglodytes chromosome 22 clone:RP43-016D07, map 22, complete sequences Length = 184809 Score = 46.1 bits (23), Expect = 0.023 Identities = 23/23 (100%) Strand = Plus / Plus Query: 26 tgatgaatcaaaatgtgcccaac 48 ||||||||||||||||||||||| Sbjct: 133851 tgatgaatcaaaatgtgcccaac 133873
>emb|AL732464.19| Mouse DNA sequence from clone RP23-453F10 on chromosome 4, complete sequence Length = 192919 Score = 40.1 bits (20), Expect = 1.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 atgatgaatcaaaatgtgcc 44 |||||||||||||||||||| Sbjct: 105574 atgatgaatcaaaatgtgcc 105593
>gb|CP000141.1| Carboxydothermus hydrogenoformans Z-2901, complete genome Length = 2401520 Score = 38.2 bits (19), Expect = 5.7 Identities = 21/22 (95%) Strand = Plus / Plus Query: 2 caaactagcnacagctatgcat 23 ||||||||| |||||||||||| Sbjct: 2205587 caaactagcaacagctatgcat 2205608
>dbj|AP001691.1| Homo sapiens genomic DNA, chromosome 21q, section 35/105 Length = 340000 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tgatgaatcaaaatgtgcccaac 48 |||||||||||| |||||||||| Sbjct: 177650 tgatgaatcaaactgtgcccaac 177672
>dbj|AP000948.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2 clone:B53P19, LL56-APP region, complete sequence Length = 79834 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tgatgaatcaaaatgtgcccaac 48 |||||||||||| |||||||||| Sbjct: 79470 tgatgaatcaaactgtgcccaac 79492
>dbj|AP000402.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B76A21, LL56-APP region, complete sequence Length = 156238 Score = 38.2 bits (19), Expect = 5.7 Identities = 22/23 (95%) Strand = Plus / Plus Query: 26 tgatgaatcaaaatgtgcccaac 48 |||||||||||| |||||||||| Sbjct: 822 tgatgaatcaaactgtgcccaac 844 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 651,626 Number of Sequences: 3902068 Number of extensions: 651626 Number of successful extensions: 42784 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 12 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42736 Number of HSP's gapped (non-prelim): 48 length of query: 123 length of database: 17,233,045,268 effective HSP length: 21 effective length of query: 102 effective length of database: 17,151,101,840 effective search space: 1749412387680 effective search space used: 1749412387680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)