Clone Information

BLAST Search Result

Clone Name	rbah62k13
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	YOU2_CAEEL (P30629) Hypothetical protein ZK637.2	59	6e-09
2	RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (...	33	0.37
3	YJD7_YEAST (P47056) Hypothetical 24.8 kDa protein in NSP1-TAD2 i...	33	0.49
4	RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70)	32	0.64
5	RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)	32	0.64
6	RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (...	32	0.64
7	RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (...	32	0.64
8	HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA	32	0.83
9	RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
10	RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
11	RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
12	RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
13	LRC48_HUMAN (Q9H069) Leucine-rich repeat-containing protein 48	32	1.1
14	RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
15	RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
16	RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
17	RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
18	RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
19	RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
20	RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
21	RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
22	RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
23	RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) ...	32	1.1
24	RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)	32	1.1
25	RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)	31	1.4
26	HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD	31	1.9
27	TIM10_YEAST (P87108) Mitochondrial import inner membrane translo...	31	1.9
28	TIM8B_HUMAN (Q9Y5J9) Mitochondrial import inner membrane translo...	30	3.2
29	TIM8B_BOVIN (Q3SZ93) Mitochondrial import inner membrane translo...	30	3.2
30	TIM8A_RAT (Q9WVA1) Mitochondrial import inner membrane transloca...	30	3.2
31	TIM8A_MOUSE (Q9WVA2) Mitochondrial import inner membrane translo...	30	3.2
32	TIM8A_HUMAN (O60220) Mitochondrial import inner membrane translo...	30	3.2
33	TIM8A_BOVIN (Q3ZBS8) Mitochondrial import inner membrane translo...	30	3.2
34	GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondri...	30	3.2
35	LRC48_MACFA (Q4R6X9) Leucine-rich repeat-containing protein 48	30	4.1
36	GTHB1_CORAU (P48250) Gonadotropin beta-1 subunit precursor (Gona...	30	4.1
37	HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)	30	4.1
38	TIM8B_RAT (P62078) Mitochondrial import inner membrane transloca...	30	4.1
39	TIM8B_MOUSE (P62077) Mitochondrial import inner membrane translo...	30	4.1
40	TIM8A_XENLA (Q66L32) Mitochondrial import inner membrane translo...	30	4.1
41	TIM8A_FUGRU (Q90YI5) Mitochondrial import inner membrane translo...	30	4.1
42	TIM8_CAEEL (Q9N408) Mitochondrial import inner membrane transloc...	29	5.4
43	GTHB1_ONCMA (P48252) Gonadotropin beta-1 subunit precursor (Gona...	29	5.4
44	GTHB1_ONCKE (P10257) Gonadotropin beta-1 subunit precursor (Gona...	29	5.4
45	HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD	29	7.1
46	HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD	29	7.1
47	TRF2_THEVO (Q978U3) Tricorn protease-interacting factor F2 (EC 3...	29	7.1
48	OSBL1_MOUSE (Q91XL9) Oxysterol-binding protein-related protein 1...	29	7.1
49	EPHA6_RAT (P54758) Ephrin type-A receptor 6 precursor (EC 2.7.10...	29	7.1
50	EPHA6_MOUSE (Q62413) Ephrin type-A receptor 6 precursor (EC 2.7....	29	7.1
51	EPHA6_HUMAN (Q9UF33) Ephrin type-A receptor 6 precursor (EC 2.7....	29	7.1
52	UVRC_CAUCR (Q9A4F3) UvrABC system protein C (Protein uvrC) (Exci...	28	9.2
53	VPI_MESMA (Q86RQ7) Venom peptide BmKAPi precursor (Putative anti...	28	9.2
54	CF188_MOUSE (Q8R100) Protein C6orf188 homolog	28	9.2

>YOU2_CAEEL (P30629) Hypothetical protein ZK637.2|
          Length = 143

 Score = 58.9 bits (141), Expect = 6e-09
 Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 8/102 (7%)
 Frame = -2

