ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62k12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC128597.3| Rattus norvegicus BAC CH230-62C6 (Children's Hos... 44 0.56
2gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 ma... 44 0.56
3gb|AC113469.9| Mus musculus chromosome 8, clone RP23-261B5, comp... 42 2.2
4gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome 42 2.2
5gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome 42 2.2
6gb|AE006578.1| Streptococcus pyogenes M1 GAS, section 107 of 167... 42 2.2
7gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome 42 2.2
8gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome 42 2.2
9gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome 42 2.2
10gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome 42 2.2
11ref|XM_848623.1| PREDICTED: Canis familiaris similar to FLJ44048... 42 2.2
12ref|XM_722521.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 42 2.2
13gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome 42 2.2
14gb|AC110871.6| Homo sapiens 3 BAC RP11-639B4 (Roswell Park Cance... 42 2.2
15gb|AC084217.7| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-32... 42 2.2
16gb|AE010061.1| Streptococcus pyogenes strain MGAS8232, section 1... 42 2.2
17gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Gen... 42 2.2
18gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequ... 42 2.2
19gb|AC007534.2|AC007534 Genomic sequence for Arabidopsis thaliana... 42 2.2
20gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome 42 2.2
21dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome 42 2.2
22emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in ... 42 2.2
23emb|BX510957.15| Zebrafish DNA sequence from clone DKEY-69C1 in ... 42 2.2
24gb|AC116747.10| Mus musculus chromosome 8, clone RP23-80O20, com... 42 2.2
25emb|AL772323.8| Mouse DNA sequence from clone RP23-370F9 on chro... 42 2.2
26emb|AL355177.14| Mouse DNA sequence from clone RP21-61H21 on chr... 42 2.2
27gb|AC129582.10| Mus musculus chromosome 5, clone RP24-485O24, co... 40 8.7
28gb|AC163210.4| Mus musculus chromosome 7, clone RP24-362L9, comp... 40 8.7
29gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, co... 40 8.7
30gb|AC150855.6| Bos taurus BAC CH240-472P12 (Children's Hospital... 40 8.7
31gb|AC104873.7| Mus musculus chromosome 1, clone RP23-434G18, com... 40 8.7
32gb|AE009178.1| Agrobacterium tumefaciens str. C58 circular chrom... 40 8.7
33gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosom... 40 8.7
34gb|AY355870.1| Canis familiaris isolate cOR5H12 olfactory recept... 40 8.7
35ref|XM_844911.1| PREDICTED: Canis familiaris similar to olfactor... 40 8.7
36ref|XM_545065.2| PREDICTED: Canis familiaris hypothetical gene s... 40 8.7
37gb|AC093819.4| Homo sapiens BAC clone RP11-368D18 from 4, comple... 40 8.7
38emb|AJ410870.2|SSC410870 Sus scrofa COX7A1 gene, CAPNS1 gene, C... 40 8.7
39gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome... 40 8.7
40emb|CR955034.5| Wallaby DNA sequence from clone GRWB-130P10, com... 40 8.7
41emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chr... 40 8.7
42gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complet... 40 8.7
43gb|AC004957.1| Homo sapiens PAC clone RP5-1093O17 from 7, comple... 40 8.7
44gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, compl... 40 8.7
45emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 o... 40 8.7
46gb|BC094546.1| Mus musculus TAF3 RNA polymerase II, TATA box bin... 40 8.7
47gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete seq... 40 8.7
48emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chr... 40 8.7
49gb|CP000302.1| Shewanella denitrificans OS217, complete genome 40 8.7
50emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 o... 40 8.7
51gb|AY303813.1| Carassius auratus Mx1 protein mRNA, complete cds 40 8.7
52emb|CR352237.9| Zebrafish DNA sequence from clone CH211-13I11 in... 40 8.7
53gb|AC092865.10| Homo sapiens 12 BAC RP11-113C12 (Roswell Park Ca... 40 8.7
54gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, comp... 40 8.7
55gb|AC114316.2| Homo sapiens chromosome 5 clone RP11-348J24, comp... 40 8.7
56dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, compl... 40 8.7
57gb|AC116332.2| Homo sapiens chromosome 5 clone CTD-2086E12, comp... 40 8.7
58gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome 40 8.7
59dbj|AK154372.1| Mus musculus NOD-derived CD11c +ve dendritic cel... 40 8.7
60gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, compl... 40 8.7
61gb|AC122406.5| Mus musculus BAC clone RP24-126L14 from chromosom... 40 8.7
62dbj|AK051249.1| Mus musculus 12 days embryo spinal ganglion cDNA... 40 8.7
63emb|BX883050.1| Rattus norvegicus chromosome 20, major histocomp... 40 8.7
64dbj|AK030878.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 8.7
65dbj|AK033848.1| Mus musculus adult male epididymis cDNA, RIKEN f... 40 8.7
66gb|BC039989.1| Mus musculus TAF3 RNA polymerase II, TATA box bin... 40 8.7
67emb|BX539343.9| Zebrafish DNA sequence from clone DKEY-58K6 in l... 40 8.7
68gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, compl... 40 8.7
69gb|AF003627.3| Homo sapiens chromosome X multiple clones map q28... 40 8.7
70gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, comp... 40 8.7
71emb|AJ431538.1|CFA431538 Canis familiaris partial OR16E01 gene f... 40 8.7
72emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on ch... 40 8.7
73dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, ... 40 8.7
74emb|BX510653.9| Zebrafish DNA sequence from clone DKEY-100F21 in... 40 8.7
75emb|AL954681.6| Zebrafish DNA sequence from clone BUSM1-84G17 in... 40 8.7
76gb|AC007371.16|AC007371 Homo sapiens, clone 24_A_9, complete seq... 40 8.7
77gb|AC006160.9|AC006160 Homo sapiens chromosome 4 clone C0481P14 ... 40 8.7
78emb|BX323850.16| Zebrafish DNA sequence from clone DKEY-156A5 in... 40 8.7
79dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.7
80ref|NM_027748.1| Mus musculus TAF3 RNA polymerase II, TATA box b... 40 8.7
81gb|BC089030.1| Mus musculus TAF3 RNA polymerase II, TATA box bin... 40 8.7
82emb|AL591109.8| Mouse DNA sequence from clone RP23-399F7 on chro... 40 8.7
83emb|AJ292189.1|MMU292189 Mus musculus partial mRNA for TAFII140 ... 40 8.7
84emb|X64970.1|CFDOPRX09 C.familiaris mRNA DOPCRX09 for olfactory ... 40 8.7
85dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21... 40 8.7 
>gb|AC128597.3| Rattus norvegicus  BAC CH230-62C6 (Children's Hospital Oakland Research
             Institute Rat (BN/SsNHsd/MCW) BAC library) complete
             sequence
          Length = 198520

