ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62j10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464580.1| Oryza sativa (japonica cultivar-group), mRNA 125 2e-25
2dbj|AK121183.1| Oryza sativa (japonica cultivar-group) cDNA clon... 125 2e-25
3emb|AJ575233.1|OSA575233 Oryza sativa (japonica cultivar-group) ... 107 4e-20
4dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
5dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
6dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic D... 92 2e-15
7ref|XM_676129.1| Aspergillus nidulans FGSC A4 hypothetical prote... 42 1.9
8emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J... 42 1.9
9gb|AF231708.1|AF231708 Oncorhynchus mykiss vitelline envelope pr... 42 1.9
10dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
11dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
12ref|XM_632069.1| Dictyostelium discoideum hypothetical protein (... 40 7.5
13gb|BC058057.1| Danio rerio mediator of RNA polymerase II transcr... 40 7.5
14gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K1... 40 7.5
15ref|NM_214766.1| Danio rerio mediator of RNA polymerase II trans... 40 7.5
16gb|BT016495.1| Zea mays clone Contig328 mRNA sequence 40 7.5
17gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence 40 7.5
18gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome... 40 7.5
19gb|AC079815.9| Trypanosoma brucei chromosome 4 clone RPCI93-3M17... 40 7.5
20gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence 40 7.5
21gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genom... 40 7.5
22gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 7.5
23gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome... 40 7.5
24gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosom... 40 7.5
25gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome ... 40 7.5
26emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in... 40 7.5
27gb|AC015983.7| Homo sapiens BAC clone RP11-560I19 from 7, comple... 40 7.5
28gb|AC101811.3| Mus musculus chromosome 19, clone RP24-295O9, com... 40 7.5
29gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, com... 40 7.5
30gb|AC162444.2| Mus musculus chromosome 19, clone RP24-75M1, comp... 40 7.5
31emb|AL451048.13| Human DNA sequence from clone RP11-298A8 on chr... 40 7.5
32emb|AL136169.6| Human DNA sequence from clone RP4-809E13 on chro... 40 7.5
33gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's ... 40 7.5
34emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chro... 40 7.5
35emb|AL731726.11| Mouse DNA sequence from clone RP23-97P13 on chr... 40 7.5
36gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer ... 40 7.5
37gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, com... 40 7.5
38gb|AC069359.5| Homo sapiens chromosome 8, clone CTD-2003P13, com... 40 7.5
39gb|AC010321.8| Homo sapiens chromosome 16 clone CTD-2540M10, com... 40 7.5
40gb|AC161538.7| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer... 40 7.5
41gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cance... 40 7.5
42gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p... 40 7.5
43dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 7.5
44gb|AC109347.3| Homo sapiens BAC clone RP11-73K9 from 4, complete... 40 7.5
45gb|AC157911.5| Mus musculus chromosome 19, clone RP24-192F3, com... 40 7.5
46gb|AC008938.9| Homo sapiens chromosome 16 clone CTD-2313J23, com... 40 7.5
47gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complet... 40 7.5
48gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3... 40 7.5
49gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosom... 40 7.5
50emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chrom... 40 7.5
51dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Gloss... 40 7.5
52emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chro... 40 7.5
53emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chro... 40 7.5 
>ref|XM_464580.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2963

 Score =  125 bits (63), Expect = 2e-25
 Identities = 185/225 (82%), Gaps = 3/225 (1%)
 Strand = Plus / Minus

                                                                        
Query: 314  ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 373
            |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 2418 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 2359

                                                                        
Query: 374  cctaggggtagcttgttgatcatatccgacgccgagggaaccagcccctcctagttgcct 433
            ||| || | ||||||||||||| | || | |  |||||||||    |||||| ||||| |
Sbjct: 2358 cctgggagcagcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcat 2299

                                                                        
Query: 434  tggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgta 493
            ||||||||||  |||||||| |||||||| ||   |||||| ||| ||||||||||||||
Sbjct: 2298 tggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgta 2242

                                                         
Query: 494  atggttttgatgtacaggtggctgaatcatctgctgaggctgctg 538
            ||| ||| || || |||||| |||   || ||||||||| |||||
Sbjct: 2241 atgatttggaggtgcaggtgactggtacagctgctgaggttgctg 2197
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>dbj|AK121183.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023084M01, full
            insert sequence
          Length = 2961

 Score =  125 bits (63), Expect = 2e-25
 Identities = 185/225 (82%), Gaps = 3/225 (1%)
 Strand = Plus / Minus

                                                                        
Query: 314  ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 373
            |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 2416 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 2357