Query: 422 LQKAYFKCAHDCFDRRQS-QEGITNCVENCGVPALSANNVVETEMAKFQERLNRSLMVCQ 246
           +QK+ F+C+  C D +++ ++ + NCVE+C      A   +E E+   Q++L+R  M C 
Sbjct: 32  MQKSMFQCSARCCDNKKTTRDAVENCVESCNDGMKKAQGYLEKELGGLQDQLSRCAMTCY 91

Query: 245 DKF------EAAKLQKMKTDATNE-LESCVNRSIDDSIRVLP 141
           DK       +  K  + +  + NE L+SCV+   DD I+++P
Sbjct: 92  DKLVQQFGPDVNKYSESQKLSFNEKLDSCVSVCADDHIKLIP 133

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>RPOD_TREPA (O83506) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 611

 Score = 33.1 bits (74), Expect = 0.37
 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  L+   +KFE  K  K  T AT  +   + RSI D   +IRV  H++EQI
Sbjct: 407 NIGLIKAVEKFEYRKGYKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQI 458

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>YJD7_YEAST (P47056) Hypothetical 24.8 kDa protein in NSP1-TAD2 intergenic|
           region
          Length = 224

 Score = 32.7 bits (73), Expect = 0.49
 Identities = 17/48 (35%), Positives = 28/48 (58%)
 Frame = -2

Query: 314 NNVVETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNR 171
           NN  ETE  K  + LNR++ +   K+    ++K KT +T + ES +N+
Sbjct: 104 NNTFETETGKLTKGLNRAVNISPFKY----IKKFKTVSTKKFESLLNK 147

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>RPOD_RHOCA (P46400) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 674

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 111
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I   +
Sbjct: 470 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLV 525

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>RPOD_CAUCR (P52324) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 652

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 111
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I   +
Sbjct: 448 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 503

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>RPOD_RHIME (Q59753) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 684

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 111
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I   +
Sbjct: 480 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 535

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>RPOD_AGRT5 (P33452) RNA polymerase sigma factor rpoD (Sigma-A) (Major|
           vegetative sigma factor)
          Length = 684

 Score = 32.3 bits (72), Expect = 0.64
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAI 111
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I   +
Sbjct: 480 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKIV 535

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>HRDA_STRCO (P18182) RNA polymerase principal sigma factor hrdA|
          Length = 396

 Score = 32.0 bits (71), Expect = 0.83
 Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQIKSAINMK* 99
           N  L+   +KF+ A+  K  T AT  +   ++R++ D   +IRV  H+VE I   + ++ 
Sbjct: 193 NLGLIRAVEKFDYARGYKFSTYATWWIRQAMSRALADQARTIRVPVHVVELINRVVRVQR 252

Query: 98  RNQKLRNC 75
           R  + R C
Sbjct: 253 RMLQERGC 260

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>RPOD_XANCP (Q8P4H2) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 624

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 419 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 470

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>RPOD_SALTY (P0A2E3) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 411 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 462

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>RPOD_SALTI (P0A2E4) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 411 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 462

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>RPOD_PSEFL (P52326) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 615

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 411 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 462

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>LRC48_HUMAN (Q9H069) Leucine-rich repeat-containing protein 48|
          Length = 523

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 19/68 (27%), Positives = 37/68 (54%)
 Frame = -2

Query: 296 EMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQIKS 117
           ++AKF+E+   SL   +++ E   ++KM  + + +    ++   D  + +   LVEQ++ 
Sbjct: 323 KIAKFEEKHLSSLSAIREELELPNIEKMILECSAD----ISELFDALMTLEMQLVEQLEE 378

Query: 116 AINMK*RN 93
            INM  RN
Sbjct: 379 TINMFERN 386

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>RPOD_HAEIN (P43766) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 629

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 425 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 476

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>RPOD_XANAC (Q8PG33) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 625

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 420 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 471

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>RPOD_PSEAE (P26480) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 617

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 413 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 464

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>RPOD_ECOLI (P00579) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 613