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 431   aagttgtagttcaaagcaaaaataaa 456
             |||||| |||||||||||||||||||
Sbjct: 18925 aagttgaagttcaaagcaaaaataaa 18950
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>gb|AC005167.3| Arabidopsis thaliana chromosome 2 clone F12A24 map mi398, complete
             sequence
          Length = 93861

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 440   ttcaaagcaaaaataaatactt 461
             ||||||||||||||||||||||
Sbjct: 35991 ttcaaagcaaaaataaatactt 36012
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>gb|AC113469.9| Mus musculus chromosome 8, clone RP23-261B5, complete sequence
          Length = 198937

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 532   acatgaagctctagaagggacaaac 556
             |||||||||||||| ||||||||||
Sbjct: 22908 acatgaagctctaggagggacaaac 22932
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>gb|CP000017.1| Streptococcus pyogenes MGAS5005, complete genome
          Length = 1838554

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1129576 ctaaaccagataaacataact 1129596
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>gb|CP000003.1| Streptococcus pyogenes MGAS10394, complete genome
          Length = 1899877

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1184175 ctaaaccagataaacataact 1184195
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>gb|AE006578.1| Streptococcus pyogenes M1 GAS, section 107 of 167 of the complete
            genome
          Length = 10194

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 569  ctaaaccagataaacataact 589
            |||||||||||||||||||||
Sbjct: 3510 ctaaaccagataaacataact 3530
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>gb|CP000262.1| Streptococcus pyogenes MGAS10750, complete genome
          Length = 1937111

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1204752 ctaaaccagataaacataact 1204772
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>gb|CP000261.1| Streptococcus pyogenes MGAS2096, complete genome
          Length = 1860355

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1181383 ctaaaccagataaacataact 1181403
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>gb|CP000260.1| Streptococcus pyogenes MGAS10270, complete genome
          Length = 1928252

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1180426 ctaaaccagataaacataact 1180446
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>gb|CP000259.1| Streptococcus pyogenes MGAS9429, complete genome
          Length = 1836467

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1157470 ctaaaccagataaacataact 1157490
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>ref|XM_848623.1| PREDICTED: Canis familiaris similar to FLJ44048 protein (LOC611014),
             mRNA
          Length = 19071

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 347   atgaggaaaatcagttttttc 367
             |||||||||||||||||||||
Sbjct: 16223 atgaggaaaatcagttttttc 16243
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>ref|XM_722521.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00895)
           partial mRNA
          Length = 285

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 479 aataaaaagggtatgcatatg 499
           |||||||||||||||||||||
Sbjct: 276 aataaaaagggtatgcatatg 256
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>gb|CP000056.1| Streptococcus pyogenes MGAS6180, complete genome
          Length = 1897573

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1152838 ctaaaccagataaacataact 1152858
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>gb|AC110871.6| Homo sapiens 3 BAC RP11-639B4 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 97110

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 28/29 (96%), Gaps = 1/29 (3%)
 Strand = Plus / Minus

                                          
Query: 68    caagtgcatatcaa-aataattttacaaa 95
             |||||||||||||| ||||||||||||||
Sbjct: 46730 caagtgcatatcaataataattttacaaa 46702
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>gb|AC084217.7| Mus Musculus Strain C57BL6/J Chromosome 5 RP23-327P24, complete
             sequence
          Length = 216988

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 303   atttatttgttcttttccctt 323
             |||||||||||||||||||||
Sbjct: 28916 atttatttgttcttttccctt 28936
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>gb|AE010061.1| Streptococcus pyogenes strain MGAS8232, section 109 of 173 of the
            complete genome
          Length = 10209

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 569  ctaaaccagataaacataact 589
            |||||||||||||||||||||
Sbjct: 9569 ctaaaccagataaacataact 9589
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>gb|AC005184.1| Homo sapiens Xp22 bins 45-47 BAC GSHB-665N22 (Genome Systems Human BAC
             Library) complete sequence
          Length = 157981

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 131   agaaaaaggacccaacaagtg 151
             |||||||||||||||||||||
Sbjct: 43396 agaaaaaggacccaacaagtg 43376
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>gb|AC171739.3| Cavia porcellus clone CH234-497P15, complete sequence
          Length = 158596

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 344   gggatgaggaaaatcagttttttca 368
             |||| ||||||||||||||||||||
Sbjct: 85735 gggaagaggaaaatcagttttttca 85711
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>gb|AC007534.2|AC007534 Genomic sequence for Arabidopsis thaliana BAC F7F22 from chromosome I,
             complete sequence
          Length = 118986

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 347   atgaggaaaatcagttttttcaacc 371
             |||||||||||||| ||||||||||
Sbjct: 41626 atgaggaaaatcagctttttcaacc 41602
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>gb|AE014074.1| Streptococcus pyogenes MGAS315, complete genome
          Length = 1900521

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 569     ctaaaccagataaacataact 589
               |||||||||||||||||||||
Sbjct: 1121649 ctaaaccagataaacataact 1121669
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>dbj|BA000034.2| Streptococcus pyogenes SSI-1 DNA, complete genome
          Length = 1894275

