ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah63a03 |
|---|---|
| Clone Library Name | barley_pub |
>VDAC1_SOLTU (P42055) 34 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 34) Length = 275 Score = 114 bits (285), Expect = 1e-25 Identities = 54/73 (73%), Positives = 62/73 (84%) Frame = -2 Query: 438 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 259 HSFS+NEN ITVGTQH LDPLT++K R NNFG ASAL+QH WRPKS+ T S EVDTK+V+ Sbjct: 203 HSFSTNENIITVGTQHRLDPLTSVKARINNFGKASALLQHEWRPKSLFTVSGEVDTKSVD 262 Query: 258 KSPKFGLALSLKP 220 K KFGLAL+LKP Sbjct: 263 KGAKFGLALALKP 275
>VDAC2_SOLTU (P42056) 36 kDa outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) (POM 36) Length = 275 Score = 114 bits (284), Expect = 1e-25 Identities = 53/73 (72%), Positives = 63/73 (86%) Frame = -2 Query: 438 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 259 HSFSSNENT+T+GTQH LDPLTT+K R N++G ASALIQH WRPKS+ T S EVDT+A+E Sbjct: 203 HSFSSNENTLTIGTQHLLDPLTTVKARVNSYGKASALIQHEWRPKSLFTISGEVDTRAIE 262 Query: 258 KSPKFGLALSLKP 220 KS K GLA++LKP Sbjct: 263 KSAKIGLAVALKP 275
>VDAC_PEA (P42054) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 275 Score = 112 bits (279), Expect = 5e-25 Identities = 53/74 (71%), Positives = 62/74 (83%) Frame = -2 Query: 441 AHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV 262 +H FS+ ENT T+GTQH LDPLTT+KGR N G ASALIQH WRPKS+IT S+EVDTKA+ Sbjct: 202 SHRFSTKENTFTLGTQHALDPLTTVKGRVTNSGKASALIQHEWRPKSLITISSEVDTKAI 261 Query: 261 EKSPKFGLALSLKP 220 EKS K GL+L+LKP Sbjct: 262 EKSAKIGLSLALKP 275
>VDAC1_ORYSA (Q6K548) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 273 Score = 110 bits (274), Expect = 2e-24 Identities = 51/73 (69%), Positives = 61/73 (83%) Frame = -2 Query: 438 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 259 HSFSSNEN++T GTQH LDPLT +K R+NN G ASAL+QH WRPKSV T S EVDTKA++ Sbjct: 201 HSFSSNENSLTFGTQHTLDPLTVVKARFNNSGKASALLQHEWRPKSVWTISAEVDTKAID 260 Query: 258 KSPKFGLALSLKP 220 KS K G+A++LKP Sbjct: 261 KSSKVGIAVALKP 273
>VDAC2_ARATH (Q9SMX3) Outer mitochondrial membrane protein porin 2| (Voltage-dependent anion-selective channel protein 2) (VDAC 2) Length = 273 Score = 107 bits (266), Expect = 2e-23 Identities = 49/74 (66%), Positives = 61/74 (82%) Frame = -2 Query: 441 AHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV 262 +H+F++ EN ITVGTQH LDPLTT+K R NN G+A+ALIQH WRPKS T S EVD+KA+ Sbjct: 200 SHNFTTKENAITVGTQHALDPLTTVKARVNNAGVANALIQHEWRPKSFFTVSGEVDSKAI 259 Query: 261 EKSPKFGLALSLKP 220 +KS K G+AL+LKP Sbjct: 260 DKSAKVGIALALKP 273
>VDAC1_ARATH (Q9SRH5) Outer mitochondrial membrane protein porin 1| (Voltage-dependent anion-selective channel protein 1) (VDAC 1) Length = 275 Score = 104 bits (259), Expect = 1e-22 Identities = 49/74 (66%), Positives = 60/74 (81%) Frame = -2 Query: 441 AHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV 262 +H SS ++TITVGTQH LDPLT++K R N+ GIASALIQH W+PKS T S EVDTK++ Sbjct: 202 SHKLSSKDSTITVGTQHSLDPLTSVKARVNSAGIASALIQHEWKPKSFFTISGEVDTKSI 261 Query: 261 EKSPKFGLALSLKP 220 +KS K GLAL+LKP Sbjct: 262 DKSAKVGLALALKP 275
>VDAC1_WHEAT (P46274) Outer mitochondrial membrane protein porin| (Voltage-dependent anion-selective channel protein) (VDAC) Length = 275 Score = 103 bits (258), Expect = 1e-22 Identities = 50/73 (68%), Positives = 59/73 (80%) Frame = -2 Query: 438 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 259 HSFSSNEN++T GTQH LDPLT +K R NN G ASALIQH + PKS+ T S EVDTKA+E Sbjct: 203 HSFSSNENSLTFGTQHTLDPLTLVKARINNSGKASALIQHEFMPKSLCTISAEVDTKAIE 262 Query: 258 KSPKFGLALSLKP 220 KS K G+A++LKP Sbjct: 263 KSSKVGIAIALKP 275
>VDAC_MAIZE (P42057) Outer plastidial membrane protein porin (Voltage-dependent| anion-selective channel protein) (VDAC) Length = 277 Score = 101 bits (252), Expect = 7e-22 Identities = 46/73 (63%), Positives = 59/73 (80%) Frame = -2 Query: 441 AHSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV 262 +HS S NE+T+ G+QH LDP TT+K R+NN+G+ASAL+QH WRPKS +T S +VDTKA+ Sbjct: 204 SHSMSRNESTLIFGSQHSLDPHTTIKTRFNNYGMASALVQHEWRPKSFVTISGDVDTKAI 263 Query: 261 EKSPKFGLALSLK 223 EKS K GL+L LK Sbjct: 264 EKSTKVGLSLVLK 276
