ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62k18 |
|---|---|
| Clone Library Name | barley_pub |
>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds Length = 1709 Score = 1249 bits (630), Expect = 0.0 Identities = 664/670 (99%), Gaps = 4/670 (0%) Strand = Plus / Minus Query: 4 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 63 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1684 tatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggacttag 1625 Query: 64 -gtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 122 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1624 tgtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccg 1565 Query: 123 t-cgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 181 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1564 ttcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccgg 1505 Query: 182 ca-cgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 240 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1504 catcgggcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgg 1445 Query: 241 gtgt-gtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 299 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1444 gtgttgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 1385 Query: 300 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1384 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 1325 Query: 360 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1324 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 1265 Query: 420 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 479 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1264 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 1205 Query: 480 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 539 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1204 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 1145 Query: 540 aaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactga 599 |||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || Sbjct: 1144 aaaagtcaatggattgtcctgggaaggtgtcgacgatctttacgacagactcgtcacaga 1085 Query: 600 cattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagccc 659 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1084 cattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagccc 1025 Query: 660 agtagaactt 669 |||||||||| Sbjct: 1024 agtagaactt 1015
>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase precursor RNA, partial cds; nuclear gene for chloroplast product Length = 850 Score = 1021 bits (515), Expect = 0.0 Identities = 628/663 (94%), Gaps = 7/663 (1%) Strand = Plus / Minus Query: 13 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 66 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 746 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 687 Query: 67 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 126 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 686 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 628 Query: 127 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 186 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 627 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 568 Query: 187 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 246 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 567 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 508 Query: 247 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 306 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 507 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 448 Query: 307 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 447 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 388 Query: 367 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 426 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 387 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 328 Query: 427 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 486 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 327 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 268 Query: 487 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 546 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 267 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 208 Query: 547 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 606 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 207 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 148 Query: 607 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 147 ggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaa 88 Query: 667 ctt 669 ||| Sbjct: 87 ctt 85
>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA Length = 1643 Score = 1021 bits (515), Expect = 0.0 Identities = 628/663 (94%), Gaps = 7/663 (1%) Strand = Plus / Minus Query: 13 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 66 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537 Query: 67 ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 126 | ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478 Query: 127 cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 186 | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || | Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418 Query: 187 gcaaagtaccttgctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgt 246 ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 1417 gcaaagtaccttgctgtgcccctttacctcctcctatgcagcaagagatggtgggtgtgt 1358 Query: 247 atggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacc 306 ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct: 1357 atggagaatgttctaaccgtagaaggtaccagtcttcatcgcatcctggttagcatcacc 1298 Query: 307 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1297 cagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctc 1238 Query: 367 ctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaa 426 |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| || Sbjct: 1237 ctggacgagcatgtgcccgtactctagcagcttctccactgtcatctttggctgctcaaa 1178 Query: 427 ggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtaga 486 |||||| || ||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 1177 ggtcactggtccgtcccgcgagttcaccagcttcttgccaatgttctcgataccggtaga 1118 Query: 487 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 546 | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1117 ggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 1058 Query: 547 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 606 |||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 1057 gatggattgtcctgggaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtc 998 Query: 607 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct: 997 ggtctggaagatacccttgcagacaccgatacggtcgtcgcgggtgggagcccagtagaa 938 Query: 667 ctt 669 ||| Sbjct: 937 ctt 935
>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end Length = 1394 Score = 793 bits (400), Expect = 0.0 Identities = 406/408 (99%) Strand = Plus / Minus Query: 262 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 321 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1167 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1108 Query: 322 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 381 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1107 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1048 Query: 382 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 441 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1047 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 988 Query: 442 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 501 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 987 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 928 Query: 502 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 561 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 927 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 868 Query: 562 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 621 |||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| Sbjct: 867 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 808 Query: 622 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 807 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 760 Score = 424 bits (214), Expect = e-115 Identities = 214/214 (100%) Strand = Plus / Minus Query: 1 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1378 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 1319 Query: 61 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1318 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 1259 Query: 121 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1258 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 1199 Query: 181 gcacgggcaaagtaccttgctgtgctcctttacc 214 |||||||||||||||||||||||||||||||||| Sbjct: 1198 gcacgggcaaagtaccttgctgtgctcctttacc 1165
