ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62j15 |
|---|---|
| Clone Library Name | barley_pub |
>PMA1_WHEAT (P83970) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| Length = 951 Score = 166 bits (420), Expect = 5e-41 Identities = 84/85 (98%), Positives = 84/85 (98%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GKGEREAQWATAQRTLHGLQA EPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT Sbjct: 867 GKGEREAQWATAQRTLHGLQAPEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 926 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDIDTINQNYTV Sbjct: 927 LKGHVESVVKLKGLDIDTINQNYTV 951
>PMA4_NICPL (Q03194) Plasma membrane ATPase 4 (EC 3.6.3.6) (Proton pump 4)| Length = 952 Score = 132 bits (333), Expect = 6e-31 Identities = 69/85 (81%), Positives = 76/85 (89%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK EREAQWA AQRTLHGLQ P + LFN+K+SYRELSEIAEQAKRRAE+ARLREL+T Sbjct: 870 GKEEREAQWALAQRTLHGLQP--PEATNLFNEKNSYRELSEIAEQAKRRAEMARLRELHT 927 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 928 LKGHVESVVKLKGLDIETIQQHYTV 952
>PMA5_ARATH (Q9SJB3) ATPase 5, plasma membrane-type (EC 3.6.3.6) (Proton pump 5)| Length = 948 Score = 130 bits (328), Expect = 2e-30 Identities = 66/85 (77%), Positives = 74/85 (87%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK EREAQWA AQRTLHGLQ E + +FN+K+SY ELS+IAEQAKRRAE+ RLRE+NT Sbjct: 866 GKEEREAQWAAAQRTLHGLQPAE--KNNIFNEKNSYSELSQIAEQAKRRAEVVRLREINT 923 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 924 LKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA9_ARATH (Q42556) ATPase 9, plasma membrane-type (EC 3.6.3.6) (Proton pump 9)| Length = 954 Score = 127 bits (318), Expect = 3e-29 Identities = 64/85 (75%), Positives = 74/85 (87%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GKGEREAQWA AQRTLHGLQ + + +FNDKS+YRELSEIA+QAKRRAE+ARLRE +T Sbjct: 872 GKGEREAQWAQAQRTLHGLQPAQTSD--MFNDKSTYRELSEIADQAKRRAEVARLRERHT 929 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVK KGLDI+ I Q+YT+ Sbjct: 930 LKGHVESVVKQKGLDIEAIQQHYTL 954
>PMA1_ARATH (P20649) ATPase 1, plasma membrane-type (EC 3.6.3.6) (Proton pump 1)| Length = 948 Score = 125 bits (313), Expect = 1e-28 Identities = 66/85 (77%), Positives = 71/85 (83%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 G GEREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKRRAEIARLREL+T Sbjct: 866 GIGEREAQWAQAQRTLHGLQPKEDVN--IFPEKGSYRELSEIAEQAKRRAEIARLRELHT 923 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESV KLKGLDIDT +YTV Sbjct: 924 LKGHVESVAKLKGLDIDTAGHHYTV 948
>PMA6_ARATH (Q9SH76) ATPase 6, plasma membrane-type (EC 3.6.3.6) (Proton pump 6)| Length = 949 Score = 124 bits (310), Expect = 3e-28 Identities = 62/85 (72%), Positives = 74/85 (87%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 G+GEREAQWA AQRTLHGL+ E ++F D ++Y ELSEIAEQAK+RAE+ARLRE++T Sbjct: 869 GRGEREAQWALAQRTLHGLKPPE----SMFEDTATYTELSEIAEQAKKRAEVARLREVHT 924 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDID +NQ+YTV Sbjct: 925 LKGHVESVVKLKGLDIDNLNQHYTV 949
>PMA8_ARATH (Q9M2A0) ATPase 8, plasma membrane-type (EC 3.6.3.6) (Proton pump 8)| Length = 948 Score = 123 bits (309), Expect = 4e-28 Identities = 66/85 (77%), Positives = 71/85 (83%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GKGEREAQWA AQRTLHGL P +FND + ELSEIAEQAKRRAE+ARLREL+T Sbjct: 870 GKGEREAQWALAQRTLHGL----PPPEAMFNDNKN--ELSEIAEQAKRRAEVARLRELHT 923 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDIDTI Q+YTV Sbjct: 924 LKGHVESVVKLKGLDIDTIQQHYTV 948
>PMA2_ARATH (P19456) ATPase 2, plasma membrane-type (EC 3.6.3.6) (Proton pump 2)| Length = 947 Score = 120 bits (300), Expect = 4e-27 Identities = 66/85 (77%), Positives = 72/85 (84%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK EREAQWA AQRTLHGLQ E + +F +K SYRELSEIAEQAKRRAEIARLREL+T Sbjct: 866 GKEEREAQWALAQRTLHGLQPKEAVN--IFPEKGSYRELSEIAEQAKRRAEIARLRELHT 923 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+T +YTV Sbjct: 924 LKGHVESVVKLKGLDIET-PSHYTV 947
