Clone Name | rbah63a01 |
---|---|
Clone Library Name | barley_pub |
>emb|CR356222.24| Zebrafish DNA sequence from clone DKEY-103J14 in linkage group 13, complete sequence Length = 206656 Score = 48.1 bits (24), Expect = 0.029 Identities = 27/28 (96%) Strand = Plus / Plus Query: 254 tctttgaaacaggtagaagcagtctgaa 281 |||||||| ||||||||||||||||||| Sbjct: 18008 tctttgaagcaggtagaagcagtctgaa 18035
>gb|AC010016.6| Drosophila melanogaster 3L BAC RP98-10M10 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174616 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 175 agtatatatacaattttttcttgtggg 201 ||||||||||||||||||| ||||||| Sbjct: 5595 agtatatatacaatttttttttgtggg 5569
>gb|AC010558.4| Drosophila melanogaster 3L BAC RPCI98-1K9 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 170356 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 175 agtatatatacaattttttcttgtggg 201 ||||||||||||||||||| ||||||| Sbjct: 124079 agtatatatacaatttttttttgtggg 124053
>gb|AE003548.3| Drosophila melanogaster chromosome 3L, section 37 of 83 of the complete sequence Length = 244140 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 175 agtatatatacaattttttcttgtggg 201 ||||||||||||||||||| ||||||| Sbjct: 135364 agtatatatacaatttttttttgtggg 135338
>gb|AC100386.29| Mus musculus chromosome 10, clone RP23-132J19, complete sequence Length = 216928 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 291 ttgagcttcaaaacaggtctgt 312 |||||||||||||||||||||| Sbjct: 95361 ttgagcttcaaaacaggtctgt 95340
>gb|AC120885.3| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0042J05, complete sequence Length = 150295 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 agtatatatacaattttttct 195 ||||||||||||||||||||| Sbjct: 129530 agtatatatacaattttttct 129510
>emb|AL512590.2| Human DNA sequence from clone RP11-23J9 on chromosome 9 Contains the 3' end of the gene for KIAA1529 protein, the 5' end of a gene for tudor repeat associator with PCTAIRE 2 (PCTAIRE2BP), a pseudogene similar to part of ral guanine nucleotide dissociation stimulator (RALGDS) and two CpG islands, complete sequence Length = 165432 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 178 atatatacaattttttcttgt 198 ||||||||||||||||||||| Sbjct: 155861 atatatacaattttttcttgt 155881
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 agtatatatacaattttttct 195 ||||||||||||||||||||| Sbjct: 23113527 agtatatatacaattttttct 23113507
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 175 agtatatatacaattttttct 195 ||||||||||||||||||||| Sbjct: 23423437 agtatatatacaattttttct 23423417
>gb|DQ308441.1| Bangia maxima photosystem I P700 chlorophyll A apoprotein A1 (psaA) gene, partial cds; plastid Length = 1395 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 191 tttcttgtggggatacacca 210 |||||||||||||||||||| Sbjct: 517 tttcttgtggggatacacca 498
>emb|AL355342.12| Human DNA sequence from clone RP11-9C23 on chromosome 10 Contains the 5' end of a novel gene and a CpG island, complete sequence Length = 53773 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 tgaccaaatatgtgtgagtt 251 |||||||||||||||||||| Sbjct: 43523 tgaccaaatatgtgtgagtt 43504
>emb|AL627168.10| Zebrafish DNA sequence from clone RP71-1M12 in linkage group 24 Contains a gene for a novel trypsin inhibitor, a novel gene similar to human GDAP1 (ganglioside-induced differentiation-associated protein 1), a gene for a novel protein similar to vertebrate junctophilins and three CpG islands, complete sequence Length = 180922 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 104 acagatacattggctggagc 123 |||||||||||||||||||| Sbjct: 99828 acagatacattggctggagc 99847
>emb|CR751563.13| Zebrafish DNA sequence from clone CH211-203C10 in linkage group 13, complete sequence Length = 72720 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 22 agctctttttacagtaatct 41 |||||||||||||||||||| Sbjct: 67889 agctctttttacagtaatct 67908
>gb|AC008540.6| Homo sapiens chromosome 19 clone CTC-496P20, complete sequence Length = 224931 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 agtatatatacaattttttcttgt 198 |||||||||||||||||| ||||| Sbjct: 216153 agtatatatacaatttttacttgt 216176
>gb|AC027694.8| Homo sapiens chromosome 17, clone CTD1-2246P4, complete sequence Length = 102202 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tatatatacaattttttctt 196 |||||||||||||||||||| Sbjct: 60725 tatatatacaattttttctt 60706
>gb|AC182811.1| Gasterosteus aculeatus clone VMRC28-119K14, complete sequence Length = 130423 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 61 aacaaagaagcaaaaccttg 80 |||||||||||||||||||| Sbjct: 16574 aacaaagaagcaaaaccttg 16555
>gb|AC157870.3| Loxodonta africana clone VMRC15-210D1, complete sequence Length = 123158 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 174 tagtatatatacaatttttt 193 |||||||||||||||||||| Sbjct: 71917 tagtatatatacaatttttt 71936
>gb|AE015928.1| Bacteroides thetaiotaomicron VPI-5482, complete genome Length = 6260361 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ttctagtatatatacaattt 190 |||||||||||||||||||| Sbjct: 3316527 ttctagtatatatacaattt 3316508
>gb|U95739.1|HSU95739 Human chromosome 16p11.2-p12 BAC clone CIT987SK-224D6 complete sequence Length = 69015 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 175 agtatatatacaattttttcttgt 198 |||||||||||||||||| ||||| Sbjct: 31262 agtatatatacaatttttacttgt 31285
>gb|AY596297.1| Haloarcula marismortui ATCC 43049 chromosome I, complete sequence Length = 3131724 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 220 tgtatactaccatgaccaaa 239 |||||||||||||||||||| Sbjct: 925383 tgtatactaccatgaccaaa 925364
>gb|U17003.1|DTU17003 Dugesia tigrina DTPOU3 transcription factor (dtPOU3) gene, partial cds Length = 318 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 278 tgaagcaattcagttgagcttcaa 301 ||||||| |||||||||||||||| Sbjct: 57 tgaagcacttcagttgagcttcaa 80
>emb|AL670260.10| Mouse DNA sequence from clone RP23-1I17 on chromosome 4, complete sequence Length = 147052 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tatatatacaattttttctt 196 |||||||||||||||||||| Sbjct: 119380 tatatatacaattttttctt 119361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,787,705 Number of Sequences: 3902068 Number of extensions: 4787705 Number of successful extensions: 88101 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 22 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 87950 Number of HSP's gapped (non-prelim): 151 length of query: 519 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 496 effective length of database: 17,143,297,704 effective search space: 8503075661184 effective search space used: 8503075661184 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)