ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62k01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CRBN_PONPY (Q5R6Y2) Protein cereblon 80 5e-15
2CRBN_HUMAN (Q96SW2) Protein cereblon 80 5e-15
3CRBN_RAT (Q56AP7) Protein cereblon 77 3e-14
4CRBN_MOUSE (Q8C7D2) Protein cereblon (Protein PiL) 77 3e-14
5CRBN_XENTR (Q640S2) Protein cereblon 71 2e-12
6CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor 32 1.1
7FZD10_MOUSE (Q8BKG4) Frizzled 10 precursor (Frizzled-10) (Fz-10) 31 2.6
8TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin) 31 2.6
9DSBD1_PSEAE (Q9HUW5) Thiol:disulfide interchange protein dsbD 1 ... 30 4.4
10FZD10_HUMAN (Q9ULW2) Frizzled 10 precursor (Frizzled-10) (Fz-10)... 29 7.5
11YXIM_BACSU (P42304) Hypothetical protein yxiM precursor 29 7.5

>CRBN_PONPY (Q5R6Y2) Protein cereblon|
          Length = 429

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = -1

Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI-RSCQIA 363
           A  L++ G P+ EHSWFPGYAWT+A C  C S+IGW FTATK+ + P+ FWG+ RS  + 
Sbjct: 352 ACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 411

Query: 362 DIVD 351
            I D
Sbjct: 412 TIPD 415



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>CRBN_HUMAN (Q96SW2) Protein cereblon|
          Length = 442

 Score = 79.7 bits (195), Expect = 5e-15
 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = -1

Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI-RSCQIA 363
           A  L++ G P+ EHSWFPGYAWT+A C  C S+IGW FTATK+ + P+ FWG+ RS  + 
Sbjct: 365 ACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 424

Query: 362 DIVD 351
            I D
Sbjct: 425 TIPD 428



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>CRBN_RAT (Q56AP7) Protein cereblon|
          Length = 445

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -1

Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI 381
           A+ L++ G P+  HSWFPGYAWTIA C  C S+IGW FTATK+ + P+ FWG+
Sbjct: 368 ASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGL 420



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>CRBN_MOUSE (Q8C7D2) Protein cereblon (Protein PiL)|
          Length = 445

 Score = 77.0 bits (188), Expect = 3e-14
 Identities = 31/53 (58%), Positives = 40/53 (75%)
 Frame = -1

Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI 381
           A+ L++ G P+  HSWFPGYAWTIA C  C S+IGW FTATK+ + P+ FWG+
Sbjct: 368 ASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGL 420



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>CRBN_XENTR (Q640S2) Protein cereblon|
          Length = 447

 Score = 70.9 bits (172), Expect = 2e-12
 Identities = 28/53 (52%), Positives = 38/53 (71%)
 Frame = -1

Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI 381
           A  L + G P+ E+SWFPG+AWTIA C  C S++GW FTA ++ L P+ FWG+
Sbjct: 368 AFNLSLVGRPSTENSWFPGFAWTIAQCRVCGSHMGWKFTAVRKDLSPQKFWGL 420



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>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor|
          Length = 684

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = -2

Query: 520 RGIP-QRNTAGFQDTPGLSHRALPATPT*AGCSLPPRGICIR 398
           +G P +R + G    PGL  + LP  P  AG S PP GI +R
Sbjct: 97  KGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLR 138



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>FZD10_MOUSE (Q8BKG4) Frizzled 10 precursor (Frizzled-10) (Fz-10)|
          Length = 582

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 15/31 (48%), Positives = 16/31 (51%)
 Frame = +3

Query: 387 PEEFRMQIPLGGSEQPAYVGVAGRARCDSPG 479
           P  FR Q P    E P   G  GRA CD+PG
Sbjct: 167 PPLFRPQRPHSAQEHPLKDGGPGRAGCDNPG 197



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>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)|
          Length = 1353

 Score = 30.8 bits (68), Expect = 2.6
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
 Frame = +3

Query: 354 YNIGDLAAADPPEEFRMQIPLGGSEQPAYVGVAGRARCDSPGVSWKPAVF--LCGIPLNI 527
           +N+  L A   P E R+++    +E+PA     G A C SP V  +P VF  +  I + +
Sbjct: 17  FNLLLLGAVLKPFECRLEVTTEPAERPAVDEEGGLANC-SPPVKEQPMVFHHIYNINVPV 75

Query: 528 KPCC 539
             CC
Sbjct: 76  DSCC 79



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>DSBD1_PSEAE (Q9HUW5) Thiol:disulfide interchange protein dsbD 1 precursor (EC|
           1.8.1.8) (Protein-disulfide reductase 1) (Disulfide
           reductase 1)
          Length = 591

 Score = 30.0 bits (66), Expect = 4.4
 Identities = 20/68 (29%), Positives = 26/68 (38%)
 Frame = +3

Query: 333 FLLLSCIYNIGDLAAADPPEEFRMQIPLGGSEQPAYVGVAGRARCDSPGVSWKPAVFLCG 512
           + L+       D     PPE  R  I  GG+  PA    AG+   +  G       FL G
Sbjct: 125 YTLVVTYQGCADKGLCYPPETRRFDID-GGAATPAASDAAGKGPLEHKGKRSLLFFFLAG 183

Query: 513 IPLNIKPC 536
           + L   PC
Sbjct: 184 LTLTFTPC 191



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>FZD10_HUMAN (Q9ULW2) Frizzled 10 precursor (Frizzled-10) (Fz-10) (hFz10) (FzE7)|
          Length = 581

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = +3

Query: 387 PEEFRMQIPLGGSEQPAYVGVAGRARCDSPG 479
           P  FR Q P    E P   G  GR  CD+PG
Sbjct: 166 PPLFRPQRPHSAQEHPLKDGGPGRGGCDNPG 196



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>YXIM_BACSU (P42304) Hypothetical protein yxiM precursor|
          Length = 382

 Score = 29.3 bits (64), Expect = 7.5
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +3

Query: 315 WRAASFFLLLS-CIYNIGDLAAADPPEEFRMQIPLG-GSEQPAYVGVAGRARCD 470
           W AA F ++L  C   I ++ AA+P      Q   G GS +P Y+GV    R D
Sbjct: 4   WMAAVFVMMLMLCFGGIENVKAAEPKV---YQFDFGSGSMEPGYIGVRASDRYD 54


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 83,185,862
Number of Sequences: 219361
Number of extensions: 1768372
Number of successful extensions: 4543
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4543
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4315578075
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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