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 409 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 460

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>RPOD_BUCAP (P32001) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 617

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 413 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 464

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>RPOD_BUCAI (P57163) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 612

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 408 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 459

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>RPOD_SHEVI (O24744) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 410 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 461

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>RPOD_PSEPU (P52327) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 614

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 410 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 461

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>RPOD_BUCBP (Q89B10) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 609

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 405 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 456

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>RPOD_SERMA (P43344) RNA polymerase sigma factor rpoD (Sigma-70) (Fragment)|
          Length = 215

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 11  NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 62

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>RPOD_NEIGO (P52325) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 642

 Score = 31.6 bits (70), Expect = 1.1
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  LM   DKFE  +  K  T AT  +   + RSI D   +IR+  H++E I
Sbjct: 433 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI 484

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>RPOD_BORBU (P52323) RNA polymerase sigma factor rpoD (Sigma-70)|
          Length = 631

 Score = 31.2 bits (69), Expect = 1.4
 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  L+   +KFE  +  K  T AT  +   + RSI D   +IRV  H++EQI
Sbjct: 425 NIGLIKAVEKFEYKRGFKFSTYATWWIRQAITRSISDQARTIRVPVHMIEQI 476

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>HRDD_STRGR (Q59914) RNA polymerase principal sigma factor hrdD|
          Length = 332

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  L+   +KF+ AK  K  T AT  +   + RSI D   +IR+  HLVE++
Sbjct: 130 NAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEEL 181

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>TIM10_YEAST (P87108) Mitochondrial import inner membrane translocase subunit|
           TIM10 (Mitochondrial intermembrane protein MRS11)
          Length = 93

 Score = 30.8 bits (68), Expect = 1.9
 Identities = 16/68 (23%), Positives = 28/68 (41%)
 Frame = -2

Query: 470 AAQKHLEGVQDHVNFTLQKAYFKCAHDCFDRRQSQEGITNCVENCGVPALSANNVVETEM 291
           AA+  L+ V D  N  +   Y KC +  +   +  +  ++C++ C       N  V   M
Sbjct: 21  AAEAELDLVTDMFNKLVNNCYKKCINTSYSEGELNKNESSCLDRCVAKYFETNVQVGENM 80

Query: 290 AKFQERLN 267
            K  +  N
Sbjct: 81  QKMGQSFN 88

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>TIM8B_HUMAN (Q9Y5J9) Mitochondrial import inner membrane translocase subunit|
           Tim8 B (Deafness dystonia protein 2) (DDP-like protein)
          Length = 83

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -2

Query: 302 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQI 123
           E + A+F  +++  + +C DK       ++ +   N L SCV+R ID ++ +     + +
Sbjct: 19  EQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIV 78

Query: 122 K 120
           +
Sbjct: 79  Q 79

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>TIM8B_BOVIN (Q3SZ93) Mitochondrial import inner membrane translocase subunit|
           Tim8 B
          Length = 83

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = -2

Query: 302 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQI 123
           E + A+F  +++  + +C DK       ++ +   N L SCV+R ID ++ +     + +
Sbjct: 19  EQQKAQFTAQVHHFMELCWDKCVEKPGNRLDSRTENCLSSCVDRFIDTTLAITSRFAQIV 78

Query: 122 K 120
           +
Sbjct: 79  Q 79

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>TIM8A_RAT (Q9WVA1) Mitochondrial import inner membrane translocase subunit|
           Tim8 A (Deafness dystonia protein 1 homolog)
          Length = 97

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 305 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 126
           VET+  +FQ+ +++   +C +K       K+ + A     +CV R ID S  +L  L + 
Sbjct: 25  VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84

Query: 125 IKS 117
            KS
Sbjct: 85  QKS 87

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>TIM8A_MOUSE (Q9WVA2) Mitochondrial import inner membrane translocase subunit|
           Tim8 A (Deafness dystonia protein 1 homolog)
          Length = 97