                                                                        
Query: 374  cctaggggtagcttgttgatcatatccgacgccgagggaaccagcccctcctagttgcct 433
            ||| || | ||||||||||||| | || | |  |||||||||    |||||| ||||| |
Sbjct: 2356 cctgggagcagcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcat 2297

                                                                        
Query: 434  tggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgta 493
            ||||||||||  |||||||| |||||||| ||   |||||| ||| ||||||||||||||
Sbjct: 2296 tggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgta 2240

                                                         
Query: 494  atggttttgatgtacaggtggctgaatcatctgctgaggctgctg 538
            ||| ||| || || |||||| |||   || ||||||||| |||||
Sbjct: 2239 atgatttggaggtgcaggtgactggtacagctgctgaggttgctg 2195
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>emb|AJ575233.1|OSA575233 Oryza sativa (japonica cultivar-group) partial mRNA for ZIGA2
           protein
          Length = 390

 Score =  107 bits (54), Expect = 4e-20
 Identities = 176/216 (81%), Gaps = 3/216 (1%)
 Strand = Plus / Minus

                                                                       
Query: 323 aggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagtacctaggggt 382
           ||||||||| || ||||  ||||| |||||||||||||||||||||| |||||| || | 
Sbjct: 390 aggatttcccccaacagagccataggaaggtggggtgcttggctgggggtacctgggagc 331

                                                                       
Query: 383 agcttgttgatcatatccgacgccgagggaaccagcccctcctagttgccttggaagcat 442
           ||||||||||||| | || | |  |||||||||    |||||| ||||| ||||||||||
Sbjct: 330 agcttgttgatcaaagcccatgttgagggaacccaaacctccttgttgcattggaagcat 271

                                                                       
Query: 443 gccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgtaatggttttg 502
           |  |||||||| |||||||| ||   |||||| ||| ||||||||||||||||| ||| |
Sbjct: 270 ggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgtaatgatttgg 214

                                               
Query: 503 atgtacaggtggctgaatcatctgctgaggctgctg 538
           | || |||||| |||   || ||||||||| |||||
Sbjct: 213 aggtgcaggtgactggtacagctgctgaggttgctg 178
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                           
Query: 314     ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 373
               |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 6117264 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 6117205

                                     
Query: 374     cctaggggtagcttgttgatca 395
               ||| || | |||||||||||||
Sbjct: 6117204 cctgggagcagcttgttgatca 6117183



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/64 (85%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                           
Query: 433     ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 492
               |||||||||||  |||||||| |||||||| ||   |||||| ||| |||||||||||||
Sbjct: 6116647 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 6116591

                   
Query: 493     aatg 496
               ||||
Sbjct: 6116590 aatg 6116587
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>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1006_A02
          Length = 175153

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                         
Query: 314   ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 373
             |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 82746 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 82687

                                   
Query: 374   cctaggggtagcttgttgatca 395
             ||| || | |||||||||||||
Sbjct: 82686 cctgggagcagcttgttgatca 82665



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/64 (85%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                         
Query: 433   ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 492
             |||||||||||  |||||||| |||||||| ||   |||||| ||| |||||||||||||
Sbjct: 82129 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 82073

                 
Query: 493   aatg 496
             ||||
Sbjct: 82072 aatg 82069
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>dbj|AP003974.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1003_F05
          Length = 147472

 Score = 91.7 bits (46), Expect = 2e-15
 Identities = 73/82 (89%)
 Strand = Plus / Minus

                                                                          
Query: 314    ttacccaaaaggatttccaccgacagcaccatatgaaggtggggtgcttggctgggagta 373
              |||||||||||||||||| || ||||  ||||| |||||||||||||||||||||| |||
Sbjct: 138103 ttacccaaaaggatttcccccaacagagccataggaaggtggggtgcttggctgggggta 138044

                                    
Query: 374    cctaggggtagcttgttgatca 395
              ||| || | |||||||||||||
Sbjct: 138043 cctgggagcagcttgttgatca 138022



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 55/64 (85%), Gaps = 3/64 (4%)
 Strand = Plus / Minus

                                                                          
Query: 433    ttggaagcatgccattaggtagctgctcaggcatgttgtttgaaacatgctgcatcatgt 492
              |||||||||||  |||||||| |||||||| ||   |||||| ||| |||||||||||||
Sbjct: 137486 ttggaagcatggtattaggtaactgctcagaca---tgtttggaacttgctgcatcatgt 137430

                  
Query: 493    aatg 496
              ||||
Sbjct: 137429 aatg 137426
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>ref|XM_676129.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN7952.2), mRNA
          Length = 2985

