ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63a05 |
|---|---|
| Clone Library Name | barley_pub |
>Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor| Length = 325 Score = 155 bits (392), Expect = 4e-38 Identities = 74/90 (82%), Positives = 82/90 (91%) Frame = -3 Query: 415 DSGVPYTIIRPGGLQDKDGGVRELIVGKDDELLQTDTKAIPRADVAEVCVQALQYEEVKF 236 DSG+PYTIIR GGLQDKDGG+REL+VGKDDELL+T+T+ I RADVAEVCVQALQ EE KF Sbjct: 236 DSGIPYTIIRAGGLQDKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKF 295 Query: 235 KAFDLASKPEGEGTPTKDFKALFSQVTARF 146 KA DLASKPEG GTPTKDFKALF+QVT +F Sbjct: 296 KALDLASKPEGTGTPTKDFKALFTQVTTKF 325
>Y5224_ARATH (Q94EG6) Protein At5g02240| Length = 253 Score = 153 bits (386), Expect = 2e-37 Identities = 74/90 (82%), Positives = 80/90 (88%) Frame = -3 Query: 415 DSGVPYTIIRPGGLQDKDGGVRELIVGKDDELLQTDTKAIPRADVAEVCVQALQYEEVKF 236 DSG PYTIIR GGL DK+GGVREL+VGKDDELLQTDTK +PRADVAEVC+QAL +EE K Sbjct: 164 DSGTPYTIIRAGGLLDKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKN 223 Query: 235 KAFDLASKPEGEGTPTKDFKALFSQVTARF 146 KAFDL SKPEG TPTKDFKALFSQVT+RF Sbjct: 224 KAFDLGSKPEGTSTPTKDFKALFSQVTSRF 253
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 31.6 bits (70), Expect = 0.78 Identities = 16/42 (38%), Positives = 17/42 (40%) Frame = +1 Query: 241 SPLHTAEPEHKLRPHQP*ESP*CQSGEAHHPSRQSAPSLPHP 366 SP H A P H PH P HHP P+ PHP Sbjct: 117 SPYHHAHPYHPPHPHAP------HHHHHHHPPYPYPPAGPHP 152
>YM58_YEAST (Q03695) Hypothetical 35.0 kDa protein in PFK2-HFA1 intergenic| region Length = 313 Score = 30.4 bits (67), Expect = 1.7 Identities = 14/33 (42%), Positives = 18/33 (54%) Frame = -1 Query: 180 SKRCSPRSQPGFESSVQEYTCISSLQGSYCMSV 82 S+ SPR++PG+ S C SS S C SV Sbjct: 225 SQPMSPRTRPGYRPSCSSSNCSSSSSSSACSSV 257
>MBTP1_HUMAN (Q14703) Membrane-bound transcription factor site 1 protease| precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1 protease) (Subtilisin/kexin-isozyme 1) (SKI-1) Length = 1052 Score = 30.0 bits (66), Expect = 2.3 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 6 GVYFSIIDKTIVQLYQPHLHNTQKLTHSYSKILVS*KCKYTPGLMTQNRAVTWENSAL-K 182 GV I+DK Q Y P + ++ SYS +L + +A +WE A Sbjct: 523 GVTGRIVDKPDWQPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGH 582 Query: 183 SLVGVPSPSGFEAKSNA 233 ++ V SP+ E+K+ A Sbjct: 583 VMITVASPAETESKNGA 599
>NO12_MEDTR (P30365) Early nodulin 12 precursor (N-12)| Length = 103 Score = 30.0 bits (66), Expect = 2.3 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +1 Query: 211 VSKPNRM--P*TSPLHTAEPEHKLRPHQ--P*ESP*CQSGEAHHPSRQSAPSLPHPCLAD 378 V+KP+ P P H P HK PH+ P P + H P R+ +P+ HP D Sbjct: 41 VNKPSHKEPPVNKPPHKEPPVHK-PPHKDPPVNKPPQKESPVHKPPRKESPTHRHPPAED 99 Query: 379 H 381 + Sbjct: 100 N 100
>NADD_BUCAI (P57521) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 214 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/30 (40%), Positives = 23/30 (76%), Gaps = 2/30 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPH 355 ++GHI+ +L+ +S++K+I+LP+N PH Sbjct: 16 HYGHINLAEKLAKDISIKKIILLPNNYPPH 45
>MBTP1_CRIGR (Q9Z2A8) Membrane-bound transcription factor site 1 protease| precursor (EC 3.4.21.-) (S1P endopeptidase) (Site-1 protease) (Subtilisin/kexin-isozyme 1) (SKI-1) (Sterol-regulated luminal protease) Length = 1052 Score = 29.6 bits (65), Expect = 2.9 Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 1/77 (1%) Frame = +3 Query: 6 GVYFSIIDKTIVQLYQPHLHNTQKLTHSYSKILVS*KCKYTPGLMTQNRAVTWENSAL-K 182 GV I+DK + Y P + ++ SYS +L + +A +WE A Sbjct: 523 GVTGRIVDKPEWRPYLPQNGDNIEVAFSYSSVLWPWSGYLAISISVTKKAASWEGIAQGH 582 Query: 183 SLVGVPSPSGFEAKSNA 233 ++ V SP+ EAK+ A Sbjct: 583 IMITVASPAETEAKNGA 599
