ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63a03
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent... 579 e-162
2ref|XM_475771.1| Oryza sativa (japonica cultivar-group), predic... 131 2e-27
3gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome... 131 2e-27
4dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 131 2e-27
5emb|AJ251562.1|OSA251562 Oryza sativa mRNA for voltage-dependent... 131 2e-27
6dbj|AK071833.1| Oryza sativa (japonica cultivar-group) cDNA clon... 131 2e-27
7gb|AF178952.1|AF178952 Zea mays voltage-dependent anion channel ... 123 5e-25
8gb|AY104198.1| Zea mays PCO099812 mRNA sequence 123 5e-25
9ref|NM_191753.1| Oryza sativa (japonica cultivar-group), predic... 82 2e-12
10dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
11dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
12dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic D... 82 2e-12
13ref|XM_450604.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.006
14gb|BT012680.1| Lycopersicon esculentum clone 113526R, mRNA sequence 50 0.006
15dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
16dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.006
17emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent an... 50 0.006
18dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
19dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
20dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.006
21gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, c... 46 0.096
22emb|X74799.1|PAAS4EF P.anserina AS4 gene for translation elongat... 46 0.096
23dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.096
24dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone... 46 0.096
25ref|XM_418162.1| PREDICTED: Gallus gallus similar to type I hair... 42 1.5
26gb|BT014102.1| Lycopersicon esculentum clone 133206R, mRNA sequence 42 1.5
27emb|X80387.1|STPORIN2 S.tuberosum pPOM36II mRNA for 36kDa porinII 42 1.5
28emb|X80386.1|STPORIN1 S.tuberosum pPOM34 mRNA for mitochondrial ... 42 1.5
29emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA 42 1.5
30gb|AC183761.3| Pan troglodytes BAC clone CH251-710C5 from chromo... 40 5.9
31gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 40 5.9
32gb|AY445665.1| Photorhabdus luminescens putative toxin transport... 40 5.9
33gb|AC092637.2| Homo sapiens BAC clone RP11-358M3 from 7, complet... 40 5.9
34emb|AJ616216.2| Takifugu rubripes ifng gene for interferon gamma... 40 5.9
35emb|X80388.1|STPORIN3 S.tuberosum pPOM36I mRNA for 36kDA porinI 40 5.9
36gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 40 5.9
37dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 5.9 
>emb|X82149.1|TAVDAC2 T.aestivum VDAC2 mRNA for voltage dependent anion channel
          Length = 1174

 Score =  579 bits (292), Expect = e-162
 Identities = 393/422 (93%), Gaps = 6/422 (1%)
 Strand = Plus / Minus

                                                                        
Query: 27   cgtgcataacggccagtagcacatatcaactgggtagaaa--cccctcgggtag--cagg 82
            ||||||||||| ||||||||||| |||||| |||||||||  |||||| |||||  ||||
Sbjct: 1018 cgtgcataacgaccagtagcacagatcaacagggtagaaaaccccctcaggtagaacagg 959

                                                                        
Query: 83   ctaaaaa-cgacagataagtttgtcgcatcaccaaagttgggcattacaagttccgtccg 141
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 958  ctaaaaaacgacagataagtttgtcgcatcaccaaagttgggcattacaagttccgtctg 899

                                                                        
Query: 142  tccaa-gctttgttcactggaccaagagctgatggtaccaaaatgctagcatcctaatgc 200
            ||||| ||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||
Sbjct: 898  tccaaagctttgttcgctggaccaagagctgatggtaccgaaatgctagcatcctaacgc 839

                                                                        
Query: 201  acccgcaaatcccacatcagggcttgagtgacagggccagcccgaacttggggctcttct 260
            |||||| ||||||| |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 838  acccgcgaatcccaaatcagggcttgagtgacagggccagcccaaacttggggctcttct 779

                                                                        
Query: 261  caacggccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgt 320
            ||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 778  caatggccttggtgtcaacctcggtggagaaggtgatgagagacttgggcctccacgcgt 719

                                                                        
Query: 321  gctggatgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcaggg 380
            ||||||||||||||||||||| ||| ||||||||||| |||||||| |  ||||||||||
Sbjct: 718  gctggatgagcgcacttgcgacgccgaagttgttgtaacgccccttcacagtggtcaggg 659