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 569    ctaaaccagataaacataact 589
              |||||||||||||||||||||
Sbjct: 775235 ctaaaccagataaacataact 775215
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>emb|BX664610.10| Zebrafish DNA sequence from clone DKEY-11N6 in linkage group 22,
            complete sequence
          Length = 206964

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 241  tgcacaatatgccactcagccacat 265
            |||||||||||||| ||||||||||
Sbjct: 3197 tgcacaatatgccagtcagccacat 3173
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>emb|BX510957.15| Zebrafish DNA sequence from clone DKEY-69C1 in linkage group 20, complete
              sequence
          Length = 149635

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 441    tcaaagcaaaaataaatacttccagataa 469
              ||||||||||||| || ||||||||||||
Sbjct: 104558 tcaaagcaaaaatcaaaacttccagataa 104586
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>gb|AC116747.10| Mus musculus chromosome 8, clone RP23-80O20, complete sequence
          Length = 201313

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 532   acatgaagctctagaagggacaaac 556
             |||||||||||||| ||||||||||
Sbjct: 12820 acatgaagctctaggagggacaaac 12796
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>emb|AL772323.8| Mouse DNA sequence from clone RP23-370F9 on chromosome 2, complete
              sequence
          Length = 212243

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 60     aggcctaacaagtgcatatcaaaat 84
              |||||||| ||||||||||||||||
Sbjct: 105157 aggcctaaaaagtgcatatcaaaat 105133
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>emb|AL355177.14| Mouse DNA sequence from clone RP21-61H21 on chromosome 5, complete
              sequence
          Length = 134781

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 303    atttatttgttcttttccctt 323
              |||||||||||||||||||||
Sbjct: 105835 atttatttgttcttttccctt 105815
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>gb|AC129582.10| Mus musculus chromosome 5, clone RP24-485O24, complete sequence
          Length = 184794

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    ataattttacaaatgcacaa 102
             ||||||||||||||||||||
Sbjct: 89207 ataattttacaaatgcacaa 89188
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>gb|AC163210.4| Mus musculus chromosome 7, clone RP24-362L9, complete sequence
          Length = 161672

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 506    ctagtgagtttgattaaaca 525
              ||||||||||||||||||||
Sbjct: 151887 ctagtgagtttgattaaaca 151868
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>gb|AC119932.7| Mus musculus chromosome 15, clone RP24-260C11, complete sequence
          Length = 170117

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    tcttctcatactcttcctct 223
              ||||||||||||||||||||
Sbjct: 106535 tcttctcatactcttcctct 106554
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>gb|AC150855.6| Bos taurus  BAC CH240-472P12 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 168955

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 295    cagacaagatttatttgttc 314
              ||||||||||||||||||||
Sbjct: 140363 cagacaagatttatttgttc 140344
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>gb|AC104873.7| Mus musculus chromosome 1, clone RP23-434G18, complete sequence
          Length = 205266

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 516    tgattaaacataaataacat 535
              ||||||||||||||||||||
Sbjct: 182270 tgattaaacataaataacat 182289
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>gb|AE009178.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 204
            of 256 of the complete sequence
          Length = 10132

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 373  ccatgatggttcccatggcgctgt 396
            ||||||||||| ||||||||||||
Sbjct: 8734 ccatgatggtttccatggcgctgt 8711
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>gb|AC167969.2| Mus musculus BAC clone RP24-446H24 from chromosome 17, complete
             sequence
          Length = 178774

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   ttttcccttgcttgccttgt 334
             ||||||||||||||||||||
Sbjct: 67119 ttttcccttgcttgccttgt 67100
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>gb|AY355870.1| Canis familiaris isolate cOR5H12 olfactory receptor family 5
           subfamily H-like gene, partial sequence
          Length = 831

