ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62k19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|AJ234439.1|HVU234439 Hordeum vulgare partial mRNA; clone cMW... 202 2e-49
2emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chr... 42 0.43
3dbj|AP001547.4| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 0.43
4gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, com... 40 1.7
5gb|AC148021.2| Mus musculus BAC clone RP23-9A7 from chromosome 1... 40 1.7
6gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome... 40 1.7
7gb|AC124517.4| Mus musculus BAC clone RP23-387K15 from chromosom... 40 1.7
8gb|AC160107.2| Mus musculus BAC clone RP24-252N17 from chromosom... 40 1.7
9gb|AC119863.9| Mus musculus chromosome 3, clone RP23-293A4, comp... 38 6.8
10gb|AC133425.3| Rattus norvegicus 7 BAC CH230-333I12 (Children's ... 38 6.8
11emb|AL355607.10| Human DNA sequence from clone RP11-367F23 on ch... 38 6.8
12gb|AC160391.2| Mus musculus BAC clone RP24-235G7 from chromosome... 38 6.8
13gb|AC021580.9| Homo sapiens chromosome 9, clone RP11-1091N2, com... 38 6.8
14gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Canc... 38 6.8
15gb|AC099660.5| Homo sapiens 3 BAC RP11-3A3 (Roswell Park Cancer ... 38 6.8
16emb|BX323053.6| Zebrafish DNA sequence from clone DKEYP-53E9 in ... 38 6.8
17gb|AC150407.2| Branchiostoma floridae clone CH302-54J24, complet... 38 6.8
18emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in ... 38 6.8
19gb|AC101932.9| Mus musculus chromosome 7, clone RP24-66E13, comp... 38 6.8
20dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:... 38 6.8 
>emb|AJ234439.1|HVU234439 Hordeum vulgare partial mRNA; clone cMWG0725
          Length = 383

 Score =  202 bits (102), Expect = 2e-49
 Identities = 128/138 (92%), Gaps = 1/138 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   aactttanatacagagagagtntaatactacgcctgctctgctgtgctctgccgngtgcc 60
           ||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 170 aactttacatacagagagagtataatactacgcctgctctgctgtgctctgccgtgtgcc 111

                                                                       
Query: 61  cagcancagacccangcagggnacactgtacgtgtgngttcttctcctcgcga-ccccct 119
           ||||| |||||||| |||||| |||||||||||||  |||||||||||||||| ||||||
Sbjct: 110 cagcagcagacccaagcagggcacactgtacgtgtttgttcttctcctcgcgacccccct 51

                             
Query: 120 tgnttttgtgcgtggaat 137
           || |||||||||||||||
Sbjct: 50  tgcttttgtgcgtggaat 33
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>emb|AL158086.32| Human DNA sequence from clone RP4-815O16 on chromosome 1p35.1-36.13
             Contains the C1QA gene for complement component 1( q
             subcomponent, alpha polypeptide), the C1QG gene for
             complement component 1 (q subcomponent, gamma
             polypeptide), the C1QB gene for complement component 1 (q
             subcomponent, beta polypeptide), the 5' end of the  EPHB2
             gene for EphB2 and a CpG island, complete sequence
          Length = 87320

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 32    gcctgctctgctgtgctctgc 52
             |||||||||||||||||||||
Sbjct: 53126 gcctgctctgctgtgctctgc 53106
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>dbj|AP001547.4| Homo sapiens genomic DNA, chromosome 11q clone:RP11-802F5, complete
              sequence
          Length = 144493

 Score = 42.1 bits (21), Expect = 0.43
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 32     gcctgctctgctgtgctctgc 52
              |||||||||||||||||||||
Sbjct: 115464 gcctgctctgctgtgctctgc 115484
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>gb|AC107685.7| Mus musculus chromosome 19, clone RP24-376I6, complete sequence
          Length = 175566

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   gcctgctctgctgtgctctg 51
            ||||||||||||||||||||
Sbjct: 7163 gcctgctctgctgtgctctg 7144
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>gb|AC148021.2| Mus musculus BAC clone RP23-9A7 from chromosome 19, complete sequence
          Length = 213178

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 32   gcctgctctgctgtgctctg 51
            ||||||||||||||||||||
Sbjct: 6242 gcctgctctgctgtgctctg 6261
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>gb|AC140378.2| Mus musculus BAC clone RP24-84M18 from chromosome 19, complete sequence
          Length = 194681

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    gcctgctctgctgtgctctg 51
             ||||||||||||||||||||
Sbjct: 74034 gcctgctctgctgtgctctg 74015
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>gb|AC124517.4| Mus musculus BAC clone RP23-387K15 from chromosome 13, complete
             sequence
          Length = 198825

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    cctgctctgctgtgctctgc 52
             ||||||||||||||||||||
Sbjct: 75886 cctgctctgctgtgctctgc 75905
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>gb|AC160107.2| Mus musculus BAC clone RP24-252N17 from chromosome 13, complete
            sequence
          Length = 178725

 Score = 40.1 bits (20), Expect = 1.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 33   cctgctctgctgtgctctgc 52
            ||||||||||||||||||||
Sbjct: 6551 cctgctctgctgtgctctgc 6532
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>gb|AC119863.9| Mus musculus chromosome 3, clone RP23-293A4, complete sequence
          Length = 179849