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 305 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 126
           VET+  +FQ+ +++   +C +K       K+ + A     +CV R ID S  +L  L + 
Sbjct: 25  VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84

Query: 125 IKS 117
            KS
Sbjct: 85  QKS 87

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>TIM8A_HUMAN (O60220) Mitochondrial import inner membrane translocase subunit|
           Tim8 A (Deafness dystonia protein 1) (X-linked deafness
           dystonia protein)
          Length = 97

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 305 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 126
           VET+  +FQ+ +++   +C +K       K+ + A     +CV R ID S  +L  L + 
Sbjct: 25  VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84

Query: 125 IKS 117
            KS
Sbjct: 85  QKS 87

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>TIM8A_BOVIN (Q3ZBS8) Mitochondrial import inner membrane translocase subunit|
           Tim8 A
          Length = 97

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 19/63 (30%), Positives = 32/63 (50%)
 Frame = -2

Query: 305 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQ 126
           VET+  +FQ+ +++   +C +K       K+ + A     +CV R ID S  +L  L + 
Sbjct: 25  VETQKQRFQQLVHQMTELCWEKCMDKPGPKLDSRAEACFVNCVERFIDTSQFILNRLEQT 84

Query: 125 IKS 117
            KS
Sbjct: 85  QKS 87

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>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 517

 Score = 30.0 bits (66), Expect = 3.2
 Identities = 21/70 (30%), Positives = 36/70 (51%)
 Frame = -2

Query: 335 GVPALSANNVVETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDS 156
           G PAL++   VE + AK  E  ++++ +       A+  K+K D  + +ES  + +I   
Sbjct: 432 GTPALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLK-DFVSAMES--SSTIQSE 488

Query: 155 IRVLPHLVEQ 126
           I  L H VE+
Sbjct: 489 IAKLRHEVEE 498

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>LRC48_MACFA (Q4R6X9) Leucine-rich repeat-containing protein 48|
          Length = 523

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 18/68 (26%), Positives = 37/68 (54%)
 Frame = -2

Query: 296 EMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQIKS 117
           ++A+F+E+   SL   +++ E   ++KM  + + ++    N    + + +   LVEQ++ 
Sbjct: 323 KIAQFEEKHLSSLSAIREESELPNIEKMILECSADVSELFN----ELMMLEMQLVEQLEE 378

Query: 116 AINMK*RN 93
            INM  RN
Sbjct: 379 TINMFERN 386

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>GTHB1_CORAU (P48250) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I|
           chain) (GTH-I-beta)
          Length = 137

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 221 GALLLQTCLGRPSTSDSTFPGTWPSQSQQHCWQKE 325
           G++ + TC G   T+D  +  TW  +SQ  C  KE
Sbjct: 48  GSITITTCAGLCETTDLNYQSTWLPRSQGACNFKE 82

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>HISX_CAMJE (Q9PM77) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 428

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 22/87 (25%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
 Frame = -2

Query: 395 HDCFDRRQSQEGITNCVENCGVPALSANN----VVETEMAKFQERLNRSLMVCQDKFEAA 228
           +D  D +Q +E +         PA+SA +    +V + + + QE+ +++L+    KF+ A
Sbjct: 6   YDNLDEKQKEEALKR-------PAISAKDEISKIVSSIIKEVQEKGDKALIEQALKFDKA 58

Query: 227 KLQKMK------TDATNELESCVNRSI 165
           ++ K+K      T A+N L+  +  +I
Sbjct: 59  EISKIKITQEEITQASNRLDKDLQEAI 85

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>TIM8B_RAT (P62078) Mitochondrial import inner membrane translocase subunit|
           Tim8 B (Deafness dystonia protein 2 homolog)
          Length = 83

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 302 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 147
           E + A+F  +++  + +C DK       ++ +   N L SCV+R ID ++ +
Sbjct: 19  EQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAI 70

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>TIM8B_MOUSE (P62077) Mitochondrial import inner membrane translocase subunit|
           Tim8 B (Deafness dystonia protein 2 homolog)
          Length = 83