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 445 agcaaaaataaatacttccagataatta 472
           ||||||||||||||||  ||||||||||
Sbjct: 609 agcaaaaataaatactatcagataatta 582
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>ref|XM_844911.1| PREDICTED: Canis familiaris similar to olfactory receptor, family
           5, subfamily H, member 2 (LOC608017), mRNA
          Length = 951

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 445 agcaaaaataaatacttccagataatta 472
           ||||||||||||||||  ||||||||||
Sbjct: 630 agcaaaaataaatactatcagataatta 603
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>ref|XM_545065.2| PREDICTED: Canis familiaris hypothetical gene supported by X64971
           (LOC487943), mRNA
          Length = 1224

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 445 agcaaaaataaatacttccagataatta 472
           ||||||||||||||||  ||||||||||
Sbjct: 903 agcaaaaataaatactatcagataatta 876
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>gb|AC093819.4| Homo sapiens BAC clone RP11-368D18 from 4, complete sequence
          Length = 168474

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 528   aataacatgaagctctagaaggga 551
             ||||| ||||||||||||||||||
Sbjct: 32123 aataatatgaagctctagaaggga 32146
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>emb|AJ410870.2|SSC410870 Sus scrofa  COX7A1 gene, CAPNS1 gene, CKAP1 gene, POLR2I gene and
             CLIPR-59 gene (partial)
          Length = 147663

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 520   taaacataaataacatgaag 539
             ||||||||||||||||||||
Sbjct: 25958 taaacataaataacatgaag 25939
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>gb|AC124370.3| Mus musculus BAC clone RP24-554F1 from chromosome 3, complete sequence
          Length = 181208

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 350   aggaaaatcagttttttcaa 369
             ||||||||||||||||||||
Sbjct: 69177 aggaaaatcagttttttcaa 69196
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>emb|CR955034.5| Wallaby DNA sequence from clone GRWB-130P10, complete sequence
          Length = 176287

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 79    caaaataattttacaaatgcacaa 102
             ||||||||| ||||||||||||||
Sbjct: 50749 caaaataatcttacaaatgcacaa 50726
to top
>emb|AL672152.8| Mouse DNA sequence from clone RP23-426A16 on chromosome X, complete
              sequence
          Length = 200643

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 439    gttcaaagcaaaaataaata 458
              ||||||||||||||||||||
Sbjct: 136339 gttcaaagcaaaaataaata 136358
to top
>gb|AC004485.2| Homo sapiens BAC clone CTB-118E13 from 7, complete sequence
          Length = 185516

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 396   ttctggctgtttgaacctca 415
             ||||||||||||||||||||
Sbjct: 74346 ttctggctgtttgaacctca 74365
to top
>gb|AC004957.1| Homo sapiens PAC clone RP5-1093O17 from 7, complete sequence
          Length = 160687

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 448    aaaaataaatacttccagataatt 471
              |||||||||| |||||||||||||
Sbjct: 129536 aaaaataaattcttccagataatt 129559
to top
>gb|AC142353.1| Pan troglodytes BAC clone RP43-21M1 from 7, complete sequence
          Length = 182634

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 396    ttctggctgtttgaacctca 415
              ||||||||||||||||||||
Sbjct: 164538 ttctggctgtttgaacctca 164519
to top
>emb|Z82189.1|HS170A21 Human DNA sequence from clone RP1-170A21 on chromosome 22, complete
              sequence
          Length = 176947

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 76     tatcaaaataattttacaaatgcacaat 103
              ||||||||||||| || |||||||||||
Sbjct: 148077 tatcaaaataattgtagaaatgcacaat 148104
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>gb|BC094546.1| Mus musculus TAF3 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor, mRNA (cDNA clone IMAGE:6404518),
            partial cds
          Length = 1867

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  cagttttttcaaccaccatg 377
            ||||||||||||||||||||
Sbjct: 1223 cagttttttcaaccaccatg 1204
to top
>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 345     ggatgaggaaaatcagtttt 364
               ||||||||||||||||||||
Sbjct: 2080719 ggatgaggaaaatcagtttt 2080738
to top
>emb|AL590489.11| Human DNA sequence from clone RP11-412O4 on chromosome 6q16.2-21
             Contains part of the C6orf210 gene for chromosome 6 open
             reading frame 210, complete sequence
          Length = 130146

