ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62j09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AY104750.1| Zea mays PCO077049 mRNA sequence 212 1e-51
2ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative... 101 3e-18
3dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 3e-18
4gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 80 1e-11
7ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHET... 42 2.1
8gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genom... 42 2.1
9gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds 42 2.1
10emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon 42 2.1
11gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577)... 42 2.1
12emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in ... 42 2.1
13gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, comple... 42 2.1
14emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase 42 2.1
15emb|Y12555.1|ATY12555 A.thaliana mRNA for alanyl tRNA synthetase 42 2.1
16emb|AL162633.3|CNS01RHY Human chromosome 14 DNA sequence BAC R-2... 42 2.1
17emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-9... 42 2.1
18dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone... 42 2.1
19emb|X80345.1|HC28SRIB H.catenoides gene for 28S ribosomal RNA 42 2.1
20gb|AC122560.8| Mus musculus chromosome 15, clone RP24-93E14, com... 40 8.2
21ref|XM_512589.1| PREDICTED: Pan troglodytes similar to ZD52F10 p... 40 8.2
22gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 8.2
23gb|AC107679.19| Mus musculus chromosome 1, clone RP23-256H11, co... 40 8.2
24gb|AY622965.1| Homo sapiens dermokine-beta mRNA, complete cds 40 8.2
25gb|BC065111.1| Mus musculus RIKEN cDNA 4931407K02 gene, mRNA (cD... 40 8.2
26gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome... 40 8.2
27gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca co... 40 8.2
28emb|CT009488.4| M.truncatula DNA sequence from clone MTH2-70J8 o... 40 8.2
29gb|AY358412.1| Homo sapiens clone DNA59212 KFQG729 (UNQ729) mRNA... 40 8.2
30gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete se... 40 8.2
31emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete g... 40 8.2
32emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Enceph... 40 8.2
33gb|BC035311.1| Homo sapiens dermokine, mRNA (cDNA clone MGC:2166... 40 8.2
34gb|AE006030.1| Caulobacter crescentus CB15 section 356 of 359 of... 40 8.2
35ref|NM_033317.2| Homo sapiens dermokine (ZD52F10), transcript va... 40 8.2
36gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 gen... 40 8.2
37dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, co... 40 8.2
38ref|NM_029946.3| Mus musculus RIKEN cDNA 4931407K02 gene (493140... 40 8.2
39gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete... 40 8.2
40gb|AY789697.1| Homo sapiens dermokine-gamma 2 mRNA, complete cds... 40 8.2
41gb|AY789696.1| Homo sapiens dermokine-gamma 1 mRNA, complete cds... 40 8.2
42gb|AY789695.1| Homo sapiens dermokine-beta mRNA, complete cds 40 8.2
43gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, co... 40 8.2
44gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, compl... 40 8.2
45dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
46gb|AC157086.2| Mus musculus BAC clone RP24-79B18 from chromosome... 40 8.2
47gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complet... 40 8.2
48gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmid... 40 8.2
49gb|AC138125.1| Homo sapiens chromosome 19 clone LLNLR-228H6, com... 40 8.2
50dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, com... 40 8.2
51dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic... 40 8.2
52emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA2... 40 8.2
53emb|AJ938182.1| Staphylococcus aureus RF122 complete genome 40 8.2
54gb|AC002389.1|AC002389 Human DNA from chromosome 19 specific cos... 40 8.2
55emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on ch... 40 8.2

>gb|AY104750.1| Zea mays PCO077049 mRNA sequence
          Length = 3244

 Score =  212 bits (107), Expect = 1e-51
 Identities = 271/325 (83%), Gaps = 3/325 (0%)
 Strand = Plus / Minus

                                                                        
Query: 270  ccattgcctccttgacccgagaagcatcacttccctggccctgggcaagaccattcttgc 329
            ||||||| ||||||| | ||||||| ||||| |||||||||||||| |  || |||||||
Sbjct: 2973 ccattgcttccttgagctgagaagcgtcactcccctggccctgggcgacgccgttcttgc 2914

                                                                        
Query: 330  cgccgcctcctcttcccttgagtggtgcgattgaaggtgtaagccaatccaacaccttga 389
            |||| || ||||||||||||||||| || ||||||||||| ||||| |||||||||||||
Sbjct: 2913 cgccaccgcctcttcccttgagtggcgcaattgaaggtgttagccagtccaacaccttga 2854