>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1646 Score = 785 bits (396), Expect = 0.0 Identities = 589/650 (90%), Gaps = 9/650 (1%) Strand = Plus / Minus Query: 27 catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 80 ||||||||||| ||||||| ||||||||||| |||||||| || |||||||||| Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534 Query: 81 -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 139 || | |||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474 Query: 140 tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 199 ||||||| |||||||||||| ||||||| |||||||||||||| |||||||| ||||| Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414 Query: 200 ctgtgctcctttacctcctcctatgcagcaagagatggtgggtgtgtatggagaattttc 259 |||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||| Sbjct: 1413 ttgtgctcctttacctcctcctatgcagcaagagatggtgggtgt--atgaagagtgttc 1356 Query: 260 taaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctgg 319 |||||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||| Sbjct: 1355 taaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctgg 1296 Query: 320 ctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatg 379 |||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||| Sbjct: 1295 ctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatg 1236 Query: 380 tgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccg 439 || |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||| Sbjct: 1235 tggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccg 1176 Query: 440 tcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttg 499 |||||||||||||||||||||||||| |||||||| |||||||| || ||||||||| Sbjct: 1175 tcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttg 1116 Query: 500 cgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcct 559 ||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||||| Sbjct: 1115 cgcacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcct 1056 Query: 560 gggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagata 619 ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||| Sbjct: 1055 gggaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagata 996 Query: 620 cccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||| ||||||||||| || |||||||| |||||||||||||| Sbjct: 995 cccttgcagacgccgatacggtcctcgcgggtgggcgcccagtagaactt 946
>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase activase (RcaB) gene, complete cds; and ribulose 1,5-bisphosphate carboxylase activase (RcaA) gene, alternatively spliced, complete cds Length = 8766 Score = 664 bits (335), Expect = 0.0 Identities = 335/335 (100%) Strand = Plus / Minus Query: 212 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 271 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7355 acctcctcctatgcagcaagagatggtgggtgtgtatggagaattttctaaccgtagaag 7296 Query: 272 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 331 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7295 gaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtg 7236 Query: 332 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 391 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7235 tcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactct 7176 Query: 392 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 451 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7175 agcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttc 7116 Query: 452 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 511 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7115 accagcctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcg 7056 Query: 512 tcgtacacccgagcacgcagagcaccgaaaaagtc 546 ||||||||||||||||||||||||||||||||||| Sbjct: 7055 tcgtacacccgagcacgcagagcaccgaaaaagtc 7021 Score = 428 bits (216), Expect = e-116 Identities = 216/216 (100%) Strand = Plus / Minus Query: 1 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7738 atatatttagagatatattaacaaaacatgcccagcaatcgcttggatgcgatgcggact 7679 Query: 61 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7678 taggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgc 7619 Query: 121 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 7618 cgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccg 7559 Query: 181 gcacgggcaaagtaccttgctgtgctcctttacctc 216 |||||||||||||||||||||||||||||||||||| Sbjct: 7558 gcacgggcaaagtaccttgctgtgctcctttacctc 7523 Score = 246 bits (124), Expect = 8e-62 Identities = 124/124 (100%) Strand = Plus / Minus Query: 546 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 605 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821 Query: 606 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 665 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 6820 cggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtaga 6761 Query: 666 actt 669 |||| Sbjct: 6760 actt 6757 Score = 117 bits (59), Expect = 5e-23 Identities = 152/183 (83%) Strand = Plus / Minus Query: 487 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 546 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753 Query: 547 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 606 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 3752 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 3693 Query: 607 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 3692 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 3633 Query: 667 ctt 669 ||| Sbjct: 3632 ctt 3630 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 338 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 397 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902 Query: 398 ttctcgactgtcatctttggctgctcgaa 426 ||||| | |||||||| ||||| ||||| Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873
>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1616 Score = 555 bits (280), Expect = e-155 Identities = 376/408 (92%) Strand = Plus / Minus Query: 262 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 321 |||||||||||||||||||||||| ||||||| ||| ||||||||||||||||||||||| Sbjct: 1363 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1304 Query: 322 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 381 |||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1303 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1244 Query: 382 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 441 |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| ||||| Sbjct: 1243 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1184 Query: 442 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 501 |||||||||||||||||||||||| |||||||| |||||||| || ||||||||||| Sbjct: 1183 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1124 Query: 502 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 561 |||||| |||||||||||||||||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1123 cacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1064 Query: 562 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 621 ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct: 1063 gaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 1004 Query: 622 cttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||| ||||||||||| || |||||||| |||||||| ||||| Sbjct: 1003 cttgcagacgccgatacggtcctcgcgggtgggcgcccagtaaaactt 956 Score = 176 bits (89), Expect = 6e-41 Identities = 119/129 (92%) Strand = Plus / Minus Query: 86 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 145 |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430 Query: 146 gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 205 | |||||||||||| ||||||| |||||||||||||| |||||||| ||||| ||||| Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370 Query: 206 tcctttacc 214 ||||||||| Sbjct: 1369 tcctttacc 1361
>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco activase (rba1 gene) Length = 321 Score = 521 bits (263), Expect = e-145 Identities = 296/307 (96%) Strand = Plus / Minus Query: 240 ggtgtgtatggagaattttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 299 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 308 ggtgtgtatggagaatgttctaaccgtagaaggaaccagtcttcatcgcatcctggttag 249 Query: 300 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 359 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 catcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgacattgt 189 Query: 360 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 188 cctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctttggct 129 Query: 420 gctcgaaggtcacgggcccgtcccgcgagttcaccagcctcttgccaatgttctcgattc 479 |||| |||||||| || ||||||||||||||||| ||| ||||||||||||||||||| | Sbjct: 128 gctcaaaggtcactggtccgtcccgcgagttcacaagcttcttgccaatgttctcgatac 69 Query: 480 cggtagagccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccga 539 |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 68 cggtagaggtcacccacttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccga 9 Query: 540 aaaagtc 546 ||||||| Sbjct: 8 aaaagtc 2
>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase (rca) mRNA, complete cds Length = 1675 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 966 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 908 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1316 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1257 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1256 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1197 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1196 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1137 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 1136 ccctcgagttcaccagcctcttgccaatgttctc 1103
