ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62j24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|BT009426.1| Triticum aestivum clone wlmk1.pk0023.a8:fis, full... 200 2e-48
2ref|XM_472733.1| Oryza sativa (japonica cultivar-group), predic... 129 7e-27
3gb|AY652735.1| Oryza sativa (japonica cultivar-group) somatic em... 129 7e-27
4emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4,... 129 7e-27
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 129 7e-27
6dbj|AK099777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
7dbj|AK105892.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
8dbj|AK061767.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 7e-27
9emb|AJ277702.1|ZMA277702 Zea mays mRNA for SERK1 protein 111 2e-21
10emb|AJ400868.1|ZMA400868 Zea mays serk1 gene for somatic embryog... 111 2e-21
11emb|AJ277703.1|ZMA277703 Zea mays mRNA for SERK2 protein 64 3e-07
12emb|AJ400869.1|ZMA400869 Zea mays serk2 gene for somatic embryog... 64 3e-07
13gb|AY110115.1| Zea mays CL444_1 mRNA sequence 64 3e-07
14gb|BT009223.1| Triticum aestivum clone wle1n.pk0076.d4:fis, full... 60 5e-06
15dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
16dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
17gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete ge... 42 1.2
18gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome 40 4.9
19gb|AY524043.1| Micromonospora echinospora ATCC 15835 gentamicin ... 40 4.9
20emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in ... 40 4.9
21emb|AJ575934.2|MPU575934 Micromonospora purpurea DOS biosyntheti... 40 4.9
22gb|AC008896.6| Homo sapiens chromosome 5 clone CTD-2235B13, comp... 40 4.9
23emb|AJ628149.4| Micromonospora echinospora genomic region of the... 40 4.9
24gb|AC149587.5| Mus musculus BAC clone RP23-472J13 from 5, comple... 40 4.9 
>gb|BT009426.1| Triticum aestivum clone wlmk1.pk0023.a8:fis, full insert mRNA
            sequence
          Length = 2298

 Score =  200 bits (101), Expect = 2e-48
 Identities = 178/205 (86%), Gaps = 8/205 (3%)
 Strand = Plus / Minus

                                                                        
Query: 171  tctgtctgtcatcatgtacaaaagagagctagaaattctgcaacgaggggctgtccggag 230
            |||||| |||||||||||||||||||||||| |||||||| ||||||| |||| | ||||
Sbjct: 2116 tctgtcggtcatcatgtacaaaagagagctaaaaattctgaaacgaggcgctgcctggag 2057

                                                                        
Query: 231  cct------caggagacggttttgttttcttcannnnnnncctgttacctcgggccggac 284
            | |      ||||||||| ||||||||| |||        ||||||||||||||||||||
Sbjct: 2056 cttgtcgatcaggagacgattttgttttgttc--ttttttcctgttacctcgggccggac 1999

                                                                        
Query: 285  agctccaccgcccggaggttgaaagtggagtcgacgatccagtcgttgtgtcgcggagcc 344
            ||||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||
Sbjct: 1998 agctccaccgcccggaggttgtaggtggagtcgacgatccagtcgttgtttcgcggggcc 1939

                                     
Query: 345  agctccgcctcctgccggaccacct 369
            |||||||||||||||||||||||||
Sbjct: 1938 agctccgcctcctgccggaccacct 1914
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>ref|XM_472733.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1887

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                        
Query: 269  ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
            |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 1887 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 1828

                                                     
Query: 329  gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
            |||||| || || ||||||||||||||||||||||||||||
Sbjct: 1827 gttgtggcggggggccagctccgcctcctgccggaccacct 1787
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>gb|AY652735.1| Oryza sativa (japonica cultivar-group) somatic embryogenesis protein
            kinase 1 mRNA, complete cds
          Length = 2380

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                        
Query: 269  ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
            |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 2007 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 1948

                                                     
Query: 329  gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
            |||||| || || ||||||||||||||||||||||||||||
Sbjct: 1947 gttgtggcggggggccagctccgcctcctgccggaccacct 1907
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>emb|AL606636.4|OSJN00075 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0036B21,
             complete sequence
          Length = 138969

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Plus

                                                                         
Query: 269   ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
             |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 51112 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 51171

                                                      
Query: 329   gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
             |||||| || || ||||||||||||||||||||||||||||
Sbjct: 51172 gttgtggcggggggccagctccgcctcctgccggaccacct 51212
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Plus