>VDAC_SCHPO (Q9P544) Probable outer mitochondrial membrane protein porin| Length = 282 Score = 33.1 bits (74), Expect = 0.31 Identities = 18/68 (26%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -2 Query: 429 SSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAV-EKS 253 ++N T+ + +++ LD T +KG+ N+ G+A+ RP + ++DT+ + + + Sbjct: 212 TANAITLELASKYALDKDTFVKGKINSAGVATLSYFQTVRPGVTVGLGLQLDTQRLGQPA 271 Query: 252 PKFGLALS 229 K GL+L+ Sbjct: 272 HKAGLSLA 279
>VDAC_NEUCR (P07144) Outer mitochondrial membrane protein porin| Length = 283 Score = 30.4 bits (67), Expect = 2.0 Identities = 14/62 (22%), Positives = 33/62 (53%) Frame = -2 Query: 438 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 259 +S + N + V T++ +DP++ +KG+ N+ G+A+ R + DT+ ++ Sbjct: 210 NSKTGNTVGLEVATKYRIDPVSFVKGKINDRGVAAIAYNVLLREGVTLGVGASFDTQKLD 269 Query: 258 KS 253 ++ Sbjct: 270 QA 271
>TO401_ARATH (Q9LHE5) Mitochondrial import receptor subunit TOM40 homolog 1| (Translocase of outer membrane 40 kDa subunit homolog 1) Length = 308 Score = 29.3 bits (64), Expect = 4.5 Identities = 20/71 (28%), Positives = 38/71 (53%) Frame = -2 Query: 438 HSFSSNENTITVGTQHELDPLTTLKGRYNNFGIASALIQHAWRPKSVITFSTEVDTKAVE 259 +++ S + T +VG + L ++G+ ++ G+ASAL++ S E+D K + Sbjct: 240 YNYFSRDVTASVGYDYMLRQ-ARVRGKIDSNGVASALLEERLSMGLNFLLSAELDHK--K 296 Query: 258 KSPKFGLALSL 226 K KFG L++ Sbjct: 297 KDYKFGFGLTV 307
>TDHA_HAEIN (P44523) TonB-dependent heme receptor A precursor| Length = 744 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 428 RATRTPSPWGRSTSWTP*PPLRGATTTLASQV 333 R T +PWG++++W P R ATT L V Sbjct: 620 RDTSPRNPWGKTSTWIAEIPPRKATTALGFNV 651
>PEX5_PICPA (P33292) Peroxisomal targeting signal receptor (Peroxisomal protein| PAS8) (Peroxin-5) (PTS1 receptor) Length = 576 Score = 28.9 bits (63), Expect = 5.9 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 39 PVAHINWVETPRVAG*KRQISLSHHQSWALQVPSVQA-LFTGPRADGTKML 188 PV NW + + AG + Q HQ L VP V+A ++ G R G M+ Sbjct: 122 PVQSTNWAQDFQQAGPEVQHHAQQHQHPILSVPGVRAGIYGGGRLMGGSMM 172
>DYR1A_RAT (Q63470) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.2) (Protein kinase minibrain homolog) (MNBH) (RP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 28.9 bits (63), Expect = 5.9 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 122 GITSSVRPSFVHWTKS*WYQNASILMHPQIPH-QGLSDRASPNL 250 G TS+ +PS V S + A + M Q+PH SDR PN+ Sbjct: 5 GETSACKPSSVRLAPSFSFHAAGLQMAAQMPHSHQYSDRRQPNI 48
>WDR33_HUMAN (Q9C0J8) WD-repeat protein 33 (WD-repeat protein WDC146)| Length = 1336 Score = 28.9 bits (63), Expect = 5.9 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = -3 Query: 437 TASRATRTPSPWGRSTSWTP*PPLRGAT 354 T SR R+ S WGR ++ PP RGA+ Sbjct: 1302 TPSRGGRSGSNWGRGSNMNSGPPRRGAS 1329
>DYR1A_HUMAN (Q13627) Dual specificity tyrosine-phosphorylation-regulated kinase| 1A (EC 2.7.12.1) (Protein kinase minibrain homolog) (MNBH) (HP86) (Dual specificity YAK1-related kinase) Length = 763 Score = 28.5 bits (62), Expect = 7.7 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = +2 Query: 122 GITSSVRPSFVHWTKS*WYQNASILMHPQIPH-QGLSDRASPNL 250 G TS+ +PS V S + A + M Q+PH SDR PN+ Sbjct: 5 GETSACKPSSVRLAPSFSFHAAGLQMAGQMPHSHQYSDRRQPNI 48
>TDHA_HAEI8 (Q4QP67) TonB-dependent heme receptor A precursor| Length = 745 Score = 28.5 bits (62), Expect = 7.7 Identities = 12/32 (37%), Positives = 18/32 (56%) Frame = -3 Query: 428 RATRTPSPWGRSTSWTP*PPLRGATTTLASQV 333 R T +PWG++++W P R ATT L + Sbjct: 621 RDTSPRNPWGKTSTWIAEIPPRKATTALGFNI 652 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,673,359 Number of Sequences: 219361 Number of extensions: 1216396 Number of successful extensions: 2987 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 2939 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2986 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2628831825 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