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 68105 ctgctctgctgtgctctgc 68087



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 68075 ctgctctgctgtgctctgc 68057



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 68040 ctgctctgctgtgctctgc 68022



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67985 ctgctctgctgtgctctgc 67967



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67945 ctgctctgctgtgctctgc 67927



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67880 ctgctctgctgtgctctgc 67862



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67865 ctgctctgctgtgctctgc 67847



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67815 ctgctctgctgtgctctgc 67797



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67800 ctgctctgctgtgctctgc 67782



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67780 ctgctctgctgtgctctgc 67762



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67735 ctgctctgctgtgctctgc 67717



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67715 ctgctctgctgtgctctgc 67697



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67675 ctgctctgctgtgctctgc 67657



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67520 ctgctctgctgtgctctgc 67502



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67470 ctgctctgctgtgctctgc 67452



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67400 ctgctctgctgtgctctgc 67382



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67385 ctgctctgctgtgctctgc 67367



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67370 ctgctctgctgtgctctgc 67352



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67320 ctgctctgctgtgctctgc 67302



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67300 ctgctctgctgtgctctgc 67282



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67280 ctgctctgctgtgctctgc 67262



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67255 ctgctctgctgtgctctgc 67237



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67235 ctgctctgctgtgctctgc 67217



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67195 ctgctctgctgtgctctgc 67177



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67155 ctgctctgctgtgctctgc 67137



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67135 ctgctctgctgtgctctgc 67117



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67105 ctgctctgctgtgctctgc 67087



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 67085 ctgctctgctgtgctctgc 67067



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 66980 ctgctctgctgtgctctgc 66962



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 66950 ctgctctgctgtgctctgc 66932



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 66935 ctgctctgctgtgctctgc 66917



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 66885 ctgctctgctgtgctctgc 66867



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 66805 ctgctctgctgtgctctgc 66787



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 66750 ctgctctgctgtgctctgc 66732
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>gb|AC133425.3| Rattus norvegicus 7 BAC CH230-333I12 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 64809

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 36    gctctgctgtgctctgccg 54
             |||||||||||||||||||
Sbjct: 12659 gctctgctgtgctctgccg 12677
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>emb|AL355607.10| Human DNA sequence from clone RP11-367F23 on chromosome 9 Contains a
             novel gene, complete sequence
          Length = 113308

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    cctgctctgctgtgctctg 51
             |||||||||||||||||||
Sbjct: 32940 cctgctctgctgtgctctg 32922
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>gb|AC160391.2| Mus musculus BAC clone RP24-235G7 from chromosome 12, complete sequence
          Length = 186582

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 60537 ctgctctgctgtgctctgc 60519



 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 60522 ctgctctgctgtgctctgc 60504
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>gb|AC021580.9| Homo sapiens chromosome 9, clone RP11-1091N2, complete sequence
          Length = 210557

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 33    cctgctctgctgtgctctg 51
             |||||||||||||||||||
Sbjct: 84714 cctgctctgctgtgctctg 84696
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>gb|AC067718.20| Homo sapiens 3 BAC RP11-198M8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97995

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 28479 ctgctctgctgtgctctgc 28461
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>gb|AC099660.5| Homo sapiens 3 BAC RP11-3A3 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 82144

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 12660 ctgctctgctgtgctctgc 12678
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>emb|BX323053.6| Zebrafish DNA sequence from clone DKEYP-53E9 in linkage group 12,
             complete sequence
          Length = 92153

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 88    gtacgtgtgngttcttctcctc 109
             ||||||||| ||||||||||||
Sbjct: 86095 gtacgtgtgtgttcttctcctc 86116
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>gb|AC150407.2| Branchiostoma floridae clone CH302-54J24, complete sequence
          Length = 175896

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 34    ctgctctgctgtgctctgc 52
             |||||||||||||||||||
Sbjct: 61364 ctgctctgctgtgctctgc 61346
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>emb|CR456684.10| Zebrafish DNA sequence from clone DKEY-46I8 in linkage group 12,
             complete sequence
          Length = 262809

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 88    gtacgtgtgngttcttctcctc 109
             ||||||||| ||||||||||||
Sbjct: 89809 gtacgtgtgtgttcttctcctc 89830
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>gb|AC101932.9| Mus musculus chromosome 7, clone RP24-66E13, complete sequence
          Length = 214419

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 34     ctgctctgctgtgctctgc 52
              |||||||||||||||||||
Sbjct: 108968 ctgctctgctgtgctctgc 108950
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>dbj|AP003123.2| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-402K1, complete
              sequence
          Length = 187735

 Score = 38.2 bits (19), Expect = 6.8
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 34     ctgctctgctgtgctctgc 52
              |||||||||||||||||||
Sbjct: 128035 ctgctctgctgtgctctgc 128053


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 430,792
Number of Sequences: 3902068
Number of extensions: 430792
Number of successful extensions: 23757
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23643
Number of HSP's gapped (non-prelim): 113
length of query: 142
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 121
effective length of database: 17,151,101,840
effective search space: 2075283322640
effective search space used: 2075283322640
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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