ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62k16 |
|---|---|
| Clone Library Name | barley_pub |
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 34.7 bits (78), Expect = 0.21 Identities = 14/49 (28%), Positives = 22/49 (44%) Frame = +3 Query: 450 HHDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQNGTAAH 596 H + S +HQ G+ + QQ +HQ QH + H+ Q+ H Sbjct: 157 HSEEESDSQHQHGHQHEQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGH 205
>CREA_BOTCI (O94130) DNA-binding protein creA (Carbon catabolite repressor)| Length = 435 Score = 32.0 bits (71), Expect = 1.4 Identities = 13/52 (25%), Positives = 24/52 (46%) Frame = +3 Query: 441 STVHHDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQNGTAAH 596 + H+ + HQ YS++ ++ H S Q ++M HSH+ + H Sbjct: 231 TATHYSQHTQPRHQPYYSHSSHNSRNHLPSLQAYAMTRAHSHEEDDHYAHRH 282
>GAP2_DROME (Q8T498) Probable Ras GTPase-activating protein| Length = 1556 Score = 30.8 bits (68), Expect = 3.1 Identities = 14/35 (40%), Positives = 18/35 (51%) Frame = +3 Query: 471 QEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSP 575 Q+ Q QQ Q+HQ+ QH + PH HQ P Sbjct: 835 QQQQQQQQQQQQQQQQHQQLQQHGHQQQPH-HQHP 868
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 30.4 bits (67), Expect = 4.0 Identities = 14/43 (32%), Positives = 18/43 (41%) Frame = +3 Query: 450 HHDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQ 578 H + Q H + + Q +Q H QH SPH SPQ Sbjct: 1050 HQQHQQQQLHSPLHHHHHQGHQSHHAQQQHHPQLSPHHLLSPQ 1092
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 30.4 bits (67), Expect = 4.0 Identities = 12/42 (28%), Positives = 17/42 (40%) Frame = +3 Query: 453 HDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQ 578 H + Q+ Q Q Q+ Q+ QH + H H PQ Sbjct: 189 HQHQHQQQQQQQQHQQQHHQQQQQQQQQHHQQQQHHQHSQPQ 230
>LEUNG_ARATH (Q9FUY2) Transcriptional corepressor LEUNIG| Length = 931 Score = 30.4 bits (67), Expect = 4.0 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 3/64 (4%) Frame = +3 Query: 393 QPLVLPKLSQLRWR*RSTVHHDYTSTQEHQAGYSYTQQTNQEHQE---SSQHWSMRSPHS 563 Q L+L + Q + + + HH Q+ Q QQ Q+HQ S Q +P Sbjct: 114 QQLLLQRAQQQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQPPSQQQQQQSTPQH 173 Query: 564 HQSP 575 Q P Sbjct: 174 QQQP 177
>SRY_MUSSI (Q62565) Sex-determining region Y protein (Testis-determining| factor) Length = 311 Score = 30.4 bits (67), Expect = 4.0 Identities = 13/42 (30%), Positives = 17/42 (40%) Frame = +3 Query: 453 HDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQ 578 HD+ Q+ Q + + QQ Q H Q H HQ Q Sbjct: 162 HDHHQQQQQQQFHDHHQQKQQFHDHQQQQQQFHDHHHHQQQQ 203
>UXUA_VIBVY (Q7MBZ9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 395 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +2 Query: 494 LHPADQPRT----PRIISTLEHALTTFSSVPSKWNSST 595 +HP D PR PRI+ST+E VPSK N T Sbjct: 232 VHPDDPPRPILGLPRIVSTIEDIDWLTEKVPSKMNGLT 269
>UXUA_VIBVU (Q8D562) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 395 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +2 Query: 494 LHPADQPRT----PRIISTLEHALTTFSSVPSKWNSST 595 +HP D PR PRI+ST+E VPSK N T Sbjct: 232 VHPDDPPRPILGLPRIVSTIEDIDWLTEKVPSKMNGLT 269
>UXUA_VIBPA (Q87FH9) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 395 Score = 30.4 bits (67), Expect = 4.0 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 4/38 (10%) Frame = +2 Query: 494 LHPADQPRT----PRIISTLEHALTTFSSVPSKWNSST 595 +HP D PR PRI+ST+E VPSK N T Sbjct: 232 VHPDDPPRPILGLPRIVSTIEDIDWLTEKVPSKMNGLT 269
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 30.0 bits (66), Expect = 5.3 Identities = 12/42 (28%), Positives = 18/42 (42%) Frame = +3 Query: 453 HDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQ 578 H + Q+HQ+ Q T Q+HQ+ Q + Q Q Sbjct: 779 HQHNLQQQHQSHSQLQQHTQQQHQQQQQQQQQQQQQQQQQQQ 820