>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate carboxylase activase large isoform precursor protein, complete cds, clone: 13YPR038 Length = 1558 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 961 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 903 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggca 1336 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 263 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 322 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1309 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1250 Query: 323 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 382 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1249 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1190 Query: 383 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 442 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1189 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1130 Query: 443 cgcgagttcaccagcctcttgccaatgttctc 474 | |||||||||||||||||||||||||||||| Sbjct: 1129 ctcgagttcaccagcctcttgccaatgttctc 1098
>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA, partial cds; nuclear gene for chloroplast product Length = 651 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 215 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 157 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 565 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 506 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 505 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 446 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 445 atccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 386 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 385 ccctcgagttcaccagcctcttgccaatgttctc 352
>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full insert sequence Length = 1721 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 1009 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 951 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1359 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1300 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1299 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1240 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1239 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1180 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 1179 ccctcgagttcaccagcctcttgccaatgttctc 1146 Score = 119 bits (60), Expect = 1e-23 Identities = 114/130 (87%), Gaps = 4/130 (3%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||| Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504 Query: 155 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 211 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1444 Query: 212 acctcctcct 221 ||||||||| Sbjct: 1443 ccctcctcct 1434
>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full insert sequence Length = 1682 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 960 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 902 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455 Query: 155 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 211 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1395 Query: 212 acctcctcct 221 ||||||||| Sbjct: 1394 ccctcctcct 1385 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1310 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1251 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1250 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1191 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1190 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1131 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 1130 ccctcgagttcaccagcctcttgccaatgttctc 1097
>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full insert sequence Length = 1680 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 998 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 940 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493 Query: 155 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 211 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1433 Query: 212 acctcctcct 221 ||||||||| Sbjct: 1432 ccctcctcct 1423 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1348 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1289 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1288 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1229 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1228 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1169 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 1168 ccctcgagttcaccagcctcttgccaatgttctc 1135
>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full insert sequence Length = 1691 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 997 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 939 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492 Query: 155 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 211 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1432 Query: 212 acctcctcct 221 ||||||||| Sbjct: 1431 ccctcctcct 1422 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1347 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1288 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1287 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1228 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1227 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1168 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 1167 ccctcgagttcaccagcctcttgccaatgttctc 1134
>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full insert sequence Length = 1470 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 781 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 723 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276 Query: 155 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 211 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1216 Query: 212 acctcctcct 221 ||||||||| Sbjct: 1215 ccctcctcct 1206 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1131 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1072 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1071 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1012 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1011 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 952 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 951 ccctcgagttcaccagcctcttgccaatgttctc 918
>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform precursor, complete cds Length = 1706 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 1002 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 944 Score = 135 bits (68), Expect = 2e-28 Identities = 115/130 (88%), Gaps = 3/130 (2%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497 Query: 155 ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 211 |||| |||||||||||||||||||||| |||| ||| ||||||||||||||| Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1437 Query: 212 acctcctcct 221 ||||||||| Sbjct: 1436 ccctcctcct 1427 Score = 123 bits (62), Expect = 8e-25 Identities = 176/214 (82%) Strand = Plus / Minus Query: 261 aaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggc 320 ||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| || Sbjct: 1352 aaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgc 1293 Query: 321 tcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgt 380 ||| ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1292 tcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgt 1233 Query: 381 gcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgt 440 |||||||| | ||||| |||| |||||||| ||||||||||| | || || | Sbjct: 1232 atccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccct 1173 Query: 441 cccgcgagttcaccagcctcttgccaatgttctc 474 ||| |||||||||||||||||||||||||||||| Sbjct: 1172 ccctcgagttcaccagcctcttgccaatgttctc 1139
>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform precursor, complete cds Length = 1623 Score = 165 bits (83), Expect = 2e-37 Identities = 155/179 (86%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || ||| Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057 Query: 551 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 610 ||||| ||||||||| |||||||||||||||||| |||||| ||| |||||||| Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997 Query: 611 tggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||||| Sbjct: 996 cggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaactt 938 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggca 1371 Score = 119 bits (60), Expect = 1e-23 Identities = 174/212 (82%) Strand = Plus / Minus Query: 263 ccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctc 322 ||||||||||||||||||||||| || || |||||| ||||| ||||| |||| |||| Sbjct: 1344 ccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgctc 1285 Query: 323 atgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgc 382 | ||| ||||| ||||||||||||||||| || |||||||||| || ||||||| Sbjct: 1284 aagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgtat 1225 Query: 383 ccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcc 442 |||||||| | ||||| |||| |||||||| ||||||||||| | || || ||| Sbjct: 1224 ccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctcc 1165 Query: 443 cgcgagttcaccagcctcttgccaatgttctc 474 | |||||||||||||||||||||||||||||| Sbjct: 1164 ctcgagttcaccagcctcttgccaatgttctc 1133