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -2

Query: 302 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 147
           E + A+F  +++  + +C DK       ++ +   N L SCV+R ID ++ +
Sbjct: 19  EQQKAQFTAQVHHFMELCWDKCVEKPGSRLDSRTENCLSSCVDRFIDTTLAI 70

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>TIM8A_XENLA (Q66L32) Mitochondrial import inner membrane translocase subunit|
           Tim8 A
          Length = 94

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -2

Query: 305 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 147
           VE + A+F  +++  + VC DK       K+ +   + L SCV+R ID ++ +
Sbjct: 29  VEQQKAQFTAQVHNFMDVCWDKCIDRPGNKLDSRTESCLVSCVDRFIDTTLSI 81

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>TIM8A_FUGRU (Q90YI5) Mitochondrial import inner membrane translocase subunit|
           Tim8 A
          Length = 90

 Score = 29.6 bits (65), Expect = 4.1
 Identities = 20/71 (28%), Positives = 33/71 (46%)
 Frame = -2

Query: 329 PALSANNVVETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIR 150
           P L     +E++  +FQ+ ++    VC DK       K+ + A     +CV R ID S  
Sbjct: 10  PQLQQFIEIESQKQRFQQLVHHMTEVCWDKCMDKPGPKLDSRAEMCFVNCVERFIDTSQF 69

Query: 149 VLPHLVEQIKS 117
           +L  L +  +S
Sbjct: 70  ILNRLEQTQRS 80

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>TIM8_CAEEL (Q9N408) Mitochondrial import inner membrane translocase subunit|
           tim-8
          Length = 83

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
 Frame = -2

Query: 302 ETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNE--LESCVNRSIDDSIRVLPHL 135
           ET+  KF E+++     C D   A      K D   +  +++CVNR ID S  ++ HL
Sbjct: 18  ETQRQKFTEQVHTLTGRCWDVCFADYRPPSKMDGKTQTCIQNCVNRMIDASNFMVEHL 75

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>GTHB1_ONCMA (P48252) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I|
           chain) (GTH-I-beta)
          Length = 137

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 221 GALLLQTCLGRPSTSDSTFPGTWPSQSQQHCWQKE 325
           G++ + TC G   T+D  +  TW  +SQ  C  KE
Sbjct: 48  GSITITTCAGLCETTDLNYQSTWLPRSQGVCNFKE 82

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>GTHB1_ONCKE (P10257) Gonadotropin beta-1 subunit precursor (Gonadotropin beta-I|
           chain) (GTH-I-beta)
          Length = 137

 Score = 29.3 bits (64), Expect = 5.4
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = +2

Query: 221 GALLLQTCLGRPSTSDSTFPGTWPSQSQQHCWQKE 325
           G++ + TC G   T+D  +  TW  +SQ  C  KE
Sbjct: 48  GSITITTCAGLCETTDLNYQSTWLPRSQGVCNFKE 82

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>HRDD_STRVF (Q60012) RNA polymerase principal sigma factor hrdD|
          Length = 332

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  L+   +KF+  K  K  T AT  +   + RSI D   +IR+  HLVE++
Sbjct: 130 NAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEEL 181

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>HRDD_STRCO (P18249) RNA polymerase principal sigma factor hrdD|
          Length = 332

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
 Frame = -2

Query: 269 NRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDD---SIRVLPHLVEQI 123
           N  L+   +KF+  K  K  T AT  +   + RSI D   +IR+  HLVE++
Sbjct: 130 NAGLVRAVEKFDYRKGFKFSTYATWWIRQAITRSIADQSRTIRLPVHLVEEL 181

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>TRF2_THEVO (Q978U3) Tricorn protease-interacting factor F2 (EC 3.4.11.-)|
          Length = 783

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -2

Query: 305 VETEMAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRV 147
           V+ + AK       SL    D   A  + K +TD  NEL    N+  DD IRV
Sbjct: 610 VDEDFAKELSPQFASLSEDPDLALAKAVAKARTDGLNELIDAANKYTDDEIRV 662

