ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah63a01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HISZ_RALSO (Q8Y020) ATP phosphoribosyltransferase regulatory sub... 31 2.3
2FLO9_YEAST (P39712) Flocculation protein FLO9 precursor 29 8.9
3FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Floccul... 29 8.9

>HISZ_RALSO (Q8Y020) ATP phosphoribosyltransferase regulatory subunit|
          Length = 386

 Score = 30.8 bits (68), Expect = 2.3
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = -3

Query: 517 LDKLESVEFH-GGAAPKIELLQFRGWRYKANTVLFAGLPSLPSLKQVLLKGRYE 359
           LD L ++  H GGAA  I+L   RG+ Y +  +  A +  +P+   V   GRY+
Sbjct: 240 LDDLATLAAHAGGAAVNIDLADLRGYHYHSGVMFAAYVAGVPN--AVARGGRYD 291



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>FLO9_YEAST (P39712) Flocculation protein FLO9 precursor|
          Length = 1322

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 GRDGSPANKTVLAL*RQPRNCSSSIFGAAPPWNSTDSSLS 515
           G +G P ++TV+ + R P   +S+I     PWNST +S S
Sbjct: 299 GTNGVPTDETVIVI-RTPTT-ASTIITTTEPWNSTFTSTS 336



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>FLO1_YEAST (P32768) Flocculation protein FLO1 precursor (Flocculin-1)|
          Length = 1537

 Score = 28.9 bits (63), Expect = 8.9
 Identities = 16/40 (40%), Positives = 24/40 (60%)
 Frame = +3

Query: 396 GRDGSPANKTVLAL*RQPRNCSSSIFGAAPPWNSTDSSLS 515
           G +G P ++TV+ + R P   +S+I     PWNST +S S
Sbjct: 299 GTNGVPTDETVIVI-RTPTT-ASTIITTTEPWNSTFTSTS 336


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,763,498
Number of Sequences: 219361
Number of extensions: 1672128
Number of successful extensions: 4161
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4070
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4158
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3927707336
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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