>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB) mRNA, complete cds; nuclear gene for chloroplast product Length = 1525 Score = 159 bits (80), Expect = 1e-35 Identities = 269/332 (81%) Strand = Plus / Minus Query: 338 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 397 |||||||| ||||| || || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183 Query: 398 ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 457 ||||||| |||||||| ||||| ||||| ||| ||||| |||| ||||| || ||| Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123 Query: 458 ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 517 | |||| |||||||||| ||| | ||||||||||||||||||||| ||||||||| Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063 Query: 518 acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatc 577 ||||| || ||||| || ||||| ||||| ||||| || || ||||||||||| || | | Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtccaccagc 1003 Query: 578 ttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagacaccgata 637 | || || | |||||| ||| |||||||| ||||||| |||||||| || ||||| Sbjct: 1002 ctcaccacggcctcgtcggggacgttgtcggtgcggaagatgcccttgcacacgccgatg 943 Query: 638 cggtcgtcacgggtgggagcccagtagaactt 669 ||||| || |||||||| |||||||||||||| Sbjct: 942 cggtcctcccgggtgggcgcccagtagaactt 911
>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04 map S10003, complete sequence Length = 119238 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 258 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 317 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 108306 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 108365 Query: 318 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 377 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 108366 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 108425 Query: 378 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 437 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 108426 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 108485 Query: 438 cgtcccgcgagttcaccagcctcttgccaatgttctc 474 | |||| |||||||||||||||||||||||||||||| Sbjct: 108486 cctccctcgagttcaccagcctcttgccaatgttctc 108522 Score = 123 bits (62), Expect = 8e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 548 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 607 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747 Query: 608 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 667 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 108748 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 108807 Query: 668 tt 669 || Sbjct: 108808 tt 108809 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 113 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 172 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112 Query: 173 accttccggcacggg 187 || |||||||||| Sbjct: 112113 tcccgccggcacggg 112127 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 112456 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 112513 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 540 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 446 gagttcaccagcctcttgccaatgttctc 474 ||||||||||||||| |||| |||||||| Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352
>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0026K20 map S10559, complete sequence Length = 115996 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 258 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 317 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 30183 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 30242 Query: 318 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 377 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 30243 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 30302 Query: 378 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 437 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 30303 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 30362 Query: 438 cgtcccgcgagttcaccagcctcttgccaatgttctc 474 | |||| |||||||||||||||||||||||||||||| Sbjct: 30363 cctccctcgagttcaccagcctcttgccaatgttctc 30399 Score = 123 bits (62), Expect = 8e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 548 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 607 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624 Query: 608 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 667 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 30625 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 30684 Query: 668 tt 669 || Sbjct: 30685 tt 30686 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 113 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 172 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989 Query: 173 accttccggcacggg 187 || |||||||||| Sbjct: 33990 tcccgccggcacggg 34004 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 34333 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 34390 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 540 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 446 gagttcaccagcctcttgccaatgttctc 474 ||||||||||||||| |||| |||||||| Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 258 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 317 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28303445 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28303504 Query: 318 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 377 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28303505 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28303564 Query: 378 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 437 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28303565 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28303624 Query: 438 cgtcccgcgagttcaccagcctcttgccaatgttctc 474 | |||| |||||||||||||||||||||||||||||| Sbjct: 28303625 cctccctcgagttcaccagcctcttgccaatgttctc 28303661 Score = 123 bits (62), Expect = 8e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 548 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 607 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886 Query: 608 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 667 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28303887 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28303946 Query: 668 tt 669 || Sbjct: 28303947 tt 28303948 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 113 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 172 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251 Query: 173 accttccggcacggg 187 || |||||||||| Sbjct: 28307252 tcccgccggcacggg 28307266 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 28307595 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 28307652 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 540 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 446 gagttcaccagcctcttgccaatgttctc 474 ||||||||||||||| |||| |||||||| Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 133 bits (67), Expect = 8e-28 Identities = 88/95 (92%) Strand = Plus / Plus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 ||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844 Score = 129 bits (65), Expect = 1e-26 Identities = 179/217 (82%) Strand = Plus / Plus Query: 258 tctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcct 317 |||||||||||||||||||||||||||| || || |||||| ||||| ||||| |||| Sbjct: 28285894 tctaaccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcct 28285953 Query: 318 ggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagca 377 ||||| ||| ||||| ||||||||||||||||| || |||||||||| || |||| Sbjct: 28285954 cgctcaagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagca 28286013 Query: 378 tgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcc 437 ||| |||||||| | ||||| |||| |||||||| ||||||||||| | || | Sbjct: 28286014 tgtatccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggc 28286073 Query: 438 cgtcccgcgagttcaccagcctcttgccaatgttctc 474 | |||| |||||||||||||||||||||||||||||| Sbjct: 28286074 cctccctcgagttcaccagcctcttgccaatgttctc 28286110 Score = 123 bits (62), Expect = 8e-25 Identities = 107/122 (87%) Strand = Plus / Plus Query: 548 atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 607 |||||||| ||||||||| |||||||||||||||||| |||||| ||| |||||| Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335 Query: 608 gtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaac 667 || ||||||||||||||||||| |||| ||||||||| ||||||||||||||||||||| Sbjct: 28286336 gtgcggaagatacccttgcagacgccgacacggtcgtcgcgggtgggagcccagtagaac 28286395 Query: 668 tt 669 || Sbjct: 28286396 tt 28286397 Score = 54.0 bits (27), Expect = 6e-04 Identities = 63/75 (84%) Strand = Plus / Plus Query: 113 gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 172 ||||||||||||||||||||| || || ||||||||||| ||| |||||||||||| Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700 Query: 173 accttccggcacggg 187 || |||||||||| Sbjct: 28289701 tcccgccggcacggg 28289715 Score = 52.0 bits (26), Expect = 0.002 Identities = 50/58 (86%) Strand = Plus / Plus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| ||| |||| || || || ||||| || ||||||||||||||||||||||| Sbjct: 28290044 ggaagatgcccctgcacacgccaatgcggtcctcgcgggtgggagcccagtagaactt 28290101 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Plus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 540 ||||||||||||||||| |||||||| || || ||||| ||||| ||||| Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Plus Query: 446 gagttcaccagcctcttgccaatgttctc 474 ||||||||||||||| |||| |||||||| Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940