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>OSBL1_MOUSE (Q91XL9) Oxysterol-binding protein-related protein 1 (OSBP-related|
           protein 1) (ORP-1)
          Length = 950

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 15/27 (55%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 385 KQSCAHLKYAFCRVKLTWSCTPS-RCF 462
           +Q C HL  A C VK T SC  S RCF
Sbjct: 278 RQGCKHLTQAVCTVKPTDSCLFSIRCF 304

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>EPHA6_RAT (P54758) Ephrin type-A receptor 6 precursor (EC 2.7.10.1)|
            (Tyrosine-protein kinase receptor EHK-2) (EPH homology
            kinase 2)
          Length = 1035

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 296  QSQQHCWQKERAHHSSLHNW*FPLDSVAYQSSHVHT 403
            Q   HCWQKER H     +    LD +    S +HT
Sbjct: 906  QLMLHCWQKERNHRPKFTDIVSFLDKLIRNPSALHT 941

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>EPHA6_MOUSE (Q62413) Ephrin type-A receptor 6 precursor (EC 2.7.10.1)|
            (Tyrosine-protein kinase receptor EHK-2) (EPH homology
            kinase 2)
          Length = 1035

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 296  QSQQHCWQKERAHHSSLHNW*FPLDSVAYQSSHVHT 403
            Q   HCWQKER H     +    LD +    S +HT
Sbjct: 906  QLMLHCWQKERNHRPKFTDIVSFLDKLIRNPSALHT 941

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>EPHA6_HUMAN (Q9UF33) Ephrin type-A receptor 6 precursor (EC 2.7.10.1)|
            (Tyrosine-protein kinase receptor EHK-2) (EPH homology
            kinase 2)
          Length = 1035

 Score = 28.9 bits (63), Expect = 7.1
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +2

Query: 296  QSQQHCWQKERAHHSSLHNW*FPLDSVAYQSSHVHT 403
            Q   HCWQKER H     +    LD +    S +HT
Sbjct: 906  QLMLHCWQKERNHRPKFTDIVSFLDKLIRNPSALHT 941

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>UVRC_CAUCR (Q9A4F3) UvrABC system protein C (Protein uvrC) (Excinuclease ABC|
           subunit C)
          Length = 640

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 17/69 (24%), Positives = 34/69 (49%)
 Frame = -2

Query: 293 MAKFQERLNRSLMVCQDKFEAAKLQKMKTDATNELESCVNRSIDDSIRVLPHLVEQIKSA 114
           + K +    R +   Q +F   ++  M  DAT  +E    R+  D++ +  +L++Q+K  
Sbjct: 52  VGKAKSLKKRVVQYAQGRFHTNRIANM-VDATRAMEFITTRTEADALLLEINLIKQLKPR 110

Query: 113 INMK*RNQK 87
            N+  R+ K
Sbjct: 111 FNVLLRDDK 119

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>VPI_MESMA (Q86RQ7) Venom peptide BmKAPi precursor (Putative anticoagulant|
           peptide BmAP1)
          Length = 89

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 14/43 (32%), Positives = 22/43 (51%)
 Frame = -2

Query: 425 TLQKAYFKCAHDCFDRRQSQEGITNCVENCGVPALSANNVVET 297
           +L ++YF+C        +  E   NC+ NCG P  S  N++ T
Sbjct: 20  SLSQSYFRC--------RDNEVFDNCISNCGPPRCS--NILNT 52

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>CF188_MOUSE (Q8R100) Protein C6orf188 homolog|
          Length = 309

 Score = 28.5 bits (62), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 281 GTWPSQSQQHCWQKERAHHSSLH 349
           G W + S+ H + ++R H+S+LH
Sbjct: 260 GAWEAASELHSFHQDREHYSTLH 282


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,745,887
Number of Sequences: 219361
Number of extensions: 1269091
Number of successful extensions: 4213
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 4092
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4210
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3130907202
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result