                                                                        
Query: 390  agccattgggtgcatccggaggtacgccggcatatataacagccttgtttgatgcctcat 449
            ||||  | || ||||  ||||| || || ||||| ||||| || ||||||||||||||||
Sbjct: 2853 agccgctaggagcattgggaggcacaccagcatagataacggctttgtttgatgcctcat 2794

                                                                        
Query: 450  ctgtgctgaataccattatcggcaaactcttaaaacggttcatggctttgacaactgctt 509
            | |||||||||| |||||| ||||||| |||     ||| |||| |||||| ||| || |
Sbjct: 2793 cggtgctgaataacattataggcaaaccctt---ctggtccatgactttgataaccgcct 2737

                                                                        
Query: 510  cccggacagcagtggtatcaagacccacgtcgacatgagcaacacagaagggttttcctt 569
            | |||||||| ||||||||||||||||| || ||||||| |||||| || |||||   | 
Sbjct: 2736 cacggacagccgtggtatcaagacccacatccacatgagtaacacaaaacggtttatttc 2677

                                     
Query: 570  cggaaagagtagcttctgcagcatc 594
            | ||||||| |||||||||||||||
Sbjct: 2676 ctgaaagagcagcttctgcagcatc 2652



to top

>ref|NM_195184.1| Oryza sativa (japonica cultivar-group) putative cytosolic tRNA-Ala
            synthetase (OSJNBb0022I16.6), mRNA
          Length = 2085

 Score =  101 bits (51), Expect = 3e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 238  cagcttcatcgaagctatctgggtagcaagctccattgcctccttgacccgagaagcatc 297
            ||||||||| ||||||||||||||||||| |||||| || ||||| |   |||| || ||
Sbjct: 2079 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2020

                                                                        
Query: 298  acttccctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgc 357
            | ||||||||||||||||||  ||||||||||| || |||||  |||| ||||| || ||
Sbjct: 2019 agttccctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgc 1960

                                               
Query: 358  gattgaaggtgtaagccaatccaacaccttgaagc 392
             || || ||||| | ||||||||||||||| ||||
Sbjct: 1959 aatcgatggtgtcaaccaatccaacaccttcaagc 1925



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                        
Query: 495  ctttgacaactgcttcccggacagcagtggtatcaagacccacgtcgacatgagcaacac 554
            |||||| |||||||||||| | |||| | || ||||||||||| || |||||||||||||
Sbjct: 1825 ctttgataactgcttcccgaatagcacttgtgtcaagacccacatctacatgagcaacac 1766

                                    
Query: 555  agaagggttttccttcggaaagag 578
            ||||| | |||||||| |||||||
Sbjct: 1765 agaagcgctttccttcagaaagag 1742



to top

>dbj|AK066368.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013059M16, full
            insert sequence
          Length = 3214

 Score =  101 bits (51), Expect = 3e-18
 Identities = 129/155 (83%)
 Strand = Plus / Minus

                                                                        
Query: 238  cagcttcatcgaagctatctgggtagcaagctccattgcctccttgacccgagaagcatc 297
            ||||||||| ||||||||||||||||||| |||||| || ||||| |   |||| || ||
Sbjct: 3002 cagcttcattgaagctatctgggtagcaacctccatagcttcctttagttgagaggcctc 2943

                                                                        
Query: 298  acttccctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgc 357
            | ||||||||||||||||||  ||||||||||| || |||||  |||| ||||| || ||
Sbjct: 2942 agttccctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgc 2883

                                               
Query: 358  gattgaaggtgtaagccaatccaacaccttgaagc 392
             || || ||||| | ||||||||||||||| ||||
Sbjct: 2882 aatcgatggtgtcaaccaatccaacaccttcaagc 2848



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                        
Query: 495  ctttgacaactgcttcccggacagcagtggtatcaagacccacgtcgacatgagcaacac 554
            |||||| |||||||||||| | |||| | || ||||||||||| || |||||||||||||
Sbjct: 2748 ctttgataactgcttcccgaatagcacttgtgtcaagacccacatctacatgagcaacac 2689