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 430   aaagttgtagttcaaagcaaaaataaat 457
             ||||||||| ||||||||||||| ||||
Sbjct: 80044 aaagttgtaattcaaagcaaaaaaaaat 80017
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>gb|CP000302.1| Shewanella denitrificans OS217, complete genome
          Length = 4545906

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 472     atggtctaataaaaagggta 491
               ||||||||||||||||||||
Sbjct: 2680245 atggtctaataaaaagggta 2680226
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>emb|AL022154.2|HS249C1 Human DNA sequence from clone RP1-249C1 on chromosome Xq21.1-22.2,
             complete sequence
          Length = 118153

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   agcacaagtttcttctcata 213
             ||||||||||||||||||||
Sbjct: 41909 agcacaagtttcttctcata 41890
to top
>gb|AY303813.1| Carassius auratus Mx1 protein mRNA, complete cds
          Length = 2853

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 443 aaagcaaaaataaatacttc 462
           ||||||||||||||||||||
Sbjct: 78  aaagcaaaaataaatacttc 59
to top
>emb|CR352237.9| Zebrafish DNA sequence from clone CH211-13I11 in linkage group 11,
             complete sequence
          Length = 193648

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 439   gttcaaagcaaaaataaata 458
             ||||||||||||||||||||
Sbjct: 84324 gttcaaagcaaaaataaata 84305
to top
>gb|AC092865.10| Homo sapiens 12 BAC RP11-113C12 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 117296

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    acaaatgcacaatagaatac 110
             ||||||||||||||||||||
Sbjct: 11602 acaaatgcacaatagaatac 11621
to top
>gb|AC024601.9| Homo sapiens chromosome 10 clone RP11-262I2, complete sequence
          Length = 169293

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 532    acatgaagctctagaagggacaaa 555
              ||||||||||||||||| ||||||
Sbjct: 145849 acatgaagctctagaagagacaaa 145872
to top
>gb|AC114316.2| Homo sapiens chromosome 5 clone RP11-348J24, complete sequence
          Length = 187136

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 431    aagttgtagttcaaagcaaaaataaata 458
              |||| |||||||||||||| ||||||||
Sbjct: 147569 aagtggtagttcaaagcaacaataaata 147542
to top
>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 345     ggatgaggaaaatcagtttt 364
               ||||||||||||||||||||
Sbjct: 2386720 ggatgaggaaaatcagtttt 2386701
to top
>gb|AC116332.2| Homo sapiens chromosome 5 clone CTD-2086E12, complete sequence
          Length = 70453

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 431   aagttgtagttcaaagcaaaaataaata 458
             |||| |||||||||||||| ||||||||
Sbjct: 50059 aagtggtagttcaaagcaacaataaata 50086
to top
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome
          Length = 2841581

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 373     ccatgatggttcccatggcgctgt 396
               ||||||||||| ||||||||||||
Sbjct: 2266242 ccatgatggtttccatggcgctgt 2266219
to top
>dbj|AK154372.1| Mus musculus NOD-derived CD11c +ve dendritic cells cDNA, RIKEN
            full-length enriched library, clone:F630025E04
            product:TAF3 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor, full insert sequence
          Length = 3771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  cagttttttcaaccaccatg 377
            ||||||||||||||||||||
Sbjct: 1275 cagttttttcaaccaccatg 1256
to top
>gb|AC091989.3| Homo sapiens chromosome 5 clone RP11-76H13, complete sequence
          Length = 168575

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 80    aaaataattttacaaatgca 99
             ||||||||||||||||||||
Sbjct: 97594 aaaataattttacaaatgca 97575
to top
>gb|AC122406.5| Mus musculus BAC clone RP24-126L14 from chromosome 17, complete sequence
          Length = 161377

