ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62j24 |
|---|---|
| Clone Library Name | barley_pub |
>VKOR1_RAT (Q6TEK4) Vitamin K epoxide reductase complex subunit 1 (EC 1.1.4.1)| (Vitamin K1 2,3-epoxide reductase subunit 1) Length = 161 Score = 35.4 bits (80), Expect = 0.034 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 4/61 (6%) Frame = -2 Query: 203 SSSLLYMMTDRVLLAVANLKGK-ECVLSILASVILVAGCTLLCWLM---LKSCCIVCTCT 36 S+S+ M + L + L+G+ +L IL+S++ VAG L W++ L CIVC T Sbjct: 79 SNSIFGCMFYTIQLLLGCLRGRWASILLILSSLVSVAGSLYLAWILFFVLYDFCIVCITT 138 Query: 35 Y 33 Y Sbjct: 139 Y 139
>VKOR1_MOUSE (Q9CRC0) Vitamin K epoxide reductase complex subunit 1 (EC 1.1.4.1)| (Vitamin K1 2,3-epoxide reductase subunit 1) Length = 161 Score = 34.7 bits (78), Expect = 0.058 Identities = 21/65 (32%), Positives = 36/65 (55%), Gaps = 4/65 (6%) Frame = -2 Query: 203 SSSLLYMMTDRVLLAVANLKGK-ECVLSILASVILVAGCTLLCWLM---LKSCCIVCTCT 36 S+S+ + + L + L+G+ +L +L+S++ VAG L W++ L CIVC T Sbjct: 79 SNSIFGCLFYTLQLLLGCLRGRWASILLVLSSLVSVAGSVYLAWILFFVLYDFCIVCITT 138 Query: 35 YTSSV 21 Y +V Sbjct: 139 YAINV 143
>VKOR1_HUMAN (Q9BQB6) Vitamin K epoxide reductase complex subunit 1 (EC 1.1.4.1)| (Vitamin K1 2,3-epoxide reductase subunit 1) Length = 163 Score = 32.7 bits (73), Expect = 0.22 Identities = 16/40 (40%), Positives = 24/40 (60%), Gaps = 3/40 (7%) Frame = -2 Query: 131 VLSILASVILVAGCTLLCWLM---LKSCCIVCTCTYTSSV 21 VL +L+S++ +AG L W++ L CIVC TY +V Sbjct: 104 VLMLLSSLVSLAGSVYLAWILFFVLYDFCIVCITTYAINV 143
>VK02_SWPVK (Q08520) G-protein coupled receptor homolog K2| Length = 370 Score = 28.9 bits (63), Expect = 3.2 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -2 Query: 173 RVLLAVANLKGKECVLSILASVILVAGCTLLCWLMLKSCCIVCTCT--YTSSV 21 R+ V L+ + SI V+++ C+L+CW+ L ++ T YTS++ Sbjct: 247 RIFTTVVRLRNRRKYKSIKI-VLMIVVCSLICWIPLYIVLMIATIVSLYTSNI 298
>CHST1_BRARE (Q6DBY9) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan| sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) Length = 420 Score = 28.9 bits (63), Expect = 3.2 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%) Frame = -1 Query: 141 ERMCSIYPGVS-NSSRRLHIVVLANAK 64 +RMC YP + NSSR+ HI++LA + Sbjct: 52 DRMCDEYPYFNYNSSRKTHILILATTR 78
>FAT1_SCHPO (O13735) Actin-interacting protein 3 homolog| Length = 1385 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = -1 Query: 240 SPEAPDSPSLQNF*LSFVHDDRQSPASSSKFERERMCSIYPGVSNSSR 97 +P + SPSL+ SFV D S ++S + + +++PG ++ +R Sbjct: 347 TPTSLKSPSLRKSPSSFVQKDVYSRSNSLRISQANRSNVFPGATDVTR 394
>VKOR1_BOVIN (Q6B4J2) Vitamin K epoxide reductase complex subunit 1 (EC 1.1.4.1)| (Vitamin K1 2,3-epoxide reductase subunit 1) Length = 163 Score = 28.9 bits (63), Expect = 3.2 Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 4/65 (6%) Frame = -2 Query: 203 SSSLLYMMTDRVLLAVANLKGK-ECVLSILASVILVAGCTLLCWLM---LKSCCIVCTCT 36 S+S+ + + L + L+G+ VL L+ ++ +AG L W++ L CIVC T Sbjct: 79 SNSIFGCIFYTLQLLLGCLQGRWASVLLRLSCLVSLAGSVYLAWILFFVLYDFCIVCITT 138 Query: 35 YTSSV 21 Y +V Sbjct: 139 YAINV 143
>TERT_TETTH (O77448) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) (Telomerase subunit P133) Length = 1117 Score = 28.9 bits (63), Expect = 3.2 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 6/56 (10%) Frame = +1 Query: 70 ISQHNNVQPATRITDARIDRTH------SFPFKFATASRTLSVIMYKRELEILQRG 219 I Q NN+ A I + +I++ +FP+ F R ++ +Y + +ILQ+G Sbjct: 663 IQQTNNLNSAMEIEEEKINKKPFKMDNINFPYYFNLKERQIAYSLYDDDDQILQKG 718
