ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_185166.1| Oryza sativa (japonica cultivar-group), mRNA 264 2e-67
2dbj|AK104209.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
3dbj|AK104151.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
4dbj|AK069405.1| Oryza sativa (japonica cultivar-group) cDNA clon... 264 2e-67
5gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 125 1e-25
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
7gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genom... 125 1e-25
8ref|XM_511759.1| PREDICTED: Pan troglodytes hypothetical protein... 44 0.36
9ref|XM_467225.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.36
10ref|XM_742412.1| Aspergillus fumigatus Af293 maltase (Afu8g07070... 44 0.36
11dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
12dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic D... 44 0.36
13emb|AL607024.17| Mouse DNA sequence from clone RP23-194P5 on chr... 42 1.4
14emb|AL604066.9| Mouse DNA sequence from clone RP23-174M12 on chr... 42 1.4
15emb|BX322623.7| Zebrafish DNA sequence from clone CH211-256I14 i... 42 1.4
16gb|AC096772.3| Homo sapiens BAC clone RP11-801F7 from 2, complet... 42 1.4
17emb|BX294386.5| Zebrafish DNA sequence from clone CH211-207B9 in... 42 1.4
18dbj|AP006363.1| Lotus japonicus genomic DNA, chromosome 1, clone... 42 1.4
19gb|AC103358.7| Mus musculus chromosome 19, clone RP24-358I11, co... 40 5.6
20ref|XM_585994.2| PREDICTED: Bos taurus similar to TC10/CDC42 GTP... 40 5.6
21gb|AE008970.1| Agrobacterium tumefaciens str. C58 AT plasmid sec... 40 5.6
22gb|AE007918.1| Agrobacterium tumefaciens str. C58 plasmid AT, se... 40 5.6
23gb|AC129016.4| Mus musculus BAC clone RP24-389J11 from chromosom... 40 5.6
24gb|AC157907.2| Mus musculus chromosome 19, clone RP23-79H21, com... 40 5.6
25gb|AE011893.1| Xanthomonas axonopodis pv. citri str. 306, secti... 40 5.6
26emb|BX537118.12| Zebrafish DNA sequence from clone CH211-202N8, ... 40 5.6
27gb|AC153537.4| Mus musculus 10 BAC RP23-283A2 (Roswell Park Canc... 40 5.6
28emb|AL929391.10| Zebrafish DNA sequence from clone CH211-155I14 ... 40 5.6
29emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chr... 40 5.6
30gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome 40 5.6

>ref|NM_185166.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 966

 Score =  264 bits (133), Expect = 2e-67
 Identities = 244/281 (86%)
 Strand = Plus / Minus

                                                                       
Query: 137 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 780 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 721

                                                                       
Query: 197 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
           |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 720 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 661

                                                                       
Query: 257 cagagcctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctg 316
           ||| ||||||||||||||||| || |||||||| || ||||| | ||| ||||| |||||
Sbjct: 660 cagggcctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctg 601

                                                                       
Query: 317 gagaagctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcag 376
           |||||| ||||| || || || ||||||| ||||||||||||||| || |||||||||||
Sbjct: 600 gagaagttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcag 541

                                                    
Query: 377 accaccaggccttatgattgtataaggaactccactgtctg 417
           ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 540 accaccaggccttattattgtataagggactccactgtctg 500



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>dbj|AK104209.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-305-C03, full
           insert sequence
          Length = 1036

 Score =  264 bits (133), Expect = 2e-67
 Identities = 244/281 (86%)
 Strand = Plus / Minus

                                                                       
Query: 137 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 884 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 825

                                                                       
Query: 197 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
           |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 824 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 765

                                                                       
Query: 257 cagagcctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctg 316
           ||| ||||||||||||||||| || |||||||| || ||||| | ||| ||||| |||||
Sbjct: 764 cagggcctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctg 705

                                                                       
Query: 317 gagaagctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcag 376
           |||||| ||||| || || || ||||||| ||||||||||||||| || |||||||||||
Sbjct: 704 gagaagttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcag 645

                                                    
Query: 377 accaccaggccttatgattgtataaggaactccactgtctg 417
           ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 644 accaccaggccttattattgtataagggactccactgtctg 604



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>dbj|AK104151.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-208-E08, full
           insert sequence
          Length = 1076

 Score =  264 bits (133), Expect = 2e-67
 Identities = 244/281 (86%)
 Strand = Plus / Minus

                                                                       
Query: 137 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 884 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 825

                                                                       
Query: 197 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
           |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 824 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 765