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 119  tgcttccacctcccagaccaa 139
            |||||||||||||||||||||
Sbjct: 1063 tgcttccacctcccagaccaa 1043
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>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3
             Contains part of the TNR gene for tenascin R (restrictin,
             janusin), a novel gene and one CpG island, complete
             sequence
          Length = 138636

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 189   atttttctccagggctttgtg 209
             |||||||||||||||||||||
Sbjct: 20262 atttttctccagggctttgtg 20282
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>gb|AF231708.1|AF231708 Oncorhynchus mykiss vitelline envelope protein gamma mRNA, complete
           cds
          Length = 1397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 524 ctgctgaggctgctgaggtgg 544
           |||||||||||||||||||||
Sbjct: 165 ctgctgaggctgctgaggtgg 145
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 506      tacaggtggctgaatcatctg 526
                |||||||||||||||||||||
Sbjct: 24007879 tacaggtggctgaatcatctg 24007899
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>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 506   tacaggtggctgaatcatctg 526
             |||||||||||||||||||||
Sbjct: 49487 tacaggtggctgaatcatctg 49507
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>ref|XM_632069.1| Dictyostelium discoideum hypothetical protein (DDB0219237), partial
            mRNA
          Length = 4827

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 486  atcatgtaatggttttgatg 505
            ||||||||||||||||||||
Sbjct: 2415 atcatgtaatggttttgatg 2434
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>gb|BC058057.1| Danio rerio mediator of RNA polymerase II transcription, subunit 25
            homolog (yeast), mRNA (cDNA clone MGC:63555
            IMAGE:3817335), complete cds
          Length = 2737

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 524  ctgctgaggctgctgaggtggaac 547
            |||||| |||||||||||||||||
Sbjct: 1241 ctgctgtggctgctgaggtggaac 1218
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>gb|AC159404.1| Trypanosoma brucei chromosome 8 clone RPCI93-10K10, complete sequence
          Length = 182660

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   tgctgcatcatgtaatggtt 499
             ||||||||||||||||||||
Sbjct: 17976 tgctgcatcatgtaatggtt 17957
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>ref|NM_214766.1| Danio rerio mediator of RNA polymerase II transcription, subunit 25
            homolog (yeast) (med25), mRNA
          Length = 2737

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 524  ctgctgaggctgctgaggtggaac 547
            |||||| |||||||||||||||||
Sbjct: 1241 ctgctgtggctgctgaggtggaac 1218
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>gb|BT016495.1| Zea mays clone Contig328 mRNA sequence
          Length = 1381

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 345 tatgaaggtggggtgcttggctgg 368
           ||||||||||||||| ||||||||
Sbjct: 932 tatgaaggtggggtgtttggctgg 909
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>gb|CP000067.1| Trypanosoma brucei chromosome 4, complete sequence
          Length = 1590432

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 480     tgctgcatcatgtaatggtt 499
               ||||||||||||||||||||
Sbjct: 1367952 tgctgcatcatgtaatggtt 1367933
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>gb|AC120535.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0092N01,
              complete sequence
          Length = 161741

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     cacaaatatacaagaaaata 71
              ||||||||||||||||||||
Sbjct: 138339 cacaaatatacaagaaaata 138358
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>gb|AC079815.9| Trypanosoma brucei chromosome 4 clone RPCI93-3M17, complete sequence
          Length = 144365

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 480   tgctgcatcatgtaatggtt 499
             ||||||||||||||||||||
Sbjct: 45839 tgctgcatcatgtaatggtt 45820
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>gb|CP000071.1| Trypanosoma brucei chromosome 8, complete sequence
          Length = 2481190

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 480     tgctgcatcatgtaatggtt 499
               ||||||||||||||||||||
Sbjct: 2140209 tgctgcatcatgtaatggtt 2140228
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>gb|AC138004.3| Oryza sativa chromosome 3 BAC OSJNBb0023J24 genomic sequence, complete
             sequence
          Length = 130193

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    cacaaatatacaagaaaata 71
             ||||||||||||||||||||
Sbjct: 60436 cacaaatatacaagaaaata 60417
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       cacaaatatacaagaaaata 71
                ||||||||||||||||||||
Sbjct: 25242272 cacaaatatacaagaaaata 25242291
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>gb|AC162936.3| Mus musculus BAC clone RP23-108K5 from chromosome 14, complete sequence
          Length = 236917

