ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62k02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC098683.18| Mus musculus strain 129/Sv clone ct7-128f23 map ... 44 0.17
2gb|AC115293.5| Mus musculus BAC clone RP23-92N2 from chromosome ... 44 0.17
3gb|AC098684.13| Mus musculus strain 129/Sv clone ct7-391l15 map ... 44 0.17
4gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome ... 44 0.17
5gb|AC161505.4| Mus musculus chromosome 8, clone RP24-307K17, com... 40 2.6
6gb|AY022228.1| Oryza sativa microsatellite MRG4553 containing (T... 40 2.6
7gb|AC137096.10| Mus musculus chromosome 8, clone RP24-473D4, com... 40 2.6
8gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome... 40 2.6
9emb|AL365508.19| Human DNA sequence from clone RP11-301B7 on chr... 40 2.6
10dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6
11dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic D... 40 2.6

>gb|AC098683.18| Mus musculus strain 129/Sv clone ct7-128f23 map 5, complete sequence
          Length = 112727

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 133   ttactgcaatacatgtccttga 154
             ||||||||||||||||||||||
Sbjct: 11288 ttactgcaatacatgtccttga 11309



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>gb|AC115293.5| Mus musculus BAC clone RP23-92N2 from chromosome 5, complete sequence
          Length = 239951

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 133   ttactgcaatacatgtccttga 154
             ||||||||||||||||||||||
Sbjct: 64127 ttactgcaatacatgtccttga 64106



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>gb|AC098684.13| Mus musculus strain 129/Sv clone ct7-391l15 map 5, complete sequence
          Length = 150686

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 133    ttactgcaatacatgtccttga 154
              ||||||||||||||||||||||
Sbjct: 104516 ttactgcaatacatgtccttga 104537



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>gb|AC156029.2| Mus musculus BAC clone RP23-42O8 from chromosome 5, complete sequence
          Length = 235471

 Score = 44.1 bits (22), Expect = 0.17
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 133   ttactgcaatacatgtccttga 154
             ||||||||||||||||||||||
Sbjct: 85018 ttactgcaatacatgtccttga 85039



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>gb|AC161505.4| Mus musculus chromosome 8, clone RP24-307K17, complete sequence
          Length = 215514

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 186    acagcaatgataactctaag 205
              ||||||||||||||||||||
Sbjct: 139983 acagcaatgataactctaag 139964



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>gb|AY022228.1| Oryza sativa microsatellite MRG4553 containing (TG)X15, genomic
           sequence
          Length = 230

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 15  caacaaacaaatattccaag 34
           ||||||||||||||||||||
Sbjct: 158 caacaaacaaatattccaag 139



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>gb|AC137096.10| Mus musculus chromosome 8, clone RP24-473D4, complete sequence
          Length = 149463

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 186   acagcaatgataactctaag 205
             ||||||||||||||||||||
Sbjct: 15177 acagcaatgataactctaag 15158



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>gb|AC127677.4| Mus musculus BAC clone RP24-226C2 from chromosome 8, complete sequence
          Length = 167913

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 186   acagcaatgataactctaag 205
             ||||||||||||||||||||
Sbjct: 54857 acagcaatgataactctaag 54876



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>emb|AL365508.19| Human DNA sequence from clone RP11-301B7 on chromosome 6 Contains part
             of the gene for a novel protein highly similar to
             FLJ30899, complete sequence
          Length = 96315

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 14    ccaacaaacaaatattccaa 33
             ||||||||||||||||||||
Sbjct: 41868 ccaacaaacaaatattccaa 41849



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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 15      caacaaacaaatattccaag 34
               ||||||||||||||||||||
Sbjct: 4666969 caacaaacaaatattccaag 4666988



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>dbj|AP004066.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1572_F02
          Length = 93626

 Score = 40.1 bits (20), Expect = 2.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    caacaaacaaatattccaag 34
             ||||||||||||||||||||
Sbjct: 39041 caacaaacaaatattccaag 39060


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,630,034
Number of Sequences: 3902068
Number of extensions: 1630034
Number of successful extensions: 111883
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111831
Number of HSP's gapped (non-prelim): 52
length of query: 208
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 186
effective length of database: 17,147,199,772
effective search space: 3189379157592
effective search space used: 3189379157592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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