                                                                       
Query: 257 cagagcctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctg 316
           ||| ||||||||||||||||| || |||||||| || ||||| | ||| ||||| |||||
Sbjct: 764 cagggcctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctg 705

                                                                       
Query: 317 gagaagctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcag 376
           |||||| ||||| || || || ||||||| ||||||||||||||| || |||||||||||
Sbjct: 704 gagaagttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcag 645

                                                    
Query: 377 accaccaggccttatgattgtataaggaactccactgtctg 417
           ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 644 accaccaggccttattattgtataagggactccactgtctg 604



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>dbj|AK069405.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023017D04, full
           insert sequence
          Length = 1088

 Score =  264 bits (133), Expect = 2e-67
 Identities = 244/281 (86%)
 Strand = Plus / Minus

                                                                       
Query: 137 gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
           |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 896 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 837

                                                                       
Query: 197 gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
           |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 836 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 777

                                                                       
Query: 257 cagagcctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctg 316
           ||| ||||||||||||||||| || |||||||| || ||||| | ||| ||||| |||||
Sbjct: 776 cagggcctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctg 717

                                                                       
Query: 317 gagaagctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcag 376
           |||||| ||||| || || || ||||||| ||||||||||||||| || |||||||||||
Sbjct: 716 gagaagttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcag 657

                                                    
Query: 377 accaccaggccttatgattgtataaggaactccactgtctg 417
           ||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 656 accaccaggccttattattgtataagggactccactgtctg 616



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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  125 bits (63), Expect = 1e-25
 Identities = 111/127 (87%)
 Strand = Plus / Plus

                                                                            
Query: 262      cctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctggagaa 321
                |||||||||||||||| || |||||||| || ||||| | ||| ||||| ||||||||||
Sbjct: 34223119 cctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctggagaa 34223178

                                                                            
Query: 322      gctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcagaccac 381
                | ||||| || || || ||||||| ||||||||||||||| || ||||||||||||||||
Sbjct: 34223179 gttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcagaccac 34223238

                       
Query: 382      caggcct 388
                |||||||
Sbjct: 34223239 caggcct 34223245



 Score =  103 bits (52), Expect = 4e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                            
Query: 137      gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
                |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 34222808 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 34222867

                                                                            
Query: 197      gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
                |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 34222868 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 34222927

                        
Query: 257      cagagcct 264
                ||| ||||
Sbjct: 34222928 cagggcct 34222935



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 386      ccttatgattgtataaggaactccactgtctg 417
                |||||| ||||||||||| |||||||||||||
Sbjct: 34223452 ccttattattgtataagggactccactgtctg 34223483



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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  125 bits (63), Expect = 1e-25
 Identities = 111/127 (87%)
 Strand = Plus / Plus

                                                                            
Query: 262      cctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctggagaa 321
                |||||||||||||||| || |||||||| || ||||| | ||| ||||| ||||||||||
Sbjct: 34313591 cctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctggagaa 34313650

                                                                            
Query: 322      gctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcagaccac 381
                | ||||| || || || ||||||| ||||||||||||||| || ||||||||||||||||
Sbjct: 34313651 gttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcagaccac 34313710

                       
Query: 382      caggcct 388
                |||||||
Sbjct: 34313711 caggcct 34313717



 Score =  103 bits (52), Expect = 4e-19
 Identities = 109/128 (85%)
 Strand = Plus / Plus

                                                                            
Query: 137      gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
                |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 34313280 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 34313339

                                                                            
Query: 197      gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
                |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 34313340 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 34313399

                        
Query: 257      cagagcct 264
                ||| ||||
Sbjct: 34313400 cagggcct 34313407



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                                
Query: 386      ccttatgattgtataaggaactccactgtctg 417
                |||||| ||||||||||| |||||||||||||
Sbjct: 34313924 ccttattattgtataagggactccactgtctg 34313955



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>gb|AC093018.4| Oryza sativa chromosome 3 BAC OSJNBb0081B07 genomic sequence, complete
              sequence
          Length = 143205

 Score =  125 bits (63), Expect = 1e-25
 Identities = 111/127 (87%)
 Strand = Plus / Minus

                                                                          
Query: 262    cctgaacacaaacttcggccacatcagccctaggaatcgccttagtgtcagtctggagaa 321
              |||||||||||||||| || |||||||| || ||||| | ||| ||||| ||||||||||
Sbjct: 111879 cctgaacacaaacttcagcaacatcagctcttggaattgacttcgtgtctgtctggagaa 111820