>VC03_SWPVK (P32229) G-protein coupled receptor homolog C3| Length = 269 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 2/53 (3%) Frame = -2 Query: 173 RVLLAVANLKGKECVLSILASVILVAGCTLLCWLMLKSCCIVCTCT--YTSSV 21 R+ V L+ + SI V+++ C+L+CW+ L ++ T YTS++ Sbjct: 146 RIFSTVVRLRNRRKYKSIKI-VLMIVVCSLICWIPLYIVLMIATIVSLYTSNI 197
>Y623_DROME (Q9VFB7) Hypothetical protein CG6623| Length = 1145 Score = 28.5 bits (62), Expect = 4.2 Identities = 12/35 (34%), Positives = 21/35 (60%) Frame = -1 Query: 165 ASSSKFERERMCSIYPGVSNSSRRLHIVVLANAKI 61 A +E ++C + PG + +S +LHIVV ++ I Sbjct: 378 AKDKLYELGKLCGLLPGCTPTSEQLHIVVQLSSGI 412
>YTX2_XENLA (P14381) Transposon TX1 hypothetical 149 kDa protein (ORF 2)| Length = 1308 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/27 (51%), Positives = 19/27 (70%), Gaps = 3/27 (11%) Frame = -1 Query: 252 KTKPSPEAPDSPS---LQNF*LSFVHD 181 KT+ SP+AP SP+ L+NF L+ HD Sbjct: 1057 KTRQSPQAPPSPNLSQLENFPLTRFHD 1083
>RT04_ARATH (Q31708) Mitochondrial ribosomal protein S4| Length = 362 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/34 (47%), Positives = 21/34 (61%) Frame = +1 Query: 142 PFKFATASRTLSVIMYKRELEILQRGAVRSLRRR 243 P +F T R LS ++ REL I+QR +R LR R Sbjct: 16 PLRFQTC-RLLSGNVWNRELTIIQRRILRRLRNR 48
>INSR_HUMAN (P06213) Insulin receptor precursor (EC 2.7.10.1) (IR) (CD220| antigen) [Contains: Insulin receptor alpha subunit; Insulin receptor beta subunit] Length = 1382 Score = 28.1 bits (61), Expect = 5.5 Identities = 24/89 (26%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Frame = +3 Query: 135 FFPFQICYC*QDSVCHHVQKRARNSATRGC-----------PE-PQETVLFSSFFSC--Y 272 ++ FQ C S C + + +NS +GC PE P + SS C Sbjct: 272 YYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPC 331 Query: 273 LGPDSSTARRLKVESTIQSLCRGASSASC 359 LGP L+ E TI S+ C Sbjct: 332 LGPCPKVCHLLEGEKTIDSVTSAQELRGC 360
>INSR_RAT (P15127) Insulin receptor precursor (EC 2.7.10.1) (IR) [Contains:| Insulin receptor alpha subunit; Insulin receptor beta subunit] Length = 1383 Score = 28.1 bits (61), Expect = 5.5 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Frame = +3 Query: 135 FFPFQICYC*QDSVCHHVQKRARNSATRGC-----------PE-PQETVLFSSFFSC--Y 272 ++ FQ C S C + + RNS GC PE P + SS C Sbjct: 271 YYHFQDWRCVNFSFCQDLHYKCRNSRKPGCHQYVIHNNKCIPECPSGYTMNSSNLMCTPC 330 Query: 273 LGPDSSTARRLKVESTIQSLCRGASSASC 359 LGP + L+ E TI S+ C Sbjct: 331 LGPCPKVCQILEGEKTIDSVTSAQELRGC 359
>CLCN7_RAT (P51799) Chloride channel protein 7 (ClC-7)| Length = 803 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 64 FSISQHNNVQPATRITDARIDRTHSFPFKFATASRTLSV 180 F I Q NNV+ + D +D H+FP + + LS+ Sbjct: 52 FRIGQMNNVELDDELLDPEVDPPHTFPKEIPHNEKLLSL 90
>CLCN7_MOUSE (O70496) Chloride channel protein 7 (ClC-7)| Length = 803 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/39 (33%), Positives = 20/39 (51%) Frame = +1 Query: 64 FSISQHNNVQPATRITDARIDRTHSFPFKFATASRTLSV 180 F I Q NNV+ + D +D H+FP + + LS+ Sbjct: 52 FRIGQMNNVELDDELLDPEVDPPHTFPKEIPHNEKLLSL 90