>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds Length = 1436 Score = 125 bits (63), Expect = 2e-25 Identities = 171/207 (82%) Strand = Plus / Minus Query: 259 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 318 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1007 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 948 Query: 319 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 378 ||||| ||| |||| || |||||||| | ||| || || ||||||||||| || ||||| Sbjct: 947 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcat 888 Query: 379 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 438 || |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 887 gttgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 828 Query: 439 gtcccgcgagttcaccagcctcttgcc 465 ||| |||||||||||||||||||||| Sbjct: 827 ctccagcgagttcaccagcctcttgcc 801 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 493 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 552 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714 Query: 553 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 612 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 654 Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||| ||||||| |||| ||||| || | ||||||||||||||||||||| Sbjct: 653 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaactt 597 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 105 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 164 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090 Query: 165 tcggtgcaaccttc 178 ||||| |||||||| Sbjct: 1089 tcggtacaaccttc 1076
>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small isoform precursor, mRNA, partial cds; nuclear gene for chloroplast product Length = 93 Score = 121 bits (61), Expect = 3e-24 Identities = 82/89 (92%) Strand = Plus / Minus Query: 101 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 160 ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| Sbjct: 93 aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34 Query: 161 ttggtcggtgcaaccttccggcacgggca 189 |||||||||||||||||||||| |||| Sbjct: 33 agggtcggtgcaaccttccggcacaggca 5
>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds Length = 1597 Score = 119 bits (60), Expect = 1e-23 Identities = 165/200 (82%) Strand = Plus / Minus Query: 266 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 325 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135 Query: 326 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 385 || |||| || |||||||| | ||| || || ||||||||||| || ||||||| ||| Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075 Query: 386 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 445 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015 Query: 446 gagttcaccagcctcttgcc 465 |||||||||||||||||||| Sbjct: 1014 gagttcaccagcctcttgcc 995 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 493 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 552 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908 Query: 553 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 612 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 848 Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||| ||||||| |||| ||||| || | ||||||||||||||||||||| Sbjct: 847 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaactt 791 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 105 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 164 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246 Query: 165 tcggtgcaaccttc 178 ||||| |||||||| Sbjct: 1245 tcggtacaaccttc 1232
>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds Length = 1656 Score = 117 bits (59), Expect = 5e-23 Identities = 152/183 (83%) Strand = Plus / Minus Query: 487 gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 546 ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| ||||| Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184 Query: 547 aatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtc 606 ||||| || || ||||||||||| || | | | || || | |||||| ||| ||||| Sbjct: 1183 gatggactgccccgggaaggtgtccaccagcctcaccacggcctcgtccgggacgttgtc 1124 Query: 607 ggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||| ||||||| |||||||| || ||||| ||||| || |||||||| ||||||||||| Sbjct: 1123 ggtgcggaagatgcccttgcacacgccgatgcggtcctcgcgggtgggcgcccagtagaa 1064 Query: 667 ctt 669 ||| Sbjct: 1063 ctt 1061 Score = 81.8 bits (41), Expect = 3e-12 Identities = 77/89 (86%) Strand = Plus / Minus Query: 338 agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 397 ||||||||||||||||| || |||||||||||||| |||||||| |||||||| | ||| Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333 Query: 398 ttctcgactgtcatctttggctgctcgaa 426 ||||| | |||||||| ||||| ||||| Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304
>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds Length = 1674 Score = 103 bits (52), Expect = 7e-19 Identities = 166/204 (81%) Strand = Plus / Minus Query: 259 ctaaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctg 318 |||||| |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| Sbjct: 1308 ctaaccatagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctc 1249 Query: 319 gctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcat 378 ||||| ||| |||| || |||||||| | ||| || || ||||| ||||| || ||||| Sbjct: 1248 gctcaggtacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcat 1189 Query: 379 gtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggccc 438 | |||||||| |||||||| || | |||||||| |||||| |||| ||| ||||| Sbjct: 1188 attgccgtactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggccc 1129 Query: 439 gtcccgcgagttcaccagcctctt 462 ||| ||||||||||||||||||| Sbjct: 1128 ctccagcgagttcaccagcctctt 1105 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 493 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 552 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015 Query: 553 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 612 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 955 Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||| ||||||| |||| ||||| || | ||||||||||||||||||||| Sbjct: 954 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaactt 898 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 105 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 164 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391 Query: 165 tcggtgcaaccttc 178 ||||| |||||||| Sbjct: 1390 tcggtacaaccttc 1377
>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic sequence Length = 234 Score = 101 bits (51), Expect = 3e-18 Identities = 84/95 (88%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 |||||||||| | |||||||||||||||||||||||||| |||||||||||| ||||||| Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||| |||||||||||||| |||| Sbjct: 75 ggcaacagggtcgggtcaaccttccggcacaggca 41
>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds Length = 1494 Score = 97.6 bits (49), Expect = 5e-17 Identities = 160/197 (81%) Strand = Plus / Minus Query: 266 tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 325 |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| | Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105 Query: 326 taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 385 || |||| || |||||||| | ||| || || ||||| ||||| || ||||| | ||| Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045 Query: 386 tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 445 ||||| |||||||| || | |||||||| |||||| |||| ||| ||||| ||| || Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985 Query: 446 gagttcaccagcctctt 462 ||||||||||||||||| Sbjct: 984 gagttcaccagcctctt 968 Score = 89.7 bits (45), Expect = 1e-14 Identities = 144/177 (81%) Strand = Plus / Minus Query: 493 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 552 |||||| | |||||| |||||||| |||| || | ||| |||||||| ||||||||||| Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878 Query: 553 ttgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctg 612 ||| || |||||||||||||||| ||||| |||| ||| | ||| ||||||| | Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgacatcctccttggggacgttgtcggacct 818 Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||||| ||||||| |||| ||||| || | ||||||||||||||||||||| Sbjct: 817 gaagataccggtgcagacgccgacccggtcatccctggtgggagcccagtagaactt 761 Score = 67.9 bits (34), Expect = 4e-08 Identities = 64/74 (86%) Strand = Plus / Minus Query: 105 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 164 ||||| ||||||||||| ||||||||||| ||||| |||||| |||| ||||||| || Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216 Query: 165 tcggtgcaaccttc 178 ||||| |||||||| Sbjct: 1215 tcggtacaaccttc 1202
>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase precursor, mRNA, partial cds Length = 1336 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 267 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 326 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860 Query: 327 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 386 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800 Query: 387 actctagcagcttctcgactgtcatctttggctgctcgaa 426 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760 Score = 85.7 bits (43), Expect = 2e-13 Identities = 136/167 (81%) Strand = Plus / Minus Query: 503 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 562 ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || ||| Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624 Query: 563 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 622 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 623 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 564 Query: 623 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 563 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaactt 517