                                                                            
Query: 269      ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
                |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 22842337 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 22842396

                                                         
Query: 329      gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
                |||||| || || ||||||||||||||||||||||||||||
Sbjct: 22842397 gttgtggcggggggccagctccgcctcctgccggaccacct 22842437
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>dbj|AK099777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013095F19, full
            insert sequence
          Length = 2296

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                        
Query: 269  ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
            |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 2089 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 2030

                                                     
Query: 329  gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
            |||||| || || ||||||||||||||||||||||||||||
Sbjct: 2029 gttgtggcggggggccagctccgcctcctgccggaccacct 1989
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>dbj|AK105892.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-204-E09, full
           insert sequence
          Length = 1161

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                       
Query: 269 ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
           |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 832 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 773

                                                    
Query: 329 gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
           |||||| || || ||||||||||||||||||||||||||||
Sbjct: 772 gttgtggcggggggccagctccgcctcctgccggaccacct 732
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>dbj|AK061767.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-B11, full
           insert sequence
          Length = 1161

 Score =  129 bits (65), Expect = 7e-27
 Identities = 92/101 (91%)
 Strand = Plus / Minus

                                                                       
Query: 269 ttacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtc 328
           |||||||||||||||||||||||  |||||||| ||| | || |||||||||||||||||
Sbjct: 832 ttacctcgggccggacagctccattgcccggagattgtaggtcgagtcgacgatccagtc 773

                                                    
Query: 329 gttgtgtcgcggagccagctccgcctcctgccggaccacct 369
           |||||| || || ||||||||||||||||||||||||||||
Sbjct: 772 gttgtggcggggggccagctccgcctcctgccggaccacct 732
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>emb|AJ277702.1|ZMA277702 Zea mays mRNA for SERK1 protein
          Length = 2068

 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                        
Query: 270  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 329
            ||||||||||||||||| || || |||| ||||||| | |||||||||||||||||||||
Sbjct: 1877 tacctcgggccggacagttcgacggccctgaggttgtaggtggagtcgacgatccagtcg 1818

                                            
Query: 330  ttgtgtcgcggagccagctccgcctcctgccg 361
            ||||| ||||| || |||||||||||||||||
Sbjct: 1817 ttgtggcgcggggcgagctccgcctcctgccg 1786
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>emb|AJ400868.1|ZMA400868 Zea mays serk1 gene for somatic embryogenesis receptor-like kinase 1,
            exons 1-11
          Length = 5715

 Score =  111 bits (56), Expect = 2e-21
 Identities = 83/92 (90%)
 Strand = Plus / Minus

                                                                        
Query: 270  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 329
            ||||||||||||||||| || || |||| ||||||| | |||||||||||||||||||||
Sbjct: 4993 tacctcgggccggacagttcgacggccctgaggttgtaggtggagtcgacgatccagtcg 4934

                                            
Query: 330  ttgtgtcgcggagccagctccgcctcctgccg 361
            ||||| ||||| || |||||||||||||||||
Sbjct: 4933 ttgtggcgcggggcgagctccgcctcctgccg 4902
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>emb|AJ277703.1|ZMA277703 Zea mays mRNA for SERK2 protein
          Length = 2077

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                        
Query: 270  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 329
            ||||| ||||||||||||||||| || || |||||| | ||||| |||||||||||||| 
Sbjct: 1886 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 1827

                                                    
Query: 330  ttgtgtcgcggagccagctccgcctcctgccggaccacct 369
            ||| |  |||| |||  ||| ||||||||||  |||||||
Sbjct: 1826 ttgcggagcggtgccgactcagcctcctgcctcaccacct 1787
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>emb|AJ400869.1|ZMA400869 Zea mays serk2 gene for somatic embryogenesis receptor-like kinase 2,
            exons 1-11
          Length = 5484

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                        
Query: 270  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 329
            ||||| ||||||||||||||||| || || |||||| | ||||| |||||||||||||| 
Sbjct: 5019 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 4960

                                                    
Query: 330  ttgtgtcgcggagccagctccgcctcctgccggaccacct 369
            ||| |  |||| |||  ||| ||||||||||  |||||||
Sbjct: 4959 ttgcggagcggtgccgactcagcctcctgcctcaccacct 4920
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>gb|AY110115.1| Zea mays CL444_1 mRNA sequence
          Length = 2474