>FADS_BRARE (Q9DEX7) Delta-5/delta-6 fatty acid desaturase (EC 1.14.19.-)| Length = 444 Score = 29.6 bits (65), Expect = 2.9 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 187 KDFKALFSQVTARF*VISPGVYLHF*LTRILLYECVSFCVLW--RCGWYNCTIVLSIM 20 +DF+AL ++ A + ++ L ILL E ++F ++W GW N IV I+ Sbjct: 111 EDFRALRERLEAEGCFKTQPLFFALHLGHILLLEAIAFMMVWYFGTGWINTLIVAVIL 168
>NADD_SALTY (Q8ZQZ8) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)| (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPHSP 361 ++GH+ P L+ + L ++II+P+N PH P Sbjct: 16 HYGHLKPVETLANLIGLSRVIIMPNNVPPHRP 47
>NADD_SALTI (Q8Z8H7) Nicotinate-nucleotide adenylyltransferase (EC 2.7.7.18)| (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPHSP 361 ++GH+ P L+ + L ++II+P+N PH P Sbjct: 16 HYGHLKPVETLANLIGLSRVIIMPNNVPPHRP 47
>NADD_SALPA (Q5PM85) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPHSP 361 ++GH+ P L+ + L ++II+P+N PH P Sbjct: 16 HYGHLKPVETLANLIGLSRVIIMPNNVPPHRP 47
>NADD_SALCH (Q57RT0) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 213 Score = 29.6 bits (65), Expect = 2.9 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPHSP 361 ++GH+ P L+ + L ++II+P+N PH P Sbjct: 16 HYGHLKPVETLANLIGLSRVIIMPNNVPPHRP 47
>HMEN_ANOGA (O02491) Segmentation polarity homeobox protein engrailed| Length = 596 Score = 29.3 bits (64), Expect = 3.8 Identities = 15/46 (32%), Positives = 17/46 (36%) Frame = +1 Query: 229 MP*TSPLHTAEPEHKLRPHQP*ESP*CQSGEAHHPSRQSAPSLPHP 366 MP P H P H PH P HHP +Q +P P Sbjct: 87 MPAQPPHHHQHPHHHQLPHHP--------HHQHHPQQQPSPQTSPP 124
>GLI1_HUMAN (P08151) Zinc finger protein GLI1 (Glioma-associated oncogene)| (Oncogene GLI) Length = 1106 Score = 28.5 bits (62), Expect = 6.6 Identities = 34/95 (35%), Positives = 36/95 (37%), Gaps = 20/95 (21%) Frame = +1 Query: 148 TGL*PGRTAL*NL*SGCPRL------QVSKPNRMP*TSP---------LHTAE-PEHK-- 273 +GL PG AL S CPRL QV P S H +E P H Sbjct: 787 SGLYPGPKALGGTYSQCPRLEHYGQVQVKPEQGCPVGSDSTGLAPCLNAHPSEGPPHPQP 846 Query: 274 LRPHQP*ESP*--CQSGEAHHPSRQSAPSLPHPCL 372 L H P SP QSG P PS P PCL Sbjct: 847 LFSHYPQPSPPQYLQSGPYTQPPPDYLPSEPRPCL 881
>NO12B_MEDSA (Q40339) Early nodulin 12B precursor (N-12B)| Length = 113 Score = 28.5 bits (62), Expect = 6.6 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 2/52 (3%) Frame = +1 Query: 232 P*TSPLHTAEPEHKLRPHQ--P*ESP*CQSGEAHHPSRQSAPSLPHPCLADH 381 P P H P HK PH+ P P + H P R+ P+ HP D+ Sbjct: 60 PVNKPRHKEPPVHK-PPHKDPPVNKPPQKESPVHKPPRKEPPTHKHPPAEDN 110
>NADD_YERPE (Q8ZDG1) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 220 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 2/32 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPHSP 361 ++GH+ P L+ V L+ +I+LP++ PH P Sbjct: 22 HYGHLKPVEALAQQVGLQHIILLPNHVPPHRP 53
>NADD_BUCAP (Q8K9B7) Probable nicotinate-nucleotide adenylyltransferase (EC| 2.7.7.18) (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) Length = 216 Score = 28.1 bits (61), Expect = 8.6 Identities = 12/30 (40%), Positives = 22/30 (73%), Gaps = 2/30 (6%) Frame = +2 Query: 272 NFGHISPRNRLS--VSLEKLIILPDNQLPH 355 ++GHI+ +LS +S++K+I+LP+ PH Sbjct: 16 HYGHITSAEKLSREISIKKIILLPNYGPPH 45 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 61,176,173 Number of Sequences: 219361 Number of extensions: 1191409 Number of successful extensions: 3215 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 3142 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3214 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2228238148 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