                                    
Query: 555  agaagggttttccttcggaaagag 578
            ||||| | |||||||| |||||||
Sbjct: 2688 agaagcgctttccttcagaaagag 2665



to top

>gb|AC091238.2| Oryza sativa (japonica cultivar-group) chromosome 10 clone
             OSJNBb0022I16, complete sequence
          Length = 127068

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                         
Query: 495   ctttgacaactgcttcccggacagcagtggtatcaagacccacgtcgacatgagcaacac 554
             |||||| |||||||||||| | |||| | || ||||||||||| || |||||||||||||
Sbjct: 55622 ctttgataactgcttcccgaatagcacttgtgtcaagacccacatctacatgagcaacac 55563

                                     
Query: 555   agaagggttttccttcggaaagag 578
             ||||| | |||||||| |||||||
Sbjct: 55562 agaagcgctttccttcagaaagag 55539



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                         
Query: 303   cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 362
             |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 56559 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 56500

                                           
Query: 363   aaggtgtaagccaatccaacaccttgaagc 392
             | ||||| | ||||||||||||||| ||||
Sbjct: 56499 atggtgtcaaccaatccaacaccttcaagc 56470



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                          
Query: 238   cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 282
             ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 56729 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 56685



to top

>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                           
Query: 495     ctttgacaactgcttcccggacagcagtggtatcaagacccacgtcgacatgagcaacac 554
               |||||| |||||||||||| | |||| | || ||||||||||| || |||||||||||||
Sbjct: 5292424 ctttgataactgcttcccgaatagcacttgtgtcaagacccacatctacatgagcaacac 5292365

                                       
Query: 555     agaagggttttccttcggaaagag 578
               ||||| | |||||||| |||||||
Sbjct: 5292364 agaagcgctttccttcagaaagag 5292341



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                           
Query: 303     cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 362
               |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 5293361 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 5293302

                                             
Query: 363     aaggtgtaagccaatccaacaccttgaagc 392
               | ||||| | ||||||||||||||| ||||
Sbjct: 5293301 atggtgtcaaccaatccaacaccttcaagc 5293272



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 238     cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 282
               ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 5293531 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5293487



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 328      gccgccgcctcctcttccct 347
                ||||||||||||||||||||
Sbjct: 20868267 gccgccgcctcctcttccct 20868248



to top

>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 73/84 (86%)
 Strand = Plus / Minus

                                                                           
Query: 495     ctttgacaactgcttcccggacagcagtggtatcaagacccacgtcgacatgagcaacac 554
               |||||| |||||||||||| | |||| | || ||||||||||| || |||||||||||||
Sbjct: 5293211 ctttgataactgcttcccgaatagcacttgtgtcaagacccacatctacatgagcaacac 5293152

                                       
Query: 555     agaagggttttccttcggaaagag 578
               ||||| | |||||||| |||||||
Sbjct: 5293151 agaagcgctttccttcagaaagag 5293128



 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 75/90 (83%)
 Strand = Plus / Minus

                                                                           
Query: 303     cctggccctgggcaagaccattcttgccgccgcctcctcttcccttgagtggtgcgattg 362
               |||||||||||||||  ||||||||||| || |||||  |||| ||||| || || || |
Sbjct: 5294148 cctggccctgggcaattccattcttgccaccacctccctttcctttgaggggcgcaatcg 5294089

                                             
Query: 363     aaggtgtaagccaatccaacaccttgaagc 392
               | ||||| | ||||||||||||||| ||||
Sbjct: 5294088 atggtgtcaaccaatccaacaccttcaagc 5294059



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                            
Query: 238     cagcttcatcgaagctatctgggtagcaagctccattgcctcctt 282
               ||||||||| ||||||||||||||||||| |||||| || |||||
Sbjct: 5294318 cagcttcattgaagctatctgggtagcaacctccatagcttcctt 5294274



 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 328      gccgccgcctcctcttccct 347
                ||||||||||||||||||||
Sbjct: 20879531 gccgccgcctcctcttccct 20879512



to top

>ref|NM_103905.2| Arabidopsis thaliana ALATS (ALANYL-TRNA SYNTHETASE); ATP binding /
            alanine-tRNA ligase/ nucleic acid binding AT1G50200
            (ALATS) mRNA, complete cds
          Length = 3397