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     caaacacaaatatacaagaa 67
              ||||||||||||||||||||
Sbjct: 130247 caaacacaaatatacaagaa 130266
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>gb|AC123860.4| Mus musculus BAC clone RP23-349N13 from chromosome 14, complete sequence
          Length = 191104

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 493    aatggttttgatgtacaggt 512
              ||||||||||||||||||||
Sbjct: 182297 aatggttttgatgtacaggt 182316
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>gb|AC122903.4| Mus musculus BAC clone RP23-44N5 from chromosome 1, complete sequence
          Length = 169832

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   agctgctcaggcatgttgtt 472
             ||||||||||||||||||||
Sbjct: 96845 agctgctcaggcatgttgtt 96826
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>emb|CR391904.14| Zebrafish DNA sequence from clone DKEY-165J6 in linkage group 3,
             complete sequence
          Length = 147391

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 524   ctgctgaggctgctgaggtggaac 547
             |||||| |||||||||||||||||
Sbjct: 33168 ctgctgtggctgctgaggtggaac 33145
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>gb|AC015983.7| Homo sapiens BAC clone RP11-560I19 from 7, complete sequence
          Length = 177476

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 75     gctagaagcaccgaactact 94
              ||||||||||||||||||||
Sbjct: 168312 gctagaagcaccgaactact 168293
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>gb|AC101811.3| Mus musculus chromosome 19, clone RP24-295O9, complete sequence
          Length = 146963

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    agaacaccaaacacaaatat 60
             ||||||||||||||||||||
Sbjct: 58489 agaacaccaaacacaaatat 58470
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>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence
          Length = 213683

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 198   cagggctttgtgcattctgg 217
             ||||||||||||||||||||
Sbjct: 75708 cagggctttgtgcattctgg 75727
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>gb|AC162444.2| Mus musculus chromosome 19, clone RP24-75M1, complete sequence
          Length = 197112

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 41    agaacaccaaacacaaatat 60
             ||||||||||||||||||||
Sbjct: 25664 agaacaccaaacacaaatat 25683
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>emb|AL451048.13| Human DNA sequence from clone RP11-298A8 on chromosome Xq26.3-27.3
             Contains the gene for a novel protein similar to SPANX
             family member B1 (SPANXB1) and a novel gene, complete
             sequence
          Length = 99793

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    caaacacaaatatacaagaaaata 71
             |||||| |||||||||||||||||
Sbjct: 66692 caaacaaaaatatacaagaaaata 66715
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>emb|AL136169.6| Human DNA sequence from clone RP4-809E13 on chromosome Xq26.1-27.1
             Contains the CXX1 gene for CAAX box 1, two CAAX box 1
             (CXX1) pseudogenes and three CpG islands, complete
             sequence
          Length = 67201

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 38    tacagaacaccaaacacaaa 57
             ||||||||||||||||||||
Sbjct: 38758 tacagaacaccaaacacaaa 38739
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>gb|AC096310.9| Rattus norvegicus 1 BAC CH230-121B19 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 218258

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   aatatgaaacaaatttttct 196
             ||||||||||||||||||||
Sbjct: 32814 aatatgaaacaaatttttct 32795
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>emb|AL844147.9| Mouse DNA sequence from clone RP23-145N4 on chromosome 11 Contains a
             novel gene, the 3' end of the Acyp2 gene for muscle type
             acylphosphatase 2 and a proteasome (prosome, macropain)
             non-ATPase 26S subunit14 (Psmd14) pseudogene, complete
             sequence
          Length = 228444

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 527   ctgaggctgctgaggtggaa 546
             ||||||||||||||||||||
Sbjct: 89623 ctgaggctgctgaggtggaa 89604
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>emb|AL731726.11| Mouse DNA sequence from clone RP23-97P13 on chromosome 11 Contains a
            novel gene and a CpG island, complete sequence
          Length = 47745

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  tccagggctttgtgcattct 215
            ||||||||||||||||||||
Sbjct: 6685 tccagggctttgtgcattct 6666
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>gb|AC117392.4| Homo sapiens 3 BAC RP11-6F2 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 147520

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 55     aaatatacaagaaaataggg 74
              ||||||||||||||||||||
Sbjct: 107141 aaatatacaagaaaataggg 107122
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>gb|AC110025.4| Homo sapiens chromosome 8, clone CTD-2294G15, complete sequence
          Length = 108074

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   atatgaaacaaatttttctc 197
             ||||||||||||||||||||
Sbjct: 97295 atatgaaacaaatttttctc 97314
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>gb|AC069359.5| Homo sapiens chromosome 8, clone CTD-2003P13, complete sequence
          Length = 86991