>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase precursor (rca1) mRNA, complete cds Length = 1424 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 267 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 326 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 327 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 386 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 387 actctagcagcttctcgactgtcatctttggctgctcgaa 426 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 77.8 bits (39), Expect = 4e-11 Identities = 135/167 (80%) Strand = Plus / Minus Query: 503 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 562 ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || ||| Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019 Query: 563 aaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagataccc 622 ||||||||||| | || |||||| ||| || ||| |||||| ||||||| ||| Sbjct: 1018 aaggtgtcgaccagctggacgacgtgctcctcgtcgacgccgtcggtgcggaagatgccc 959 Query: 623 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 958 ttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaactt 912
>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence Length = 1750 Score = 95.6 bits (48), Expect = 2e-16 Identities = 132/160 (82%) Strand = Plus / Minus Query: 267 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 326 ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | || Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255 Query: 327 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 386 | ||||||||||||||||||||||||| || ||||||||| || |||||||| |||| Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195 Query: 387 actctagcagcttctcgactgtcatctttggctgctcgaa 426 |||| | |||||||||| || ||||| ||||||||||| Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| ||||||||||| ||||| ||||| || |||||||| |||||||||||||| Sbjct: 969 ggaagatgcccttgcagacgccgatgcggtcctcgcgggtgggcgcccagtagaactt 912
>ref|NM_179989.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.2 mRNA, complete cds Length = 1815 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 1078
>ref|NM_179990.1| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.3 mRNA, complete cds Length = 1928 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1134 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 1078
>ref|NM_129531.2| Arabidopsis thaliana RCA (RUBISCO ACTIVASE) AT2G39730 (RCA) transcript variant AT2G39730.1 mRNA, complete cds Length = 1833 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 1107
>gb|BT000710.1| Arabidopsis thaliana clone RAFL09-90-K08 (R19890) unknown protein (At2g39730) mRNA, complete cds Length = 1697 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 989
>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds Length = 1809 Score = 89.7 bits (45), Expect = 1e-14 Identities = 114/137 (83%) Strand = Plus / Minus Query: 533 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgacgacagactcg 592 |||||||| || ||||| ||||| || |||||||||||||||| |||||| || || Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgacaacgtggtcc 1105 Query: 593 tcactgacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtg 652 ||| |||||||||||| ||||||||| || |||||||||||||| ||||||||| Sbjct: 1104 tcaggaacattgtcggtcctgaagataccggtggcaacaccgatacggtcctcacgggtg 1045 Query: 653 ggagcccagtagaactt 669 ||||||||||||||||| Sbjct: 1044 ggagcccagtagaactt 1028
>gb|BT000613.1| Arabidopsis thaliana Rubsico activase (At2g39730/T5I7.3) mRNA, complete cds Length = 1425 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 960 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 904
>gb|AC003000.3| Arabidopsis thaliana chromosome 2 clone T5I7 map CIC10A06, complete sequence Length = 92624 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Plus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 14154 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 14210
>gb|AY056108.1| Arabidopsis thaliana At2g39730/T5I7.3_ mRNA, complete cds Length = 1674 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 992
>gb|AY052703.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1693 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1037 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 981
>gb|AY052290.1| Arabidopsis thaliana At2g39730/T5I7.3 mRNA, complete cds Length = 1655 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1045 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 989
>gb|AF325049.2|AF325049 Arabidopsis thaliana At2g39730 (At2g39730/T5I7.3) mRNA, complete cds Length = 1674 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1048 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 992
>gb|AY088487.1| Arabidopsis thaliana clone 7114 mRNA, complete sequence Length = 1787 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 1163 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 1107
>gb|M86720.1|ATHRBCOALP Arabidopisis thaliana ribulose bisphosphate carboxylase/oxygenase activase (rca) gene, complete cds Length = 3974 Score = 89.7 bits (45), Expect = 1e-14 Identities = 54/57 (94%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||||||||||||||||||||||||| |||||||| || |||||||||||||| Sbjct: 3129 gaagatacccttgcagacaccgatacggtcttcacgggtcggggcccagtagaactt 3073
>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence Length = 619 Score = 81.8 bits (41), Expect = 3e-12 Identities = 131/161 (81%) Strand = Plus / Minus Query: 509 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 568 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559 Query: 569 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 628 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 558 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 499 Query: 629 acaccgatacggtcgtcacgggtgggagcccagtagaactt 669 || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 498 acgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 458
>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase Length = 2472 Score = 79.8 bits (40), Expect = 1e-11 Identities = 97/116 (83%) Strand = Plus / Minus Query: 284 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 343 |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59 Query: 344 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 399 || | ||| |||||||||||||||||||| ||||||| || |||||||||||||| Sbjct: 58 actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319
>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0638A12 Length = 140731 Score = 77.8 bits (39), Expect = 4e-11 Identities = 81/95 (85%) Strand = Plus / Minus Query: 95 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 154 |||||| ||||||||||||||| ||| ||||| |||| | ||||||||||| |||| || Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728 Query: 155 ggcattttggtcggtgcaaccttccggcacgggca 189 |||| |||||||||||||||||||||| |||| Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693
>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence Length = 627 Score = 73.8 bits (37), Expect = 7e-10 Identities = 130/161 (80%) Strand = Plus / Minus Query: 509 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 568 |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| | Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567 Query: 569 tcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcag 628 ||||||| || |||||| |||||| ||| |||||| ||||||| |||||||| Sbjct: 566 tcgacgagctggacgacgtgctcgtcggggacgccgtcggtgcggaagatgcccttgcac 507 Query: 629 acaccgatacggtcgtcacgggtgggagcccagtagaactt 669 || ||||| ||||| || |||||||| |||||||||||||| Sbjct: 506 acgccgatgcggtcctcccgggtgggcgcccagtagaactt 466
>gb|S45033.1| rubisco activase, ribulosebisphosphate carboxylase/oxygenase activase {alternatively spliced} [spinach, Genomic, 3691 nt] Length = 3691 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 626 cagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 2813 cagacaccaatacggtcctcacgggtgggagcccagtagaactt 2770
>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds Length = 1832 Score = 71.9 bits (36), Expect = 3e-09 Identities = 42/44 (95%) Strand = Plus / Minus Query: 626 cagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 |||||||| |||||||| |||||||||||||||||||||||||| Sbjct: 1185 cagacaccaatacggtcctcacgggtgggagcccagtagaactt 1142 Score = 44.1 bits (22), Expect = 0.59 Identities = 58/70 (82%) Strand = Plus / Minus Query: 506 tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 565 ||||||||||| || ||||| | || || ||||||||||| || |||||||| |||||| Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246 Query: 566 gtgtcgacga 575 | ||| |||| Sbjct: 1245 gcgtcaacga 1236
>gb|DQ430612.1| Sorghum bicolor voucher PI585454 locus S10003 genomic sequence Length = 637 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 476
>gb|DQ430611.1| Sorghum bicolor voucher PI267539 locus S10003 genomic sequence Length = 633 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 472
>gb|DQ430610.1| Sorghum bicolor voucher PI267408 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430609.1| Sorghum bicolor voucher PI221607 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430608.1| Sorghum bicolor voucher PI152702 locus S10003 genomic sequence Length = 639 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 478
>gb|DQ430607.1| Sorghum bicolor voucher NSL92371 locus S10003 genomic sequence Length = 633 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 472