                                                                        
Query: 381  ggtccagctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtgag 440
            |||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct: 658  ggtccagctcgtgctgcgtcccaatggtgatggtgttctcgttgcttgagaagctgtgag 599

              
Query: 441  cg 442
            ||
Sbjct: 598  cg 597
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>ref|XM_475771.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 843

 Score =  131 bits (66), Expect = 2e-27
 Identities = 174/210 (82%)
 Strand = Plus / Minus

                                                                       
Query: 232 cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 291
           ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 828 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 769

                                                                       
Query: 292 ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 351
           ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 768 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 709

                                                                       
Query: 352 gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 411
           |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 708 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 649

                                         
Query: 412 ggtgttctcgttgctcgagaagctgtgagc 441
            |||||||||||||||||||||||||||||
Sbjct: 648 agtgttctcgttgctcgagaagctgtgagc 619
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>gb|AC097112.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1741_B01,
             complete sequence
          Length = 147704

 Score =  131 bits (66), Expect = 2e-27
 Identities = 174/210 (82%)
 Strand = Plus / Minus

                                                                         
Query: 232   cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 291
             ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 69059 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 69000

                                                                         
Query: 292   ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 351
             ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 68999 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 68940

                                                                         
Query: 352   gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 411
             |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 68939 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 68880

                                           
Query: 412   ggtgttctcgttgctcgagaagctgtgagc 441
              |||||||||||||||||||||||||||||
Sbjct: 68879 agtgttctcgttgctcgagaagctgtgagc 68850
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  131 bits (66), Expect = 2e-27
 Identities = 174/210 (82%)
 Strand = Plus / Minus

                                                                            
Query: 232      cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 291
                ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 26424368 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 26424309

                                                                            
Query: 292      ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 351
                ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 26424308 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 26424249

                                                                            
Query: 352      gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 411
                |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 26424248 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 26424189

                                              
Query: 412      ggtgttctcgttgctcgagaagctgtgagc 441
                 |||||||||||||||||||||||||||||
Sbjct: 26424188 agtgttctcgttgctcgagaagctgtgagc 26424159
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>emb|AJ251562.1|OSA251562 Oryza sativa mRNA for voltage-dependent anion channel (VDAC2 gene)
          Length = 1189

 Score =  131 bits (66), Expect = 2e-27
 Identities = 174/210 (82%)
 Strand = Plus / Minus

                                                                       
Query: 232 cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 291
           ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 867 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 808

                                                                       
Query: 292 ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 351
           ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 807 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 748

                                                                       
Query: 352 gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 411
           |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 747 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 688

                                         
Query: 412 ggtgttctcgttgctcgagaagctgtgagc 441
            |||||||||||||||||||||||||||||
Sbjct: 687 agtgttctcgttgctcgagaagctgtgagc 658
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>dbj|AK071833.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023121K13, full
           insert sequence
          Length = 1231

 Score =  131 bits (66), Expect = 2e-27
 Identities = 174/210 (82%)
 Strand = Plus / Minus

                                                                       
Query: 232 cagggccagcccgaacttggggctcttctcaacggccttggtatcaacctcggtggagaa 291
           ||||| |||||| | ||||| |||||| || | |||||||||||||||||| ||||||| 
Sbjct: 911 cagggacagcccaaccttggagctcttgtcgatggccttggtatcaacctcagtggagat 852

                                                                       
Query: 292 ggtgatgacagacttgggcctccacgcgtgctggatgagcgcacttgcgatgccaaagtt 351
           ||||| ||  |||||||||||  || ||||||||||||||||||| || |||||||||||
Sbjct: 851 ggtgacgagcgacttgggcctgaactcgtgctggatgagcgcactggccatgccaaagtt 792

                                                                       
Query: 352 gttgtagcgccccttaagggtggtcagggggtccagctcgtgctgcgtccccacggtgat 411
           |||| ||||| |||| |  || || ||    |||||  | ||||| ||||| | ||||| 
Sbjct: 791 gttgaagcgcgccttcacagtagtgagttcatccagggcatgctgtgtcccgaaggtgag 732

                                         
Query: 412 ggtgttctcgttgctcgagaagctgtgagc 441
            |||||||||||||||||||||||||||||
Sbjct: 731 agtgttctcgttgctcgagaagctgtgagc 702
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>gb|AF178952.1|AF178952 Zea mays voltage-dependent anion channel protein 2 (vdac2) mRNA,
           complete cds; nuclear gene for mitochondrial product
          Length = 1129