>INSR_MOUSE (P15208) Insulin receptor precursor (EC 2.7.10.1) (IR) [Contains:| Insulin receptor alpha subunit; Insulin receptor beta subunit] Length = 1372 Score = 27.7 bits (60), Expect = 7.1 Identities = 25/89 (28%), Positives = 33/89 (37%), Gaps = 14/89 (15%) Frame = +3 Query: 135 FFPFQICYC*QDSVCHHVQKRARNSATRGC-----------PE-PQETVLFSSFFSC--Y 272 ++ FQ C S C + + RNS GC PE P + SS C Sbjct: 272 YYHFQDWRCVNFSFCQDLHFKCRNSRKPGCHQYVIHNNKCIPECPSGYTMNSSNLMCTPC 331 Query: 273 LGPDSSTARRLKVESTIQSLCRGASSASC 359 LGP + L+ E TI S+ C Sbjct: 332 LGPCPKVCQILEGEKTIDSVTSAQELRGC 360
>KBTB4_MACFA (Q9N010) Kelch repeat and BTB domain-containing protein 4| Length = 543 Score = 27.7 bits (60), Expect = 7.1 Identities = 18/80 (22%), Positives = 34/80 (42%), Gaps = 6/80 (7%) Frame = -1 Query: 294 RWSCPARGNRKKMKKTKPSPEAPDSPSLQNF*LSFVHDDRQSPASSSK------FERERM 133 RW C A +++ + SPE P + +N+ +++ DR ++ E E Sbjct: 10 RWCCFADSWQREKLASMESPEEPGASMDENYFVNYTFKDRSHSGRVAQGTMKLCLEEELF 69 Query: 132 CSIYPGVSNSSRRLHIVVLA 73 + V +LH +VL+ Sbjct: 70 ADVTISVEGREFQLHRLVLS 89
>Y1137_METTH (O27209) Hypothetical protein MTH1137| Length = 505 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/32 (46%), Positives = 21/32 (65%) Frame = +2 Query: 263 FLLPRAGQLHRPEVESGVDDPVVVSRSQLRLL 358 F LPR ++ R EVESG+ PV + ++QL L Sbjct: 325 FGLPRVMKIMREEVESGL-TPVPIQKAQLEAL 355
>Y1127_AQUAE (O67204) Hypothetical protein aq_1127| Length = 122 Score = 27.3 bits (59), Expect = 9.3 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +3 Query: 177 CHHVQKRARNSATRGCPEPQETVLFSSFFSCYL 275 C+ Q + PE E V+FSSFF +L Sbjct: 88 CNRTQAKVYEGTYGKTPEENEKVIFSSFFPLFL 120
>GIDA_CHLCV (Q824M2) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 611 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = -1 Query: 180 DRQSPASSSKFERERMCSIYPGVSNSSRRLHIVVLANAKILLYCLYVHIH 31 D QS +S S RE++ P S+ R+ + A+ ++L+ + H H Sbjct: 561 DYQSISSLSLEAREKLAKFTPRTIGSASRISGIACADIQVLMVAVKKHAH 610
>GIDA_CHLAB (Q5L6Z0) tRNA uridine 5-carboxymethylaminomethyl modification| enzyme gidA (Glucose-inhibited division protein A) Length = 611 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/50 (28%), Positives = 25/50 (50%) Frame = -1 Query: 180 DRQSPASSSKFERERMCSIYPGVSNSSRRLHIVVLANAKILLYCLYVHIH 31 D QS +S S RE++ P S+ R+ + A+ ++L+ + H H Sbjct: 561 DYQSISSLSLEAREKLAKFTPRTIGSASRISGIACADIQVLMVAVKKHAH 610
>TERT_SCHPO (O13339) Telomerase reverse transcriptase (EC 2.7.7.49) (Telomerase| catalytic subunit) Length = 988 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/44 (29%), Positives = 23/44 (52%) Frame = -1 Query: 162 SSSKFERERMCSIYPGVSNSSRRLHIVVLANAKILLYCLYVHIH 31 S S +R+ +YP + +++RLH + L+ YC Y+ H Sbjct: 286 SQSTVVPKRLLKVYPLIEQTAKRLHRISLSKV-YNHYCPYIDTH 328
>LAR_DROME (P16621) Tyrosine-protein phosphatase Lar precursor (EC 3.1.3.48)| (Protein-tyrosine-phosphate phosphohydrolase) (dLAR) Length = 2029 Score = 27.3 bits (59), Expect = 9.3 Identities = 13/34 (38%), Positives = 20/34 (58%) Frame = +2 Query: 233 SGDGFVFFIFFLLPRAGQLHRPEVESGVDDPVVV 334 SG+GF+ FI GQ+H+ + + G D P+ V Sbjct: 1933 SGEGFIDFI-------GQVHKTKEQFGQDGPITV 1959 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 49,358,994 Number of Sequences: 219361 Number of extensions: 879250 Number of successful extensions: 2731 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 2674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2727 length of database: 80,573,946 effective HSP length: 98 effective length of database: 59,076,568 effective search space used: 1417837632 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