                                                                          
Query: 322    gctcatcatccttcccgacaatcagctccctcactcccccatccttgtcttgcagaccac 381
              | ||||| || || || ||||||| ||||||||||||||| || ||||||||||||||||
Sbjct: 111819 gttcatcgtcattgccaacaatcaactccctcactcccccgtctttgtcttgcagaccac 111760

                     
Query: 382    caggcct 388
              |||||||
Sbjct: 111759 caggcct 111753



 Score =  103 bits (52), Expect = 4e-19
 Identities = 109/128 (85%)
 Strand = Plus / Minus

                                                                          
Query: 137    gatgactcaaaaccgggctgtgacctgggagaacagcgctttgaaatctttagtcggggt 196
              |||| ||||||| |||||||| ||||||||||||| || |||||| ||||| || || ||
Sbjct: 112190 gatggctcaaaatcgggctgtaacctgggagaacaacgatttgaagtcttttgttggtgt 112131

                                                                          
Query: 197    gccctcgccttcaggtttcgaagccaaatcgaatgccttgaacttcacctcttcatactg 256
              |||   ||||||||| || ||||||||||| ||||||||||||||   ||||||||||||
Sbjct: 112130 gcctgtgccttcaggctttgaagccaaatcaaatgccttgaactttgtctcttcatactg 112071

                      
Query: 257    cagagcct 264
              ||| ||||
Sbjct: 112070 cagggcct 112063



 Score = 48.1 bits (24), Expect = 0.023
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                              
Query: 386    ccttatgattgtataaggaactccactgtctg 417
              |||||| ||||||||||| |||||||||||||
Sbjct: 111546 ccttattattgtataagggactccactgtctg 111515



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>ref|XM_511759.1| PREDICTED: Pan troglodytes hypothetical protein XP_511759
            (LOC454987), mRNA
          Length = 2193

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 230  tgccttgaacttcacctcttcatactgcagagcctgaa 267
            |||||||| |||||||||||| | |||||||| |||||
Sbjct: 1236 tgccttgagcttcacctcttcttcctgcagagtctgaa 1199



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>ref|XM_467225.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 690

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 265 gaacacaaacttcggccacatc 286
           ||||||||||||||||||||||
Sbjct: 355 gaacacaaacttcggccacatc 334



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>ref|XM_742412.1| Aspergillus fumigatus Af293 maltase (Afu8g07070) partial mRNA
          Length = 1752

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 230  tgccttgaacttcacctcttca 251
            ||||||||||||||||||||||
Sbjct: 1614 tgccttgaacttcacctcttca 1635



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 265      gaacacaaacttcggccacatc 286
                ||||||||||||||||||||||
Sbjct: 28290018 gaacacaaacttcggccacatc 28289997



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>dbj|AP004096.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1743_B12
          Length = 175645

 Score = 44.1 bits (22), Expect = 0.36
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 265   gaacacaaacttcggccacatc 286
             ||||||||||||||||||||||
Sbjct: 81775 gaacacaaacttcggccacatc 81754



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>emb|AL607024.17| Mouse DNA sequence from clone RP23-194P5 on chromosome 11 Contains a
              novel gene, the Pafah1b1 gene for platelet-activating
              factor acetylhydrolase isoform 1b beta1 subunit, the 5' end
              of a novel gene and two CpG islands, complete sequence
          Length = 137908

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 365    cttgtcttgcagaccaccaggcctt 389
              ||||||||| |||||||||||||||
Sbjct: 137778 cttgtcttgtagaccaccaggcctt 137802



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>emb|AL604066.9| Mouse DNA sequence from clone RP23-174M12 on chromosome 11 Contains
            the 3' end of a novel gene, the Mnt gene for max binding
            protein, two novel genes, the  Srr gene for serine
            racemase, the 5' end of a novel gene and five CpG
            islands, complete sequence
          Length = 184151

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 365  cttgtcttgcagaccaccaggcctt 389
            ||||||||| |||||||||||||||
Sbjct: 1870 cttgtcttgtagaccaccaggcctt 1894



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>emb|BX322623.7| Zebrafish DNA sequence from clone CH211-256I14 in linkage group 15,
             complete sequence
          Length = 104062

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 6     ggagtttattttagcattatt 26
             |||||||||||||||||||||
Sbjct: 59229 ggagtttattttagcattatt 59249



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>gb|AC096772.3| Homo sapiens BAC clone RP11-801F7 from 2, complete sequence
          Length = 177733