 Score =  123 bits (62), Expect = 5e-25
 Identities = 155/186 (83%)
 Strand = Plus / Minus

                                                                       
Query: 253 gctcttctcaacggccttggtatcaacctcggtggagaaggtgatgacagacttgggcct 312
           ||||||||| | ||||||||| || ||||| ||||||| |||||  |  |||||||||||
Sbjct: 881 gctcttctcgatggccttggtgtccacctccgtggagatggtgaccagtgacttgggcct 822

                                                                       
Query: 313 ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggt 372
           |||| |||| ||||| || |||||||| |||||  |||||||| ||||  |||| |  ||
Sbjct: 821 ccactcgtgttggatcagtgcacttgccatgccgtagttgttgaagcgtgccttcacagt 762

                                                                       
Query: 373 ggtcagggggtccagctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaa 432
           |||||| ||||||||  | ||||||||||| | ||||||||||||| ||||| |||||||
Sbjct: 761 ggtcagagggtccagggcatgctgcgtcccaaaggtgatggtgttcccgttggtcgagaa 702

                 
Query: 433 gctgtg 438
           ||||||
Sbjct: 701 gctgtg 696
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>gb|AY104198.1| Zea mays PCO099812 mRNA sequence
          Length = 1156

 Score =  123 bits (62), Expect = 5e-25
 Identities = 155/186 (83%)
 Strand = Plus / Minus

                                                                       
Query: 253 gctcttctcaacggccttggtatcaacctcggtggagaaggtgatgacagacttgggcct 312
           ||||||||| | ||||||||| || ||||| ||||||| |||||  |  |||||||||||
Sbjct: 915 gctcttctcgatggccttggtgtccacctccgtggagatggtgaccagtgacttgggcct 856

                                                                       
Query: 313 ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggt 372
           |||| |||| ||||| || |||||||| |||||  |||||||| ||||  |||| |  ||
Sbjct: 855 ccactcgtgttggatcagtgcacttgccatgccgtagttgttgaagcgtgccttcacagt 796

                                                                       
Query: 373 ggtcagggggtccagctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaa 432
           |||||| ||||||||  | ||||||||||| | ||||||||||||| ||||| |||||||
Sbjct: 795 ggtcagagggtccagggcatgctgcgtcccaaaggtgatggtgttcccgttggtcgagaa 736

                 
Query: 433 gctgtg 438
           ||||||
Sbjct: 735 gctgtg 730
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>ref|NM_191753.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 954

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Minus

                                                                       
Query: 266 gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 325
           |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 905 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 846

                                                                       
Query: 326 atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 385
           ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 845 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 786

                                                                
Query: 386 agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 438
           ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 785 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 733
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Plus

                                                                            
Query: 266      gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 325
                |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 29763787 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 29763846

                                                                            
Query: 326      atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 385
                ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 29763847 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 29763906

                                                                     
Query: 386      agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 438
                ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 29763907 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 29763959
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>dbj|AP003288.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
            clone:P0683B11
          Length = 155955

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Plus

                                                                        
Query: 266  gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 325
            |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 7882 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 7941

                                                                        
Query: 326  atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 385
            ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 7942 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 8001

                                                                 
Query: 386  agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 438
            ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 8002 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 8054
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>dbj|AP003408.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1131B07
          Length = 109135

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 140/173 (80%)
 Strand = Plus / Plus

                                                                         
Query: 266   gccttggtatcaacctcggtggagaaggtgatgacagacttgggcctccacgcgtgctgg 325
             |||||||| || ||||||| |||||  || | || ||||||||| |||||| ||||||||
Sbjct: 93518 gccttggtgtcgacctcggcggagagcgttaagaaagacttgggtctccactcgtgctgg 93577

                                                                         
Query: 326   atgagcgcacttgcgatgccaaagttgttgtagcgccccttaagggtggtcagggggtcc 385
             ||||| || ||  | |||||   ||||||||||||| |||| | ||| || || ||||||
Sbjct: 93578 atgagggcgctgaccatgccgtggttgttgtagcgcgccttcacggtagtgagagggtcc 93637

