Clone Name | rbah62k01 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CRBN_PONPY (Q5R6Y2) Protein cereblon | 80 | 5e-15 | 2 | CRBN_HUMAN (Q96SW2) Protein cereblon | 80 | 5e-15 | 3 | CRBN_RAT (Q56AP7) Protein cereblon | 77 | 3e-14 | 4 | CRBN_MOUSE (Q8C7D2) Protein cereblon (Protein PiL) | 77 | 3e-14 | 5 | CRBN_XENTR (Q640S2) Protein cereblon | 71 | 2e-12 | 6 | CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor | 32 | 1.1 | 7 | FZD10_MOUSE (Q8BKG4) Frizzled 10 precursor (Frizzled-10) (Fz-10) | 31 | 2.6 | 8 | TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin) | 31 | 2.6 | 9 | DSBD1_PSEAE (Q9HUW5) Thiol:disulfide interchange protein dsbD 1 ... | 30 | 4.4 | 10 | FZD10_HUMAN (Q9ULW2) Frizzled 10 precursor (Frizzled-10) (Fz-10)... | 29 | 7.5 | 11 | YXIM_BACSU (P42304) Hypothetical protein yxiM precursor | 29 | 7.5 |
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>CRBN_PONPY (Q5R6Y2) Protein cereblon| Length = 429 Score = 79.7 bits (195), Expect = 5e-15 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Frame = -1 Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI-RSCQIA 363 A L++ G P+ EHSWFPGYAWT+A C C S+IGW FTATK+ + P+ FWG+ RS + Sbjct: 352 ACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 411 Query: 362 DIVD 351 I D Sbjct: 412 TIPD 415
>CRBN_HUMAN (Q96SW2) Protein cereblon| Length = 442 Score = 79.7 bits (195), Expect = 5e-15 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 1/64 (1%) Frame = -1 Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI-RSCQIA 363 A L++ G P+ EHSWFPGYAWT+A C C S+IGW FTATK+ + P+ FWG+ RS + Sbjct: 365 ACNLNLIGRPSTEHSWFPGYAWTVAQCKICASHIGWKFTATKKDMSPQKFWGLTRSALLP 424 Query: 362 DIVD 351 I D Sbjct: 425 TIPD 428
>CRBN_RAT (Q56AP7) Protein cereblon| Length = 445 Score = 77.0 bits (188), Expect = 3e-14 Identities = 31/53 (58%), Positives = 40/53 (75%) Frame = -1 Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI 381 A+ L++ G P+ HSWFPGYAWTIA C C S+IGW FTATK+ + P+ FWG+ Sbjct: 368 ASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGL 420
>CRBN_MOUSE (Q8C7D2) Protein cereblon (Protein PiL)| Length = 445 Score = 77.0 bits (188), Expect = 3e-14 Identities = 31/53 (58%), Positives = 40/53 (75%) Frame = -1 Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI 381 A+ L++ G P+ HSWFPGYAWTIA C C S+IGW FTATK+ + P+ FWG+ Sbjct: 368 ASNLNLIGRPSTVHSWFPGYAWTIAQCKICASHIGWKFTATKKDMSPQKFWGL 420
>CRBN_XENTR (Q640S2) Protein cereblon| Length = 447 Score = 70.9 bits (172), Expect = 2e-12 Identities = 28/53 (52%), Positives = 38/53 (71%) Frame = -1 Query: 539 ATGLDIEGDPTEEHSWFPGYAWTIASCSSCDSNIGWLFTATKRYLHPKFFWGI 381 A L + G P+ E+SWFPG+AWTIA C C S++GW FTA ++ L P+ FWG+ Sbjct: 368 AFNLSLVGRPSTENSWFPGFAWTIAQCRVCGSHMGWKFTAVRKDLSPQKFWGL 420
>CO9A3_HUMAN (Q14050) Collagen alpha-3(IX) chain precursor| Length = 684 Score = 32.0 bits (71), Expect = 1.1 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 1/42 (2%) Frame = -2 Query: 520 RGIP-QRNTAGFQDTPGLSHRALPATPT*AGCSLPPRGICIR 398 +G P +R + G PGL + LP P AG S PP GI +R Sbjct: 97 KGAPGERGSLGPPGPPGLGGKGLPGPPGEAGVSGPPGGIGLR 138
>FZD10_MOUSE (Q8BKG4) Frizzled 10 precursor (Frizzled-10) (Fz-10)| Length = 582 Score = 30.8 bits (68), Expect = 2.6 Identities = 15/31 (48%), Positives = 16/31 (51%) Frame = +3 Query: 387 PEEFRMQIPLGGSEQPAYVGVAGRARCDSPG 479 P FR Q P E P G GRA CD+PG Sbjct: 167 PPLFRPQRPHSAQEHPLKDGGPGRAGCDNPG 197
>TENR_CHICK (Q00546) Tenascin-R precursor (TN-R) (Restrictin)| Length = 1353 Score = 30.8 bits (68), Expect = 2.6 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 2/64 (3%) Frame = +3 Query: 354 YNIGDLAAADPPEEFRMQIPLGGSEQPAYVGVAGRARCDSPGVSWKPAVF--LCGIPLNI 527 +N+ L A P E R+++ +E+PA G A C SP V +P VF + I + + Sbjct: 17 FNLLLLGAVLKPFECRLEVTTEPAERPAVDEEGGLANC-SPPVKEQPMVFHHIYNINVPV 75 Query: 528 KPCC 539 CC Sbjct: 76 DSCC 79
>DSBD1_PSEAE (Q9HUW5) Thiol:disulfide interchange protein dsbD 1 precursor (EC| 1.8.1.8) (Protein-disulfide reductase 1) (Disulfide reductase 1) Length = 591 Score = 30.0 bits (66), Expect = 4.4 Identities = 20/68 (29%), Positives = 26/68 (38%) Frame = +3 Query: 333 FLLLSCIYNIGDLAAADPPEEFRMQIPLGGSEQPAYVGVAGRARCDSPGVSWKPAVFLCG 512 + L+ D PPE R I GG+ PA AG+ + G FL G Sbjct: 125 YTLVVTYQGCADKGLCYPPETRRFDID-GGAATPAASDAAGKGPLEHKGKRSLLFFFLAG 183 Query: 513 IPLNIKPC 536 + L PC Sbjct: 184 LTLTFTPC 191
>FZD10_HUMAN (Q9ULW2) Frizzled 10 precursor (Frizzled-10) (Fz-10) (hFz10) (FzE7)| Length = 581 Score = 29.3 bits (64), Expect = 7.5 Identities = 14/31 (45%), Positives = 15/31 (48%) Frame = +3 Query: 387 PEEFRMQIPLGGSEQPAYVGVAGRARCDSPG 479 P FR Q P E P G GR CD+PG Sbjct: 166 PPLFRPQRPHSAQEHPLKDGGPGRGGCDNPG 196
>YXIM_BACSU (P42304) Hypothetical protein yxiM precursor| Length = 382 Score = 29.3 bits (64), Expect = 7.5 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%) Frame = +3 Query: 315 WRAASFFLLLS-CIYNIGDLAAADPPEEFRMQIPLG-GSEQPAYVGVAGRARCD 470 W AA F ++L C I ++ AA+P Q G GS +P Y+GV R D Sbjct: 4 WMAAVFVMMLMLCFGGIENVKAAEPKV---YQFDFGSGSMEPGYIGVRASDRYD 54 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 83,185,862 Number of Sequences: 219361 Number of extensions: 1768372 Number of successful extensions: 4543 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4387 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4543 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4315578075 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)