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 178   atatgaaacaaatttttctc 197
             ||||||||||||||||||||
Sbjct: 26971 atatgaaacaaatttttctc 26990
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>gb|AC010321.8| Homo sapiens chromosome 16 clone CTD-2540M10, complete sequence
          Length = 207256

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 41     agaacaccaaacacaaatatacaa 64
              ||||||| ||||||||||||||||
Sbjct: 196518 agaacacaaaacacaaatatacaa 196495
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>gb|AC161538.7| Mus musculus 6 BAC RP23-1D15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 211933

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 336   acagcaccatatgaaggtggggtg 359
             ||||||||||||||||| ||||||
Sbjct: 41138 acagcaccatatgaaggcggggtg 41161
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>gb|AC160148.7| Mus musculus 6 BAC RP23-384N6 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 207306

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 336    acagcaccatatgaaggtggggtg 359
              ||||||||||||||||| ||||||
Sbjct: 116012 acagcaccatatgaaggcggggtg 116035
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>gb|AC093179.1| Homo sapiens chromosome 3 clone RP11-983J7 map 3p, complete sequence
          Length = 181321

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    gaccaagttacacggagcta 153
              ||||||||||||||||||||
Sbjct: 169863 gaccaagttacacggagcta 169882
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 52       cacaaatatacaagaaaata 71
                ||||||||||||||||||||
Sbjct: 25333672 cacaaatatacaagaaaata 25333691
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>gb|AC109347.3| Homo sapiens BAC clone RP11-73K9 from 4, complete sequence
          Length = 109668

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 1     catagggtctctgtgaatat 20
             ||||||||||||||||||||
Sbjct: 94245 catagggtctctgtgaatat 94226
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>gb|AC157911.5| Mus musculus chromosome 19, clone RP24-192F3, complete sequence
          Length = 168559

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    agaacaccaaacacaaatat 60
             ||||||||||||||||||||
Sbjct: 25105 agaacaccaaacacaaatat 25086
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>gb|AC008938.9| Homo sapiens chromosome 16 clone CTD-2313J23, complete sequence
          Length = 99486

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 41    agaacaccaaacacaaatatacaa 64
             ||||||| ||||||||||||||||
Sbjct: 59716 agaacacaaaacacaaatatacaa 59693
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>gb|AC019330.3| Homo sapiens BAC clone RP11-81N16 from 2, complete sequence
          Length = 167777

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 50    aacacaaatatacaagaaaa 69
             ||||||||||||||||||||
Sbjct: 43577 aacacaaatatacaagaaaa 43558
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>gb|AC090937.2| Homo sapiens chromosome 3 clone RP11-316A10 map 3p, complete sequence
          Length = 160702

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 134   gaccaagttacacggagcta 153
             ||||||||||||||||||||
Sbjct: 48377 gaccaagttacacggagcta 48358
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>gb|AC161879.5| Mus musculus BAC clone RP23-264A15 from chromosome 1, complete sequence
          Length = 206995

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 185    acaaatttttctccagggctttgt 208
              ||||| ||||||||||||||||||
Sbjct: 136285 acaaacttttctccagggctttgt 136262
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>emb|CT025570.7| Mouse DNA sequence from clone RP24-82O4 on chromosome 14, complete
              sequence
          Length = 232110

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 493    aatggttttgatgtacaggt 512
              ||||||||||||||||||||
Sbjct: 147611 aatggttttgatgtacaggt 147592
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>dbj|BA000021.3| Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis DNA,
              complete genome
          Length = 697724

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    agtaatatgaaacaaatttt 193
              ||||||||||||||||||||
Sbjct: 678892 agtaatatgaaacaaatttt 678873
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>emb|AL805951.6| Mouse DNA sequence from clone RP23-326P3 on chromosome 4, complete
             sequence
          Length = 197080

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   aatatgaaacaaatttttct 196
             ||||||||||||||||||||
Sbjct: 15016 aatatgaaacaaatttttct 14997
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>emb|AL732538.6| Mouse DNA sequence from clone RP23-242O9 on chromosome 4, complete
             sequence
          Length = 172802

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   cagggctttgtgcattctgg 217
             ||||||||||||||||||||
Sbjct: 37548 cagggctttgtgcattctgg 37529


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,174,295
Number of Sequences: 3902068
Number of extensions: 5174295
Number of successful extensions: 108430
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108166
Number of HSP's gapped (non-prelim): 258
length of query: 550
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 527
effective length of database: 17,143,297,704
effective search space: 9034517890008
effective search space used: 9034517890008
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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