ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62j10 |
|---|---|
| Clone Library Name | barley_pub |
>PYRG_PSESM (Q886M5) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 543 Score = 31.2 bits (69), Expect = 2.0 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 54 QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 200 Q+ ++GAR L+ L L+P++A+ +TK T+H ++ I LQ Sbjct: 158 QLRFEVGARRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203
>HNF4A_HUMAN (P41235) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 31.2 bits (69), Expect = 2.0 Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 9/68 (13%) Frame = -1 Query: 496 HYMMQH------VSNNMPEQLPNGML---PRQLGGAGSLGVGYDQQATPRYSQPSTPPSY 344 H M +H V+N MP L NG + PR G Q ATP QPS P Sbjct: 383 HLMQEHMGTNVIVANTMPTHLSNGQMCEWPRPRG----------QAATPETPQPSPP--- 429 Query: 343 GAVGGNPF 320 G G P+ Sbjct: 430 GGSGSEPY 437
>PYRG_PSEAE (Q9HXZ4) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 542 Score = 30.8 bits (68), Expect = 2.6 Identities = 16/49 (32%), Positives = 28/49 (57%) Frame = +3 Query: 54 QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 200 Q+ +IGA+ L+ L L+P++A+ +TK T+H ++ I LQ Sbjct: 158 QLRVEIGAKRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203
>HNF4A_RAT (P22449) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Frame = -1 Query: 496 HYMMQH------VSNNMPEQLPNGML---PRQLGGAGSLGVGYDQQATPRYSQPSTPPSY 344 H M +H V+N MP L NG + PR G Q ATP QPS P Sbjct: 383 HLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRG----------QAATPETPQPSPPSGS 432 Query: 343 GA 338 G+ Sbjct: 433 GS 434
>HNF4A_MOUSE (P49698) Hepatocyte nuclear factor 4-alpha (HNF-4-alpha)| (Transcription factor HNF-4) (Transcription factor 14) Length = 465 Score = 30.8 bits (68), Expect = 2.6 Identities = 22/62 (35%), Positives = 26/62 (41%), Gaps = 9/62 (14%) Frame = -1 Query: 496 HYMMQH------VSNNMPEQLPNGML---PRQLGGAGSLGVGYDQQATPRYSQPSTPPSY 344 H M +H V+N MP L NG + PR G Q ATP QPS P Sbjct: 383 HLMQEHMGTNVIVANTMPSHLSNGQMCEWPRPRG----------QAATPETPQPSPPSGS 432 Query: 343 GA 338 G+ Sbjct: 433 GS 434
>TRPM6_HUMAN (Q9BX84) Transient receptor potential cation channel subfamily M| member 6 (EC 2.7.11.1) (Channel kinase 2) (Melastatin-related TRP cation channel 6) Length = 2022 Score = 30.4 bits (67), Expect = 3.4 Identities = 28/106 (26%), Positives = 40/106 (37%), Gaps = 6/106 (5%) Frame = +3 Query: 36 HTEHQTQIYKKIGARSTELLLLKLMPHVASTSQT--KLHGATVTEHMTSNMKQIFLQGFV 209 HT H I + LL L L + +HG M S K+IF QG V Sbjct: 105 HTHHAKYIRTSYDTKLDHLLHLMLKEWKMELPKLVISVHGGIQNFTMPSKFKEIFSQGLV 164 Query: 210 HSG-LTGQWALHTSGLKIHKIP*TGNMVR---PHLISLFYPKGFPP 335 + TG W + T G+ G+ ++ H + + G PP Sbjct: 165 KAAETTGAWII-TEGINTGVSKHVGDALKSHSSHSLRKIWTVGIPP 209
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 29.6 bits (65), Expect = 5.9 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 3/62 (4%) Frame = +3 Query: 270 P*TGNMVRPHLISLFYPKGFPPTAPYEGGVLGWEYLGVAC*SYPTP---REPAPPSCLGS 440 P G M P + YP G PP P Y YP P R PAPPS G Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPPP-------RYPSAGPGMYPPPPPSRPPAPPSGHGM 380 Query: 441 MP 446 +P Sbjct: 381 IP 382
>URE1_NOCFA (Q5YWR8) Urease alpha subunit (EC 3.5.1.5) (Urea amidohydrolase| alpha subunit) Length = 573 Score = 29.6 bits (65), Expect = 5.9 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 1/51 (1%) Frame = +3 Query: 324 GFPPTAPYEGGVLGWEYLGVAC*SYPTPREPAPPSCLG-SMPLGSCSGMLF 473 G P A +GG + W +G A S PTP+ P G + P+ + + + F Sbjct: 447 GVRPHAVLKGGAIAWAAMGDANASIPTPQPVLPRPMFGAAAPVAAATSLHF 497
>MSB1_YEAST (P21339) Morphogenesis-related protein MSB1 (Multicopy suppressor of| bud emergence 1) Length = 1137 Score = 29.3 bits (64), Expect = 7.7 Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 3/47 (6%) Frame = -1 Query: 475 SNNMPEQLPNGMLPRQLGGAGSLGVGYDQQATPRYS---QPSTPPSY 344 SNN P+ +P G+ P Q Y QQ RYS QP P Y Sbjct: 1009 SNNPPQMVPKGVRPNQ----------YPQQHVNRYSPQAQPVVPAEY 1045
>PYRG_PSEPK (Q88MG1) CTP synthase (EC 6.3.4.2) (UTP--ammonia ligase) (CTP| synthetase) Length = 542 Score = 29.3 bits (64), Expect = 7.7 Identities = 14/49 (28%), Positives = 28/49 (57%) Frame = +3 Query: 54 QIYKKIGARSTELLLLKLMPHVASTSQTKLHGATVTEHMTSNMKQIFLQ 200 Q+ ++G++ L+ L L+P++A+ +TK T+H ++ I LQ Sbjct: 158 QLRVEVGSKRAMLMHLTLVPYIATAGETK---TKPTQHSVKELRSIGLQ 203
>ROBO4_MOUSE (Q8C310) Roundabout homolog 4 precursor| Length = 1012 Score = 29.3 bits (64), Expect = 7.7 Identities = 10/23 (43%), Positives = 16/23 (69%) Frame = +3 Query: 399 PTPREPAPPSCLGSMPLGSCSGM 467 P PR P+PP+ G + + +CSG+ Sbjct: 826 PMPRAPSPPTTYGYISIPTCSGL 848
>PIN2_ORYSA (Q651V6) Probable auxin efflux carrier component 2 (OsPIN2)| Length = 630 Score = 28.9 bits (63), Expect = 10.0 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%) Frame = -1 Query: 505 HQNHYMMQHVSNNMPEQLPNGMLPRQLGGAGSLGVGYDQQATPRYS--QPSTPPSYGA 338 +Q + + M Q+ + M Q GGAG G D+Q T +++ + + PPSY A Sbjct: 274 NQADFYAMFSGSKMASQMASPMA--QHGGAGGRAQGLDEQVTNKFASGKAADPPSYPA 329 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,693,651 Number of Sequences: 219361 Number of extensions: 1909641 Number of successful extensions: 4909 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 4674 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4906 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4430660157 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