>PMA3_NICPL (Q08436) Plasma membrane ATPase 3 (EC 3.6.3.6) (Proton pump 3)| Length = 956 Score = 115 bits (288), Expect = 1e-25 Identities = 58/85 (68%), Positives = 72/85 (84%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK +RE QWA AQRTLHGLQ +P +F++ +++ EL+++AE+AKRRAEIARLREL+T Sbjct: 875 GKEQRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAKRRAEIARLRELHT 931 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+TI Q YTV Sbjct: 932 LKGHVESVVKLKGLDIETIQQAYTV 956
>PMA1_LYCES (P22180) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 956 Score = 114 bits (286), Expect = 2e-25 Identities = 58/85 (68%), Positives = 72/85 (84%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK RE QWA AQRTLHGLQ +P +F++ +++ EL+++AE+AKRRAEIARLREL+T Sbjct: 875 GKELRELQWAHAQRTLHGLQVPDPK---IFSETTNFNELNQLAEEAKRRAEIARLRELHT 931 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 932 LKGHVESVVKLKGLDIETIQQSYTV 956
>PMA1_NICPL (Q08435) Plasma membrane ATPase 1 (EC 3.6.3.6) (Proton pump 1)| Length = 957 Score = 113 bits (282), Expect = 5e-25 Identities = 58/85 (68%), Positives = 71/85 (83%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK +RE QWA AQRTLHGLQ + LF++ +++ EL+++AE+AKRRAEIARLREL+T Sbjct: 876 GKEQRELQWAHAQRTLHGLQVPDTK---LFSEATNFNELNQLAEEAKRRAEIARLRELHT 932 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+TI Q YTV Sbjct: 933 LKGHVESVVKLKGLDIETIQQAYTV 957
>PMA11_ARATH (Q9LV11) ATPase 11, plasma membrane-type (EC 3.6.3.6) (Proton pump| 11) Length = 956 Score = 112 bits (281), Expect = 7e-25 Identities = 58/85 (68%), Positives = 71/85 (83%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK +RE QWA AQRTLHGLQA + +F +++ + ELS++AE+AKRRAEIARLREL+T Sbjct: 875 GKEQRELQWAHAQRTLHGLQAPDAK---MFPERTHFNELSQMAEEAKRRAEIARLRELHT 931 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVV+LKGLDI+TI Q YTV Sbjct: 932 LKGHVESVVRLKGLDIETIQQAYTV 956
>PMA4_ARATH (Q9SU58) ATPase 4, plasma membrane-type (EC 3.6.3.6) (Proton pump 4)| Length = 960 Score = 112 bits (279), Expect = 1e-24 Identities = 58/85 (68%), Positives = 70/85 (82%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK +RE QWA AQRTLHGLQA + +F D++ EL+++AE+AKRRAEIARLREL+T Sbjct: 879 GKEQRELQWAHAQRTLHGLQAPDTK---MFTDRTHVSELNQMAEEAKRRAEIARLRELHT 935 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVV+LKGLDI+TI Q YTV Sbjct: 936 LKGHVESVVRLKGLDIETIQQAYTV 960
>PMA2_LYCES (P23980) Plasma membrane ATPase 2 (EC 3.6.3.6) (Proton pump 2)| (Fragment) Length = 704 Score = 111 bits (277), Expect = 2e-24 Identities = 57/85 (67%), Positives = 71/85 (83%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 GK +RE QWA AQRTLHGLQ + LF++ +++ EL+++AE+AKRRAEIAR REL+T Sbjct: 623 GKEQRELQWAHAQRTLHGLQVPDIK---LFSEATNFNELNQLAEEAKRRAEIARQRELHT 679 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+TI Q+YTV Sbjct: 680 LKGHVESVVKLKGLDIETIQQSYTV 704
>PMA3_ARATH (P20431) ATPase 3, plasma membrane-type (EC 3.6.3.6) (Proton pump 3)| Length = 948 Score = 110 bits (276), Expect = 2e-24 Identities = 62/85 (72%), Positives = 69/85 (81%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 G EREAQWA AQRTLHGLQ E A+ + ++ YRELSEIA QAKRRAEIARLREL+T Sbjct: 867 GIEEREAQWAHAQRTLHGLQNTETAN--VVPERGGYRELSEIANQAKRRAEIARLRELHT 924 Query: 432 LKGHVESVVKLKGLDIDTINQNYTV 358 LKGHVESVVKLKGLDI+T +YTV Sbjct: 925 LKGHVESVVKLKGLDIETAG-HYTV 948
>PMA7_ARATH (Q9LY32) ATPase 7, plasma membrane-type (EC 3.6.3.6) (Proton pump 7)| Length = 961 Score = 82.4 bits (202), Expect = 9e-16 Identities = 45/86 (52%), Positives = 60/86 (69%), Gaps = 1/86 (1%) Frame = -2 Query: 612 GKGEREAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNT 433 G+ ER A WAT +RT HGL+ + + +++S EL+ +AE+AKRRAEIAR+REL T Sbjct: 880 GQEERMAAWATEKRTQHGLETGQKPVY----ERNSATELNNMAEEAKRRAEIARMRELQT 935 Query: 432 LKGHVESVVKLKGLDIDTIN-QNYTV 358 LKG VES KLKG D++ N NYT+ Sbjct: 936 LKGKVESAAKLKGYDLEDPNSNNYTI 961