 Score = 63.9 bits (32), Expect = 3e-07
 Identities = 83/100 (83%)
 Strand = Plus / Minus

                                                                        
Query: 270  tacctcgggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcg 329
            ||||| ||||||||||||||||| || || |||||| | ||||| |||||||||||||| 
Sbjct: 2114 taccttgggccggacagctccacggcacgaaggttgtacgtggaatcgacgatccagtca 2055

                                                    
Query: 330  ttgtgtcgcggagccagctccgcctcctgccggaccacct 369
            ||| |  |||| |||  ||| ||||||||||  |||||||
Sbjct: 2054 ttgcggagcggtgccgactcagcctcctgcctcaccacct 2015
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>gb|BT009223.1| Triticum aestivum clone wle1n.pk0076.d4:fis, full insert mRNA
            sequence
          Length = 1651

 Score = 60.0 bits (30), Expect = 5e-06
 Identities = 78/94 (82%)
 Strand = Plus / Minus

                                                                        
Query: 276  gggccggacagctccaccgcccggaggttgaaagtggagtcgacgatccagtcgttgtgt 335
            ||||| ||||| ||||| || ||||||||  | |||||||| || |||||||||||| | 
Sbjct: 1368 gggccagacagttccacggcgcggaggttatatgtggagtcaacaatccagtcgttgcga 1309

                                              
Query: 336  cgcggagccagctccgcctcctgccggaccacct 369
             | ||||||| ||| |||||||||| ||||||||
Sbjct: 1308 agaggagccaactctgcctcctgcctgaccacct 1275
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 349      ccgcctcctgccggaccacct 369
                |||||||||||||||||||||
Sbjct: 24942555 ccgcctcctgccggaccacct 24942575
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>dbj|AP006523.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:B1215B07
          Length = 165957

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 349    ccgcctcctgccggaccacct 369
              |||||||||||||||||||||
Sbjct: 103838 ccgcctcctgccggaccacct 103858
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>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome
          Length = 4751080

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 342     gccagctccgcctcctgccgg 362
               |||||||||||||||||||||
Sbjct: 4036418 gccagctccgcctcctgccgg 4036438
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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 340     gagccagctccgcctcctgccgga 363
               ||||||||||||| ||||||||||
Sbjct: 2284559 gagccagctccgcttcctgccgga 2284536
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>gb|AY524043.1| Micromonospora echinospora ATCC 15835 gentamicin biosynthesis gene
             cluster, complete sequence
          Length = 38146

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cagctccgcctcctgccgga 363
             ||||||||||||||||||||
Sbjct: 30386 cagctccgcctcctgccgga 30405
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>emb|BX649528.15| Zebrafish DNA sequence from clone DKEY-19F4 in linkage group 5, complete
              sequence
          Length = 205281

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 167    ggactctgtctgtcatcatg 186
              ||||||||||||||||||||
Sbjct: 169143 ggactctgtctgtcatcatg 169124
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>emb|AJ575934.2|MPU575934 Micromonospora purpurea DOS biosynthetic gene cluster
          Length = 32668

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 344  cagctccgcctcctgccgga 363
            ||||||||||||||||||||
Sbjct: 6107 cagctccgcctcctgccgga 6088
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>gb|AC008896.6| Homo sapiens chromosome 5 clone CTD-2235B13, complete sequence
          Length = 128624

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 197    agctagaaattctgcaacgagggg 220
              |||||||||||||| |||||||||
Sbjct: 101989 agctagaaattctgaaacgagggg 102012
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>emb|AJ628149.4| Micromonospora echinospora genomic region of the gentamicin
             biosynthesis gene cluster, strain DSM 43036
          Length = 84222

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 344   cagctccgcctcctgccgga 363
             ||||||||||||||||||||
Sbjct: 42630 cagctccgcctcctgccgga 42649
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>gb|AC149587.5| Mus musculus BAC clone RP23-472J13 from 5, complete sequence
          Length = 188522

 Score = 40.1 bits (20), Expect = 4.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 343   ccagctccgcctcctgccgg 362
             ||||||||||||||||||||
Sbjct: 92333 ccagctccgcctcctgccgg 92314


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,275,340
Number of Sequences: 3902068
Number of extensions: 3275340
Number of successful extensions: 74179
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 74070
Number of HSP's gapped (non-prelim): 109
length of query: 369
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 347
effective length of database: 17,147,199,772
effective search space: 5950078320884
effective search space used: 5950078320884
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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