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 315    ttttcccttgcttgccttgt 334
              ||||||||||||||||||||
Sbjct: 136273 ttttcccttgcttgccttgt 136254
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>dbj|AK051249.1| Mus musculus 12 days embryo spinal ganglion cDNA, RIKEN full-length
           enriched library, clone:D130023D18 product:TAFII140
           PROTEIN (FRAGMENT) homolog [Mus musculus], full insert
           sequence
          Length = 1702

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 cagttttttcaaccaccatg 377
           ||||||||||||||||||||
Sbjct: 637 cagttttttcaaccaccatg 618
to top
>emb|BX883050.1| Rattus norvegicus chromosome 20, major histocompatibility complex,
              assembled from 40 BACs, strain Brown Norway (BN/ssNHsd),
              RT1n haplotype; segment 9/11
          Length = 348879

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 128    catagaaaaaggacccaaca 147
              ||||||||||||||||||||
Sbjct: 320878 catagaaaaaggacccaaca 320897
to top
>dbj|AK030878.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830438I15 product:TAFII140 PROTEIN
           (FRAGMENT) homolog [Mus musculus], full insert sequence
          Length = 3873

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 cagttttttcaaccaccatg 377
           ||||||||||||||||||||
Sbjct: 335 cagttttttcaaccaccatg 316
to top
>dbj|AK033848.1| Mus musculus adult male epididymis cDNA, RIKEN full-length enriched
           library, clone:9230119L08 product:TAFII140 PROTEIN
           (FRAGMENT) homolog [Mus musculus], full insert sequence
          Length = 1503

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 358 cagttttttcaaccaccatg 377
           ||||||||||||||||||||
Sbjct: 916 cagttttttcaaccaccatg 897
to top
>gb|BC039989.1| Mus musculus TAF3 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor, mRNA (cDNA clone IMAGE:5146472),
            containing frame-shift errors
          Length = 2105

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  cagttttttcaaccaccatg 377
            ||||||||||||||||||||
Sbjct: 1222 cagttttttcaaccaccatg 1203
to top
>emb|BX539343.9| Zebrafish DNA sequence from clone DKEY-58K6 in linkage group 17, complete
              sequence
          Length = 191248

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 436    gtagttcaaagcaaaaataa 455
              ||||||||||||||||||||
Sbjct: 171267 gtagttcaaagcaaaaataa 171248
to top
>gb|AC010894.10| Homo sapiens BAC clone RP11-483E17 from 2, complete sequence
          Length = 181663

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 450   aaataaatacttccagataattat 473
             |||||||||||| |||||||||||
Sbjct: 96658 aaataaatactttcagataattat 96681
to top
>gb|AF003627.3| Homo sapiens chromosome X multiple clones map q28, complete sequence
          Length = 184788

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    gttcaaagcaaaaataaata 458
              ||||||||||||||||||||
Sbjct: 118827 gttcaaagcaaaaataaata 118808
to top
>gb|AC154119.8| Mus musculus chromosome 1, clone RP24-103A6, complete sequence
          Length = 159230

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 516    tgattaaacataaataacat 535
              ||||||||||||||||||||
Sbjct: 141271 tgattaaacataaataacat 141252
to top
>emb|AJ431538.1|CFA431538 Canis familiaris partial OR16E01 gene for olfactory receptor
          Length = 487

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 445 agcaaaaataaatacttccagataatta 472
           ||||||||||||||||  ||||||||||
Sbjct: 241 agcaaaaataaatactatcagataatta 214
to top
>emb|AL928704.10| Mouse DNA sequence from clone RP23-393G10 on chromosome 2, complete
             sequence
          Length = 171715

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 358   cagttttttcaaccaccatg 377
             ||||||||||||||||||||
Sbjct: 75396 cagttttttcaaccaccatg 75415
to top
>dbj|BS000086.1| Pan troglodytes chromosome 22 clone:PTB-102L15, map 22, complete
              sequences
          Length = 213585