>gb|DQ430606.1| Sorghum bicolor voucher NSL77217 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430605.1| Sorghum bicolor voucher NSL77034 locus S10003 genomic sequence Length = 633 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 529 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 472
>gb|DQ430603.1| Sorghum bicolor voucher NSL56003 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430602.1| Sorghum bicolor voucher NSL55243 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430601.1| Sorghum bicolor voucher NSL51365 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430600.1| Sorghum bicolor voucher NSL51030 locus S10003 genomic sequence Length = 637 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 533 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 476
>gb|DQ430599.1| Sorghum bicolor voucher NSL50875 locus S10003 genomic sequence Length = 635 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 531 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 474
>gb|DQ430598.1| Sorghum bicolor voucher BTx623 locus S10003 genomic sequence Length = 639 Score = 67.9 bits (34), Expect = 4e-08 Identities = 52/58 (89%) Strand = Plus / Minus Query: 612 ggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| |||||||| || ||||| |||||||| |||||||| |||||||||||||| Sbjct: 535 ggaagatgcccttgcacacgccgatgcggtcgtcgcgggtgggcgcccagtagaactt 478
>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 1 mRNA, complete cds Length = 1559 Score = 67.9 bits (34), Expect = 4e-08 Identities = 40/42 (95%) Strand = Plus / Minus Query: 529 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 570 ||||||||||||||||||||||||||| || ||||||||||| Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072
>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA, complete cds; nuclear gene for chloroplast product Length = 1694 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 599 acattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagcc 658 |||||||| ||| ||| ||||||||||||||||| |||||||| || | ||| |||||| Sbjct: 1043 acattgtcagtcctgaaaatacccttgcagacaccaatacggtcttccctggtaggagcc 984 Query: 659 cagtagaa 666 |||||||| Sbjct: 983 cagtagaa 976 Score = 44.1 bits (22), Expect = 0.59 Identities = 43/50 (86%) Strand = Plus / Minus Query: 287 gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 336 |||||||||||||||||||| || || |||| |||||||| ||||||| Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306
>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase (pTA1.1) Length = 1011 Score = 63.9 bits (32), Expect = 6e-07 Identities = 107/132 (81%) Strand = Plus / Minus Query: 502 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 561 ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| || Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403 Query: 562 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 621 |||||| ||||| ||||| || |||| || ||| || ||||||||| ||| ||||| Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343 Query: 622 cttgcagacacc 633 |||||| ||||| Sbjct: 342 cttgcaaacacc 331
>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence Length = 1519 Score = 60.0 bits (30), Expect = 1e-05 Identities = 48/54 (88%) Strand = Plus / Minus Query: 529 cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 582 |||||||||||| || ||||| |||||||| |||||| | |||||||||||||| Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073
>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds Length = 4500 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 509 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 568 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664 Query: 569 tc 570 || Sbjct: 2663 tc 2662
>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase activase mRNA, complete cds Length = 1693 Score = 60.0 bits (30), Expect = 1e-05 Identities = 54/62 (87%) Strand = Plus / Minus Query: 509 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 568 ||||||||||| || |||||||| || ||||| ||||||||||| || || ||||||||| Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974 Query: 569 tc 570 || Sbjct: 973 tc 972
>gb|AF173678.1|AF173678 Beta vulgaris clone RAC109UNI ribulose bisphosphate carboxylase activase (Rca) gene, partial sequence Length = 648 Score = 58.0 bits (29), Expect = 4e-05 Identities = 59/69 (85%) Strand = Plus / Minus Query: 598 gacattgtcggtctggaagatacccttgcagacaccgatacggtcgtcacgggtgggagc 657 ||||||||| ||| ||||||||| |||| ||||| |||||||| ||||| ||||| || Sbjct: 248 gacattgtcagtcctgaagataccagtgcaaacaccaatacggtcctcacgagtgggtgc 189 Query: 658 ccagtagaa 666 ||||||||| Sbjct: 188 ccagtagaa 180
>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase mRNA Length = 1853 Score = 56.0 bits (28), Expect = 2e-04 Identities = 106/132 (80%) Strand = Plus / Minus Query: 295 gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 354 |||||||||||| ||||| |||| ||||| ||| | ||||| | || || | ||| || Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304 Query: 355 attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 414 ||| || ||||| ||||| ||||||| |||||||| || ||||| |||| |||||||| Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244 Query: 415 tggctgctcgaa 426 ||||||||||| Sbjct: 1243 cggctgctcgaa 1232 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 624 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaactt 669 ||||||| || ||||| || || ||||||||||||||||||||||| Sbjct: 1034 tgcagactccaatacgatcttcgcgggtgggagcccagtagaactt 989 Score = 44.1 bits (22), Expect = 0.59 Identities = 64/78 (82%) Strand = Plus / Minus Query: 493 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 552 |||||| | ||| ||||||||||| |||| ||| | || ||||| || || ||||| || Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106 Query: 553 ttgtcctgggaaggtgtc 570 ||| |||||||||||||| Sbjct: 1105 ttggcctgggaaggtgtc 1088
>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase Length = 2031 Score = 52.0 bits (26), Expect = 0.002 Identities = 68/82 (82%) Strand = Plus / Minus Query: 492 cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 551 ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || | Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102 Query: 552 attgtcctgggaaggtgtcgac 573 | |||||||||||||||||||| Sbjct: 1101 actgtcctgggaaggtgtcgac 1080
>emb|Y10657.1|CLRCAGENE C.littorale rca gene Length = 2513 Score = 50.1 bits (25), Expect = 0.009 Identities = 40/45 (88%) Strand = Plus / Minus Query: 610 ctggaagatacccttgcagacaccgatacggtcgtcacgggtggg 654 ||||||||| ||| ||||||| ||||| ||||| ||||||||||| Sbjct: 1861 ctggaagattcccatgcagacgccgatgcggtcctcacgggtggg 1817 Score = 42.1 bits (21), Expect = 2.3 Identities = 27/29 (93%) Strand = Plus / Minus Query: 338 agctgcacacgcttgacattgtcctgctc 366 |||||||| ||||||||||| |||||||| Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105
>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase alpha 2 mRNA, complete cds Length = 1433 Score = 48.1 bits (24), Expect = 0.037 Identities = 54/64 (84%) Strand = Plus / Minus Query: 512 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 571 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885 Query: 572 acga 575 |||| Sbjct: 884 acga 881
>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA, complete cds; nuclear gene for chloroplast product Length = 1724 Score = 48.1 bits (24), Expect = 0.037 Identities = 39/44 (88%) Strand = Plus / Minus Query: 623 ttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||||||||||| |||||||| || | |||||| ||||||||||| Sbjct: 1019 ttgcagacaccaatacggtcctccctggtgggtgcccagtagaa 976 Score = 40.1 bits (20), Expect = 9.1 Identities = 68/84 (80%) Strand = Plus / Minus Query: 296 ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 355 ||||||||||| ||||| |||| | |||||| ||||||| | || || | |||||| Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287 Query: 356 ttgtcctgctcctggacgagcatg 379 || |||||||||||||| |||||| Sbjct: 1286 ttctcctgctcctggacaagcatg 1263
>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds Length = 1063 Score = 48.1 bits (24), Expect = 0.037 Identities = 75/92 (81%) Strand = Plus / Minus Query: 491 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 550 |||||||| | ||| ||||| |||||||| | ||| | || |||||||| || || ||| Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530 Query: 551 gattgtcctgggaaggtgtcgacgatcttgac 582 ||||| || ||||||||||| || |||||||| Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498
>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 mRNA, partial cds Length = 1462 Score = 48.1 bits (24), Expect = 0.037 Identities = 54/64 (84%) Strand = Plus / Minus Query: 512 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 571 ||||| |||||||| | || |||||||| || || |||||||| || |||||||||||| Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886 Query: 572 acga 575 |||| Sbjct: 885 acga 882 Score = 44.1 bits (22), Expect = 0.59 Identities = 37/42 (88%) Strand = Plus / Minus Query: 604 gtcggtctggaagatacccttgcagacaccgatacggtcgtc 645 ||||||| ||| ||||| ||||| ||||||||||||||||| Sbjct: 853 gtcggtcctgaaaatacctttgcaaacaccgatacggtcgtc 812
>gb|DQ124098.1| Coffea arabica clone MN-SSH2-F02 mRNA sequence Length = 253 Score = 46.1 bits (23), Expect = 0.15 Identities = 38/43 (88%) Strand = Plus / Minus Query: 624 tgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 |||||||||| ||||| ||||| ||||| || ||||||||||| Sbjct: 143 tgcagacaccaatacgatcgtcgcgggttggtgcccagtagaa 101
