Clone Name | rbah62k23 |
---|---|
Clone Library Name | barley_pub |
>MAD14_ORYSA (Q7Y023) MADS-box transcription factor 14 (OsMADS14) (Protein| APETALA1-like B) (Protein AGAMOUS-like 10) (FDRMADS6) (RMADS211) Length = 246 Score = 89.4 bits (220), Expect = 7e-18 Identities = 50/91 (54%), Positives = 57/91 (62%), Gaps = 2/91 (2%) Frame = -2 Query: 598 KKERSLQEENKVLQKELVEKQKXXXXXXXXXXXX--XXXXXXSFMMRDAPPVADTSNHPA 425 +KE+SLQEENKVLQKELVEKQK SFMMR+A P + SN+PA Sbjct: 156 RKEKSLQEENKVLQKELVEKQKVQKQQVQWDQTQPQTSSSSSSFMMREALPTTNISNYPA 215 Query: 424 AAGERAEDVAVQPQVPLRTALPLWMVSHING 332 AAGER EDVA +R LP WM+SHING Sbjct: 216 AAGERIEDVAAGQPQHVRIGLPPWMLSHING 246
>MAD15_ORYSA (Q6Q9I2) MADS-box transcription factor 15 (OsMADS15) (Protein| APETALA1-like A) (FDRMADS3) (RMADS215) Length = 267 Score = 54.7 bits (130), Expect = 2e-07 Identities = 44/111 (39%), Positives = 49/111 (44%), Gaps = 23/111 (20%) Frame = -2 Query: 598 KKERSLQEENKVLQKELVEKQK--------------XXXXXXXXXXXXXXXXXXSFMMRD 461 KKERSLQEENK LQKELVE+QK S M+RD Sbjct: 156 KKERSLQEENKALQKELVERQKNVRGQQQVGQWDQTQVQAQAQAQPQAQTSSSSSSMLRD 215 Query: 460 APPVADTSN---HPAAAGER-----AEDVAVQPQVPLRT-ALPLWMVSHIN 335 + N P GER A VA Q QV LR LP WM+SH+N Sbjct: 216 QQALLPPQNICYPPVMMGERNDAAAAAAVAAQGQVQLRIGGLPPWMLSHLN 266
>AGL8_SOLCO (O22328) Agamous-like MADS-box protein AGL8 homolog| Length = 250 Score = 36.2 bits (82), Expect = 0.074 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 6/95 (6%) Frame = -2 Query: 598 KKERSLQEENKVLQKELVEKQKXXXXXXXXXXXXXXXXXXSFMMR---DAPPVADTSNHP 428 K++R+LQE+N L K++ E++K +F++ D+P + + S + Sbjct: 156 KQDRALQEQNNQLSKKVKEREKEVEQQNQWDQQNHEINSSTFVLPQQLDSPHLGEASQNT 215 Query: 427 AAA--GERAEDVAVQPQ-VPLRTALPLWMVSHING 332 GE + Q Q T +P WMV H+NG Sbjct: 216 NVVDNGEVEGGNSSQXQGAANNTVMPQWMVRHLNG 250
>AGL8_SOLTU (Q42429) Agamous-like MADS-box protein AGL8 homolog (POTM1-1)| Length = 250 Score = 33.5 bits (75), Expect = 0.48 Identities = 24/95 (25%), Positives = 43/95 (45%), Gaps = 6/95 (6%) Frame = -2 Query: 598 KKERSLQEENKVLQKELVEKQKXXXXXXXXXXXXXXXXXXSFMMR---DAPPVADTSNHP 428 K++R+LQE+N L K++ E++K +F++ D+P + + + Sbjct: 156 KQDRALQEQNNQLSKKVKEREKEVAQQNQWDQQNHEINSSTFVLPQQLDSPHLGEAYQNT 215 Query: 427 AAA--GERAEDVAVQPQ-VPLRTALPLWMVSHING 332 GE + Q Q T +P WM+ H+NG Sbjct: 216 NVVDNGEVEGGNSSQQQGAANNTVMPQWMLRHLNG 250
>MYC_DROME (Q9W4S7) Myc protein (dMyc1) (dMyc) (Diminutive protein)| Length = 717 Score = 30.8 bits (68), Expect = 3.1 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 12/62 (19%) Frame = +3 Query: 33 IHRNNTQEQRVSSKVENSSL-MLHINYMVDYSYSHL-----------SPGGKETEVDEVK 176 I NN ++K++N+S MLH+ ++ D+SY+ +P + E+D V Sbjct: 358 ITTNNNNSNNKNNKLKNNSNGMLHMMHITDHSYTRCNDMVDDGPNLETPSDSDEEIDVVS 417 Query: 177 YT 182 YT Sbjct: 418 YT 419
>PRGR_RABIT (P06186) Progesterone receptor (PR)| Length = 930 Score = 30.4 bits (67), Expect = 4.1 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = +1 Query: 505 EFDLAAPPGPSASPQVPSGELYSPPAVTSP 594 +F LAAPP PS P+VPS SP Sbjct: 415 DFQLAAPPPPSLPPRVPSSRPGEAAVAASP 444
>NACAM_MOUSE (P70670) Nascent polypeptide-associated complex alpha subunit,| muscle-specific form (Alpha-NAC, muscle-specific form) Length = 2187 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/46 (32%), Positives = 25/46 (54%) Frame = +1 Query: 457 EHPSS*RKKKKSWFEAEFDLAAPPGPSASPQVPSGELYSPPAVTSP 594 ++PSS +K K+ E PP P+ SP++PS + P ++P Sbjct: 1555 KNPSSHKKTSKTIELKEAPATLPPSPTKSPKIPSSK--KAPRTSAP 1598
>FCTA_STRAW (Q82M40) Probable formyl-coenzyme A transferase (EC 2.8.3.16)| (Formyl-CoA transferase) Length = 409 Score = 29.3 bits (64), Expect = 9.1 Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 6/48 (12%) Frame = +1 Query: 265 PGWPVQLVTR-TE*YAYM-----GWKPFSR*CGSPSTVEAPSGVGPEA 390 PGW V+ Y Y+ GWKP S G P + P PEA Sbjct: 245 PGWAVKCAPGGPNDYVYVIVQPVGWKPLSELIGRPELADDPEWATPEA 292
>AP1_ARATH (P35631) Floral homeotic protein APETALA1 (Agamous-like MADS-box| protein AGL7) Length = 256 Score = 29.3 bits (64), Expect = 9.1 Identities = 10/22 (45%), Positives = 19/22 (86%) Frame = -2 Query: 598 KKERSLQEENKVLQKELVEKQK 533 KKE+++QE+N +L K++ E++K Sbjct: 156 KKEKAIQEQNSMLSKQIKEREK 177
>LOZEN_DROME (Q9W349) Protein lozenge| Length = 826 Score = 29.3 bits (64), Expect = 9.1 Identities = 15/33 (45%), Positives = 18/33 (54%) Frame = -2 Query: 454 PVADTSNHPAAAGERAEDVAVQPQVPLRTALPL 356 P A S H AAGE D+A Q + L+ LPL Sbjct: 23 PSASPSGHTGAAGESQLDLASQTESQLQLGLPL 55 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 86,201,675 Number of Sequences: 219361 Number of extensions: 1824491 Number of successful extensions: 5623 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 5165 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5609 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)