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 443    aaagcaaaaataaatacttc 462
              ||||||||||||||||||||
Sbjct: 122751 aaagcaaaaataaatacttc 122732
to top
>emb|BX510653.9| Zebrafish DNA sequence from clone DKEY-100F21 in linkage group 20,
             complete sequence
          Length = 90530

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 513   gtttgattaaacataaataa 532
             ||||||||||||||||||||
Sbjct: 26067 gtttgattaaacataaataa 26086
to top
>emb|AL954681.6| Zebrafish DNA sequence from clone BUSM1-84G17 in linkage group 20,
            complete sequence
          Length = 86165

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 513  gtttgattaaacataaataa 532
            ||||||||||||||||||||
Sbjct: 3608 gtttgattaaacataaataa 3589
to top
>gb|AC007371.16|AC007371 Homo sapiens, clone 24_A_9, complete sequence
          Length = 168734

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 430   aaagttgtagttcaaagcaaaaataaat 457
             ||||||||| ||||||||||||| ||||
Sbjct: 17769 aaagttgtaattcaaagcaaaaaaaaat 17796
to top
>gb|AC006160.9|AC006160 Homo sapiens chromosome 4 clone C0481P14 map 4p16, complete sequence
          Length = 179310

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 347    atgaggaaaatcagtttttt 366
              ||||||||||||||||||||
Sbjct: 149422 atgaggaaaatcagtttttt 149441
to top
>emb|BX323850.16| Zebrafish DNA sequence from clone DKEY-156A5 in linkage group 11,
              complete sequence
          Length = 156989

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 439    gttcaaagcaaaaataaata 458
              ||||||||||||||||||||
Sbjct: 123350 gttcaaagcaaaaataaata 123331
to top
>dbj|AP001687.1| Homo sapiens genomic DNA, chromosome 21q, section 31/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   aaagcaaaaataaatacttc 462
             ||||||||||||||||||||
Sbjct: 64990 aaagcaaaaataaatacttc 64971
to top
>ref|NM_027748.1| Mus musculus TAF3 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor (Taf3), mRNA
          Length = 3771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  cagttttttcaaccaccatg 377
            ||||||||||||||||||||
Sbjct: 1275 cagttttttcaaccaccatg 1256
to top
>gb|BC089030.1| Mus musculus TAF3 RNA polymerase II, TATA box binding protein
            (TBP)-associated factor, mRNA (cDNA clone
            IMAGE:30660628), partial cds
          Length = 3620

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  cagttttttcaaccaccatg 377
            ||||||||||||||||||||
Sbjct: 1105 cagttttttcaaccaccatg 1086
to top
>emb|AL591109.8| Mouse DNA sequence from clone RP23-399F7 on chromosome 11, complete
             sequence
          Length = 42754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 252   ccactcagccacatgctgcccaac 275
             |||||||||||||||||| |||||
Sbjct: 22598 ccactcagccacatgctgtccaac 22621
to top
>emb|AJ292189.1|MMU292189 Mus musculus partial mRNA for TAFII140 protein, RNA polymerase II
            transcription factor TFIID subunit (TAF140 gene)
          Length = 2849

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 358  cagttttttcaaccaccatg 377
            ||||||||||||||||||||
Sbjct: 1057 cagttttttcaaccaccatg 1038
to top
>emb|X64970.1|CFDOPRX09 C.familiaris mRNA DOPCRX09 for olfactory receptor
          Length = 343

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 445 agcaaaaataaatacttccagataatta 472
           ||||||||||||||||  ||||||||||
Sbjct: 235 agcaaaaataaatactatcagataatta 208
to top
>dbj|AP001253.1| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B658E16,
             LL56-APP region, complete sequence
          Length = 140249

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 443   aaagcaaaaataaatacttc 462
             ||||||||||||||||||||
Sbjct: 93795 aaagcaaaaataaatacttc 93776


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8,211,751
Number of Sequences: 3902068
Number of extensions: 8211751
Number of successful extensions: 174226
Number of sequences better than 10.0: 85
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 173776
Number of HSP's gapped (non-prelim): 452
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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