                                                                  
Query: 386   agctcgtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtg 438
             ||  |||||||| |||| | | ||| ||||||||| ||| |||||||||||||
Sbjct: 93638 agggcgtgctgcatcccgaagctgagggtgttctccttggtcgagaagctgtg 93690
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>ref|XM_450604.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1124

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 406 ggtgatggtgttctcgttgctcgagaagctgtg 438
           ||||| || ||||||||||||||||||||||||
Sbjct: 725 ggtgagggagttctcgttgctcgagaagctgtg 693
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>gb|BT012680.1| Lycopersicon esculentum clone 113526R, mRNA sequence
          Length = 1095

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 43/49 (87%)
 Strand = Plus / Minus

                                                            
Query: 391 gtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtga 439
           |||||| || |||||||||||| ||||||| ||| | ||||||||||||
Sbjct: 706 gtgctgagtacccacggtgatgatgttctcattggtagagaagctgtga 658
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                                 
Query: 406      ggtgatggtgttctcgttgctcgagaagctgtg 438
                ||||| || ||||||||||||||||||||||||
Sbjct: 11754767 ggtgagggagttctcgttgctcgagaagctgtg 11754735
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>dbj|AP005508.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0711F01
          Length = 193091

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                               
Query: 406    ggtgatggtgttctcgttgctcgagaagctgtg 438
              ||||| || ||||||||||||||||||||||||
Sbjct: 189401 ggtgagggagttctcgttgctcgagaagctgtg 189369
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>emb|Y18104.1|OSA18104 Oryza sativa mRNA for voltage-dependent anion channel
          Length = 1093

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 406 ggtgatggtgttctcgttgctcgagaagctgtg 438
           ||||| || ||||||||||||||||||||||||
Sbjct: 662 ggtgagggagttctcgttgctcgagaagctgtg 630
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>dbj|AK072129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013126C04, full
            insert sequence
          Length = 3071

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                             
Query: 406  ggtgatggtgttctcgttgctcgagaagctgtg 438
            ||||| || ||||||||||||||||||||||||
Sbjct: 2672 ggtgagggagttctcgttgctcgagaagctgtg 2640
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>dbj|AK061261.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-C01, full
           insert sequence
          Length = 1125

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 406 ggtgatggtgttctcgttgctcgagaagctgtg 438
           ||||| || ||||||||||||||||||||||||
Sbjct: 725 ggtgagggagttctcgttgctcgagaagctgtg 693
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>dbj|AK060652.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-027-H05, full
           insert sequence
          Length = 1242

 Score = 50.1 bits (25), Expect = 0.006
 Identities = 31/33 (93%)
 Strand = Plus / Minus

                                            
Query: 406 ggtgatggtgttctcgttgctcgagaagctgtg 438
           ||||| || ||||||||||||||||||||||||
Sbjct: 739 ggtgagggagttctcgttgctcgagaagctgtg 707
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>gb|AY316737.1| Lotus corniculatus var. japonicus VDAC1.1 mRNA, complete cds
          Length = 1203

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                      
Query: 313 ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttg 355
           |||| ||||||||||||| ||||||||  |||| |||||||||
Sbjct: 814 ccactcgtgctggatgagagcacttgccttgccgaagttgttg 772
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>emb|X74799.1|PAAS4EF P.anserina AS4 gene for translation elongation factor EF-1-alpha
          Length = 2157

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 244  gaacttggggctcttctcaacggcctt 270
            |||||||||||||| ||||||||||||
Sbjct: 1898 gaacttggggctctcctcaacggcctt 1872
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>dbj|AP006116.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT40C04, TM0199,
              complete sequence
          Length = 123325

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 38/43 (88%)
 Strand = Plus / Plus

                                                         
Query: 313    ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttg 355
              |||| ||||||||||||| ||||||||  |||| |||||||||
Sbjct: 119547 ccactcgtgctggatgagagcacttgccttgccgaagttgttg 119589
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>dbj|AP004901.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT13M13, TM0051b,
            complete sequence
          Length = 54022

 Score = 46.1 bits (23), Expect = 0.096
 Identities = 38/43 (88%)
 Strand = Plus / Minus

                                                       
Query: 313  ccacgcgtgctggatgagcgcacttgcgatgccaaagttgttg 355
            |||| ||||||||||||| ||||||||  |||| |||||||||
Sbjct: 8671 ccactcgtgctggatgagagcacttgccttgccgaagttgttg 8629
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>ref|XM_418162.1| PREDICTED: Gallus gallus similar to type I hair keratin KA31
           (LOC420039), mRNA
          Length = 2583