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 251   atactgcagagcctgaacaca 271
             |||||||||||||||||||||
Sbjct: 79403 atactgcagagcctgaacaca 79383



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>emb|BX294386.5| Zebrafish DNA sequence from clone CH211-207B9 in linkage group 8,
             complete sequence
          Length = 117352

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 6     ggagtttattttagcattatt 26
             |||||||||||||||||||||
Sbjct: 22146 ggagtttattttagcattatt 22126



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>dbj|AP006363.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT34B12, TM0147b,
             complete sequence
          Length = 56052

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 309   tcagtctggagaagctcatcatccttccc 337
             ||||||| ||||| |||||||||||||||
Sbjct: 14744 tcagtcttgagaatctcatcatccttccc 14716



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>gb|AC103358.7| Mus musculus chromosome 19, clone RP24-358I11, complete sequence
          Length = 117340

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 76   agcttacacactcatacagt 95
            ||||||||||||||||||||
Sbjct: 8344 agcttacacactcatacagt 8363



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>ref|XM_585994.2| PREDICTED: Bos taurus similar to TC10/CDC42 GTPase-activating protein
            (Sorting nexin 26) (LOC509104), mRNA
          Length = 3380

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 152  ggctgtgacctgggagaaca 171
            ||||||||||||||||||||
Sbjct: 1017 ggctgtgacctgggagaaca 1036



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>gb|AE008970.1| Agrobacterium tumefaciens str. C58 AT plasmid section 45 of 49 of the
            complete sequence
          Length = 11013

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  gaagctcatcatccttcccgacaa 342
            |||||||||||||||||| |||||
Sbjct: 5766 gaagctcatcatccttccagacaa 5743



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>gb|AE007918.1| Agrobacterium tumefaciens str. C58 plasmid AT, section 46 of 50 of
            the complete sequence
          Length = 10945

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 319  gaagctcatcatccttcccgacaa 342
            |||||||||||||||||| |||||
Sbjct: 5767 gaagctcatcatccttccagacaa 5744



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>gb|AC129016.4| Mus musculus BAC clone RP24-389J11 from chromosome 10, complete
             sequence
          Length = 160180

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   aatcagctccctcactcccc 360
             ||||||||||||||||||||
Sbjct: 28555 aatcagctccctcactcccc 28536



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>gb|AC157907.2| Mus musculus chromosome 19, clone RP23-79H21, complete sequence
          Length = 153518

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 76    agcttacacactcatacagt 95
             ||||||||||||||||||||
Sbjct: 75202 agcttacacactcatacagt 75183



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>gb|AE011893.1| Xanthomonas axonopodis pv. citri str. 306,  section 271 of 469 of the
            complete genome
          Length = 9601

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 367  tgtcttgcagaccaccaggc 386
            ||||||||||||||||||||
Sbjct: 3007 tgtcttgcagaccaccaggc 2988



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>emb|BX537118.12| Zebrafish DNA sequence from clone CH211-202N8, complete sequence
          Length = 197161

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 10     tttattttagcattattgat 29
              ||||||||||||||||||||
Sbjct: 137990 tttattttagcattattgat 138009



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>gb|AC153537.4| Mus musculus 10 BAC RP23-283A2 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 221267

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 341    aatcagctccctcactcccc 360
              ||||||||||||||||||||
Sbjct: 176957 aatcagctccctcactcccc 176938



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>emb|AL929391.10| Zebrafish DNA sequence from clone CH211-155I14 in linkage group 20,
             complete sequence
          Length = 186458

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     aggagtttattttagcatta 24
             ||||||||||||||||||||
Sbjct: 94202 aggagtttattttagcatta 94183



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>emb|AL807832.6| Mouse DNA sequence from clone RP23-198D21 on chromosome 2, complete
              sequence
          Length = 192480

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 338    gacaatcagctccctcactccccc 361
              ||||||||||||||| ||||||||
Sbjct: 175163 gacaatcagctcccttactccccc 175140



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>gb|AY653733.1| Acanthamoeba polyphaga mimivirus, complete genome
          Length = 1181404

 Score = 40.1 bits (20), Expect = 5.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 12     tattttagcattattgataa 31
              ||||||||||||||||||||
Sbjct: 449657 tattttagcattattgataa 449676


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,490,556
Number of Sequences: 3902068
Number of extensions: 3490556
Number of successful extensions: 66159
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 66046
Number of HSP's gapped (non-prelim): 113
length of query: 417
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 395
effective length of database: 17,147,199,772
effective search space: 6773143909940
effective search space used: 6773143909940
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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