>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase (pJQ11) Length = 883 Score = 44.1 bits (22), Expect = 0.59 Identities = 43/50 (86%) Strand = Plus / Minus Query: 533 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 582 |||||||||||||| || |||||||| |||||| | || || |||||||| Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296
>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence Length = 119249 Score = 44.1 bits (22), Expect = 0.59 Identities = 22/22 (100%) Strand = Plus / Minus Query: 300 catcacccagagctgcctggct 321 |||||||||||||||||||||| Sbjct: 51275 catcacccagagctgcctggct 51254
>emb|X14212.1|ATRCA Arabidopsis thaliana mRNA for rubisco activase Length = 1652 Score = 44.1 bits (22), Expect = 0.59 Identities = 25/26 (96%) Strand = Plus / Minus Query: 626 cagacaccgatacggtcgtcacgggt 651 ||||||||||||||||| |||||||| Sbjct: 1016 cagacaccgatacggtcttcacgggt 991
>gb|AF052424.1|AF052424 Datisca glomerata rubisco activase precursor, gene, partial cds Length = 1216 Score = 44.1 bits (22), Expect = 0.59 Identities = 46/54 (85%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| Sbjct: 872 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaa 819
>gb|AF047352.1|AF047352 Datisca glomerata rubisco activase precursor, mRNA, complete cds Length = 1634 Score = 44.1 bits (22), Expect = 0.59 Identities = 46/54 (85%) Strand = Plus / Minus Query: 613 gaagatacccttgcagacaccgatacggtcgtcacgggtgggagcccagtagaa 666 ||||||||| |||||||||| || ||||| || | |||||| ||||||||||| Sbjct: 1045 gaagataccagtgcagacaccaattcggtcttctctggtgggcgcccagtagaa 992
>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence Length = 177245 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 2 tatatttagagatatattaac 22 ||||||||||||||||||||| Sbjct: 12315 tatatttagagatatattaac 12335
>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16 Length = 349142 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 560 gggaaggtgtcgacgatcttg 580 ||||||||||||||||||||| Sbjct: 3653 gggaaggtgtcgacgatcttg 3673
>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence Length = 98660 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 tatatttagagatatattaac 22 ||||||||||||||||||||| Sbjct: 66387 tatatttagagatatattaac 66367
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 aaacatcagatattaaaagtg 91 ||||||||||||||||||||| Sbjct: 3040440 aaacatcagatattaaaagtg 3040420
>gb|AC144525.3| Homo sapiens BAC clone CTC-833E13 from 2, complete sequence Length = 75381 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 222 atgcagcaagagatggtgggt 242 ||||||||||||||||||||| Sbjct: 63530 atgcagcaagagatggtgggt 63550
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 71 aaacatcagatattaaaagtg 91 ||||||||||||||||||||| Sbjct: 3040385 aaacatcagatattaaaagtg 3040365
>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 159711 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 71 aaacatcagatattaaaagtg 91 ||||||||||||||||||||| Sbjct: 114403 aaacatcagatattaaaagtg 114423
>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence Length = 153155 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 1 atatatttagagatatattaa 21 ||||||||||||||||||||| Sbjct: 67943 atatatttagagatatattaa 67963
>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence Length = 105452 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 tatatttagagatatattaac 22 ||||||||||||||||||||| Sbjct: 6217 tatatttagagatatattaac 6197
>gb|AC002511.1| Homo sapiens chromosome 19 clone PC28130, complete sequence Length = 98713 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 610 ctggaagatacccttgcagacacc 633 ||||| |||||||||||||||||| Sbjct: 67288 ctggatgatacccttgcagacacc 67265
>gb|AC003067.59| Mus musculus Chromosome 16 BAC Clone tbx3 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 262062 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cctttacctcctcctatgca 226 |||||||||||||||||||| Sbjct: 46359 cctttacctcctcctatgca 46378
>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel alpha subunit mRNA, partial cds Length = 3448 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 1542 catcgcccagagctgcctggctca 1565
>gb|AF414359.1|AF414356S4 Mus musculus thioredoxin reductase (Trxr2) gene, exons 12 through 18, and complete cds Length = 16432 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cctttacctcctcctatgca 226 |||||||||||||||||||| Sbjct: 1637 cctttacctcctcctatgca 1656
>gb|AC133488.30| Mus musculus strain C57BL/6J clone rp23-432e14, complete sequence Length = 202128 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cctttacctcctcctatgca 226 |||||||||||||||||||| Sbjct: 32945 cctttacctcctcctatgca 32964
>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA Length = 531 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 331 gtcagcaagctgcacacgct 350 |||||||||||||||||||| Sbjct: 242 gtcagcaagctgcacacgct 223
>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B Length = 1010 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ttgacgacagactcgtcact 597 |||||||||||||||||||| Sbjct: 289 ttgacgacagactcgtcact 308
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcagatattaaaagtggcat 95 |||||||||||||||||||| Sbjct: 141058 tcagatattaaaagtggcat 141077
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 76 tcagatattaaaagtggcat 95 |||||||||||||||||||| Sbjct: 142564 tcagatattaaaagtggcat 142583
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 tcagatattaaaagtggcat 95 |||||||||||||||||||| Sbjct: 95930 tcagatattaaaagtggcat 95911
>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA, complete cds Length = 3459 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence Length = 161308 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 350 ttgacattgtcctgctcctg 369 |||||||||||||||||||| Sbjct: 126438 ttgacattgtcctgctcctg 126419
>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel, subfamily M, alpha member 1 (KCNMA1), mRNA Length = 6183 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, section 128 of 469 of the complete genome Length = 11388 Score = 40.1 bits (20), Expect = 9.1 Identities = 26/28 (92%) Strand = Plus / Minus Query: 104 ggtgtaaaggcagctgccgtcgtcgctc 131 |||||| |||| |||||||||||||||| Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133
>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 Length = 504369 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 aaacatgcccagcaatcgcttgga 47 |||||||||||||||||| ||||| Sbjct: 41692 aaacatgcccagcaatcgattgga 41715
>gb|AC003066.18| Mus musculus Chromosome 16 BAC Clone tbx1 Syntenic To Homo sapiens 22q11.2 DGCR Region, complete sequence Length = 176974 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 cctttacctcctcctatgca 226 |||||||||||||||||||| Sbjct: 34662 cctttacctcctcctatgca 34681
>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds, alternatively spliced Length = 3430 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 1636 catcgcccagagctgcctggctca 1659
>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds, alternatively spliced Length = 4490 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 2003 catcgcccagagctgcctggctca 2026
>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds, alternatively spliced Length = 6183 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 1912 catcgcccagagctgcctggctca 1935
>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15, complete sequence Length = 134752 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 90 tggcatgcttaaaaggtgta 109 |||||||||||||||||||| Sbjct: 78235 tggcatgcttaaaaggtgta 78254
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 629 acaccgatacggtcgtcacg 648 |||||||||||||||||||| Sbjct: 3056308 acaccgatacggtcgtcacg 3056327
>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence Length = 125424 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 ttgacattgtcctgctcctg 369 |||||||||||||||||||| Sbjct: 106960 ttgacattgtcctgctcctg 106979
>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit (KCNMA1), mRNA Length = 3459 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 300 catcacccagagctgcctggctca 323 |||| ||||||||||||||||||| Sbjct: 1596 catcgcccagagctgcctggctca 1619
>ref|XM_222660.3| PREDICTED: Rattus norvegicus leiomodin 1 (smooth muscle) (predicted) (Lmod1_predicted), mRNA Length = 1920 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 196 cttgctgtgctcctttacctcctc 219 ||||||| |||||||||||||||| Sbjct: 648 cttgctgggctcctttacctcctc 625
>gb|AC133487.14| Mus musculus strain C57BL/6J clone rp23-285e22, complete sequence Length = 158595 Score = 40.1 bits (20), Expect = 9.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 cctttacctcctcctatgca 226 |||||||||||||||||||| Sbjct: 27755 cctttacctcctcctatgca 27736
>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete sequence Length = 230848 Score = 40.1 bits (20), Expect = 9.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 atcagatattaaaagtggcatgct 98 ||||||||||||||||| |||||| Sbjct: 127875 atcagatattaaaagtgccatgct 127852 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,536,460 Number of Sequences: 3902068 Number of extensions: 4536460 Number of successful extensions: 86078 Number of sequences better than 10.0: 122 Number of HSP's better than 10.0 without gapping: 121 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 85588 Number of HSP's gapped (non-prelim): 425 length of query: 669 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 646 effective length of database: 17,143,297,704 effective search space: 11074570316784 effective search space used: 11074570316784 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