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 265 ggccttggtatcaacctcggtggag 289
           ||||||||||||| |||||||||||
Sbjct: 226 ggccttggtatcagcctcggtggag 250
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>gb|BT014102.1| Lycopersicon esculentum clone 133206R, mRNA sequence
          Length = 1133

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 392 tgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtgag 440
           ||||| ||||| | |||||  |||||||| ||||| |||||||||||||
Sbjct: 731 tgctgtgtcccaatggtgagtgtgttctcattgcttgagaagctgtgag 683
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>emb|X80387.1|STPORIN2 S.tuberosum pPOM36II mRNA for 36kDa porinII
          Length = 1060

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 392 tgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtgag 440
           ||||| ||||| | |||||  |||||||| ||||| |||||||||||||
Sbjct: 699 tgctgtgtcccaatggtgagtgtgttctcattgcttgagaagctgtgag 651
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>emb|X80386.1|STPORIN1 S.tuberosum pPOM34 mRNA for mitochondrial 34kDa porin
          Length = 1210

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 42/49 (85%)
 Strand = Plus / Minus

                                                            
Query: 391 gtgctgcgtccccacggtgatggtgttctcgttgctcgagaagctgtga 439
           |||||| || |||||||| ||| ||||||| ||| | ||||||||||||
Sbjct: 707 gtgctgagtacccacggtaatgatgttctcattggtggagaagctgtga 659
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>emb|X77733.1|TAVDAC1 T.aestivum VDAC 1 mRNA
          Length = 1159

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 414 tgttctcgttgctcgagaagctgtg 438
           ||||||||||||| |||||||||||
Sbjct: 682 tgttctcgttgcttgagaagctgtg 658
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>gb|AC183761.3| Pan troglodytes BAC clone CH251-710C5 from chromosome 7, complete
              sequence
          Length = 205916

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    aatgctagcatcctaatgca 201
              ||||||||||||||||||||
Sbjct: 191956 aatgctagcatcctaatgca 191975
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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 407    gtgatggtgttctcgttgctcgag 430
              |||||||||| |||||||||||||
Sbjct: 742998 gtgatggtgtcctcgttgctcgag 742975
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>gb|AY445665.1| Photorhabdus luminescens putative toxin transporter (mtpB) gene,
            partial cds; and putative toxin transporter (mtpD),
            putative toxin transporter (mtpE), and Mcf2 (mcf2) genes,
            complete cds
          Length = 13732

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 279  cctcggtggagaaggtgatgacag 302
            ||||| ||||||||||||||||||
Sbjct: 1468 cctcgctggagaaggtgatgacag 1491
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>gb|AC092637.2| Homo sapiens BAC clone RP11-358M3 from 7, complete sequence
          Length = 126643

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 182   aatgctagcatcctaatgca 201
             ||||||||||||||||||||
Sbjct: 88845 aatgctagcatcctaatgca 88826
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>emb|AJ616216.2| Takifugu rubripes ifng gene for interferon gamma, exons 1-4
          Length = 3030

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 170  tgatggtaccaaaatgctagcatcctaa 197
            |||||||||||| |||||||||| ||||
Sbjct: 1679 tgatggtaccaacatgctagcatgctaa 1706
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>emb|X80388.1|STPORIN3 S.tuberosum pPOM36I mRNA for 36kDA porinI
          Length = 1030

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 413 gtgttctcgttgctcgagaagctgtgag 440
           |||||||| ||||| |||||||||||||
Sbjct: 638 gtgttctcattgcttgagaagctgtgag 611
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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 407    gtgatggtgttctcgttgctcgag 430
              |||||||||| |||||||||||||
Sbjct: 740272 gtgatggtgtcctcgttgctcgag 740249
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 315     acgcgtgctggatgagcgca 334
               ||||||||||||||||||||
Sbjct: 4144682 acgcgtgctggatgagcgca 4144701


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,875,613
Number of Sequences: 3902068
Number of extensions: 2875613
Number of successful extensions: 40300
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40185
Number of HSP's gapped (non-prelim): 109
length of query: 442
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 420
effective length of database: 17,147,199,772
effective search space: 7201823904240
effective search space used: 7201823904240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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