>SHH_RAT (Q63673) Sonic hedgehog protein precursor (SHH) [Contains: Sonic| hedgehog protein N-product; Sonic hedgehog protein C-product] Length = 437 Score = 30.0 bits (66), Expect = 5.3 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = -2 Query: 251 VSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 150 V AG DWVY + KA ++ +KA S + S+GC Sbjct: 167 VEAGFDWVYYESKARIHCSVKAE-NSVAAKSDGC 199
>S39A6_MOUSE (Q8C145) Zinc transporter SLC39A6 precursor (Solute carrier family| 39 member 6) (Endoplamic reticulum membrane-linked protein) (Ermelin) Length = 765 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/63 (22%), Positives = 27/63 (42%) Frame = +3 Query: 384 KTFQPLVLPKLSQLRWR*RSTVHHDYTSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHS 563 K Q + + K+ ++ H D+ +H+ + ++ EH +H S HS Sbjct: 78 KLLQNIGIDKIKRVHIHHDHEHHADHEHHSDHEHHSDHEHHSDHEHHSDHEHHSDHEHHS 137 Query: 564 HQS 572 H+S Sbjct: 138 HRS 140
>ELF1_DROME (P13002) Protein grainyhead (Protein grainy-head) (DNA-binding| protein ELF-1) (Element I-binding activity) (Transcription factor NTF-1) Length = 1333 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +3 Query: 462 TSTQEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQNGTA 590 TS HQ QQ +Q+ Q+ QH + HS NG A Sbjct: 742 TSVHHHQQ-QQQQQQQHQQQQQQQQHHQQQQHHSQDGKSNGGA 783
>UXUA_PHOPR (Q6LG56) Mannonate dehydratase (EC 4.2.1.8) (D-mannonate hydrolase)| Length = 394 Score = 29.3 bits (64), Expect = 9.0 Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 4/38 (10%) Frame = +2 Query: 494 LHPADQPRT----PRIISTLEHALTTFSSVPSKWNSST 595 +HP D PR PRI+ST+E + VPS+ N T Sbjct: 232 VHPDDPPRPILGLPRIVSTIEDIDWLTAEVPSQMNGIT 269
>TWHH_BRARE (Q90419) Tiggy-winkle hedgehog protein precursor (TWHH) (Sonic| hedgehog B protein) (SHHB) [Contains: Tiggy-winkle hedgehog protein N-product; Tiggy-winkle hedgehog protein C-product] Length = 416 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -2 Query: 311 DVTTLHLEARECT*LSE*YTVSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 150 D+TT + + LS V AG DWVY + KA ++ +KA S + S GC Sbjct: 150 DITTSDRDKSKYGMLSR-LAVEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 201
>PDPK1_DROME (Q9W0V1) 3-phosphoinositide-dependent protein kinase 1 (EC| 2.7.11.1) (dPDK-1) (Serine/threonine-protein kinase 61C) (dSTPK61) Length = 836 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/37 (35%), Positives = 15/37 (40%) Frame = +3 Query: 471 QEHQAGYSYTQQTNQEHQESSQHWSMRSPHSHQSPQN 581 Q+HQ GY QQ Q Q+ Q Q QN Sbjct: 200 QQHQQGYQSQQQQQQPQQQQEQQQQQEQSQQQQQLQN 236
>SHH_BRARE (Q92008) Sonic hedgehog A protein precursor (SHHA) (VHH-1)| [Contains: Sonic hedgehog A protein N-product; Sonic hedgehog A protein C-product] Length = 418 Score = 29.3 bits (64), Expect = 9.0 Identities = 20/54 (37%), Positives = 28/54 (51%) Frame = -2 Query: 311 DVTTLHLEARECT*LSE*YTVSAGIDWVYTKRKASVNDQIKAGFFSFSYPSEGC 150 D+TT + + LS V AG DWVY + KA ++ +KA S + S GC Sbjct: 147 DITTSDRDKSKYGTLSR-LAVEAGFDWVYYESKAHIHCSVKAE-NSVAAKSGGC 198
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 29.3 bits (64), Expect = 9.0 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 1/45 (2%) Frame = +3 Query: 447 VHHDYTSTQEHQAGYSYTQQT-NQEHQESSQHWSMRSPHSHQSPQ 578 +H + EHQ Y Q + +H E+ QH H HQ Q Sbjct: 10 MHSPSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHHHQQQQ 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,528,309 Number of Sequences: 219361 Number of extensions: 1672947 Number of successful extensions: 4313 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3990 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4274 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5196311029 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