>PMA10_ARATH (Q43128) ATPase 10, plasma membrane-type (EC 3.6.3.6) (Proton pump| 10) Length = 947 Score = 48.9 bits (115), Expect = 1e-05 Identities = 26/53 (49%), Positives = 36/53 (67%) Frame = -2 Query: 516 KSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVVKLKGLDIDTINQNYTV 358 + S S IAEQ +RRAEIARL E++++ H+ESV+KLK +D I +TV Sbjct: 895 RGSRSRASWIAEQTRRRAEIARLLEVHSVSRHLESVIKLKQIDQRMIRAAHTV 947
>PMA_AVESA (Q7M290) Plasma membrane ATPase (EC 3.6.3.6) (Proton pump)| (Fragments) Length = 110 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/38 (65%), Positives = 26/38 (68%) Frame = -2 Query: 585 ATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAK 472 A A +TLHGLQA E S L NDK ELSEIAEQAK Sbjct: 77 APALKTLHGLQAPESTSLNLPNDK----ELSEIAEQAK 110
>CING_HUMAN (Q9P2M7) Cingulin| Length = 1197 Score = 40.0 bits (92), Expect = 0.005 Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 3/81 (3%) Frame = -2 Query: 597 EAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 427 E Q Q L +Q EPA L D REL E + K+R E R REL LK Sbjct: 436 ETQVMELQNKLKHVQGPEPAKEVLLKDLLETRELLEEVLEGKQRVEEQLRLRERELTALK 495 Query: 426 GHVESVVKLKGLDIDTINQNY 364 G ++ V + +++ + Q Y Sbjct: 496 GALKEEVASRDQEVEHVRQQY 516
>CING_MOUSE (P59242) Cingulin| Length = 1191 Score = 30.4 bits (67), Expect = 4.2 Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 3/81 (3%) Frame = -2 Query: 597 EAQWATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAE---IARLRELNTLK 427 EAQ Q L Q+ + +L D REL E + K+R E R REL LK Sbjct: 430 EAQVKELQLKLKHSQSPDSGKESLLKDLLDTRELLEELLEGKQRVEEQLRLRERELTALK 489 Query: 426 GHVESVVKLKGLDIDTINQNY 364 G ++ V +++ + Y Sbjct: 490 GALKEEVASHDQEVEHVRLQY 510
>ASPP2_HUMAN (Q13625) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53-binding protein 2) (p53BP2) (53BP2) (Bcl2-binding protein) (Bbp) (NY-REN-51 antigen) Length = 1128 Score = 30.0 bits (66), Expect = 5.6 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 585 ATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 406 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 150 ATKEQRLKFLKQQDQRQQQQVAEQEKLKRLKEIAENQE-----AKLKKVRALKGHVEQKR 204 Query: 405 KLKGLDIDTINQ 370 G ++ I Q Sbjct: 205 LSNGKLVEEIEQ 216
>SMG_DROME (Q23972) Protein Smaug| Length = 999 Score = 30.0 bits (66), Expect = 5.6 Identities = 12/26 (46%), Positives = 18/26 (69%) Frame = -1 Query: 373 PKLHRVRNLGIGPNNMTSVLERDWNG 296 PK+H V+ G+GPNN ++ + WNG Sbjct: 769 PKMHHVKPAGVGPNN-GNINKPRWNG 793
>TIM_MOUSE (Q9R1X4) Timeless homolog (mTim)| Length = 1197 Score = 29.6 bits (65), Expect = 7.2 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 5/47 (10%) Frame = -1 Query: 415 VRGEAQGP*HRHHQPKLH-----RVRNLGIGPNNMTSVLERDWNGAP 290 V GE QGP H L R R G+GP + E +WN AP Sbjct: 1112 VPGE-QGPSEEHRTEALRALLSARKRKAGLGPTEEEATGEEEWNSAP 1157
>ASPP2_MOUSE (Q8CG79) Apoptosis-stimulating of p53 protein 2 (Tumor suppressor| p53-binding protein 2) (p53BP2) (53BP2) (Fragment) Length = 1088 Score = 29.3 bits (64), Expect = 9.5 Identities = 20/72 (27%), Positives = 34/72 (47%) Frame = -2 Query: 585 ATAQRTLHGLQALEPASHTLFNDKSSYRELSEIAEQAKRRAEIARLRELNTLKGHVESVV 406 AT ++ L L+ + ++ + L EIAE + A+L+++ LKGHVE Sbjct: 110 ATKEQRLKFLKQQDQRQQQQAAEQEKLKRLREIAESQE-----AKLKKVRALKGHVEQKR 164 Query: 405 KLKGLDIDTINQ 370 G ++ I Q Sbjct: 165 LSNGKLVEEIEQ 176 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 89,735,931 Number of Sequences: 219361 Number of extensions: 1835875 Number of successful extensions: 4543 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 4414 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4525 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5481822624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