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 446  tcatctgtgctgaataccattatcg 470
            |||||||||||||| ||||||||||
Sbjct: 2962 tcatctgtgctgaacaccattatcg 2938



to top

>gb|AC007980.1| Arabidopsis thaliana chromosome I BAC F14I3 genomic sequence, complete
             sequence
          Length = 100975

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 446   tcatctgtgctgaataccattatcg 470
             |||||||||||||| ||||||||||
Sbjct: 85119 tcatctgtgctgaacaccattatcg 85095



to top

>gb|BT008807.1| Arabidopsis thaliana At1g50200 gene, complete cds
          Length = 2868

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 446  tcatctgtgctgaataccattatcg 470
            |||||||||||||| ||||||||||
Sbjct: 2648 tcatctgtgctgaacaccattatcg 2624



to top

>emb|X63049.1|AQPETBDOP A.quadruplicatum petBD operon
          Length = 2858

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 321 cattcttgccgccgcctcctc 341
           |||||||||||||||||||||
Sbjct: 727 cattcttgccgccgcctcctc 747



to top

>gb|BT008649.1| Arabidopsis thaliana clone RAFL09-78-D07 (R19577) At1g50200 mRNA,
            complete sequence
          Length = 3295

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 446  tcatctgtgctgaataccattatcg 470
            |||||||||||||| ||||||||||
Sbjct: 2892 tcatctgtgctgaacaccattatcg 2868



to top

>emb|BX537356.4| Zebrafish DNA sequence from clone DKEY-46P12 in linkage group 7,
             complete sequence
          Length = 105480

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 123   agttgattttcgtgaataatt 143
             |||||||||||||||||||||
Sbjct: 74412 agttgattttcgtgaataatt 74392



to top

>gb|BT002526.1| Arabidopsis thaliana Unknown protein mRNA, complete cds
          Length = 3172

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 446  tcatctgtgctgaataccattatcg 470
            |||||||||||||| ||||||||||
Sbjct: 2787 tcatctgtgctgaacaccattatcg 2763



to top

>emb|Z22673.1|ATTRNASYA A.thaliana tRNA synthetase
          Length = 3357

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 446  tcatctgtgctgaataccattatcg 470
            |||||||||||||| ||||||||||
Sbjct: 2962 tcatctgtgctgaacaccattatcg 2938



to top

>emb|Y12555.1|ATY12555 A.thaliana mRNA for alanyl tRNA synthetase
          Length = 936

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 446 tcatctgtgctgaataccattatcg 470
           |||||||||||||| ||||||||||
Sbjct: 536 tcatctgtgctgaacaccattatcg 512



to top

>emb|AL162633.3|CNS01RHY Human chromosome 14 DNA sequence BAC R-210O8 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 164550

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 220   agtctcaacaaatcagctcagcttc 244
             ||||||| |||||||||||||||||
Sbjct: 60085 agtctcatcaaatcagctcagcttc 60061



to top

>emb|AL355073.5|CNS05TC7 Human chromosome 14 DNA sequence BAC R-930O11 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 175988

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 220    agtctcaacaaatcagctcagcttc 244
              ||||||| |||||||||||||||||
Sbjct: 154766 agtctcatcaaatcagctcagcttc 154790



to top

>dbj|AP004895.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT02D01, TM0039,
             complete sequence
          Length = 91268

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 236   ctcagcttcatcgaagctatc 256
             |||||||||||||||||||||
Sbjct: 46883 ctcagcttcatcgaagctatc 46903



to top

>emb|X80345.1|HC28SRIB H.catenoides gene for 28S ribosomal RNA
          Length = 3655

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 263  gcaagctccattgcctccttg 283
            |||||||||||||||||||||
Sbjct: 2849 gcaagctccattgcctccttg 2869



to top

>gb|AC122560.8| Mus musculus chromosome 15, clone RP24-93E14, complete sequence
          Length = 174003

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 222    tctcaacaaatcagctcagc 241
              ||||||||||||||||||||
Sbjct: 108976 tctcaacaaatcagctcagc 108995



to top

>ref|XM_512589.1| PREDICTED: Pan troglodytes similar to ZD52F10 protein (LOC455950),
            mRNA
          Length = 2690

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 268  ctccattgcctccttgaccc 287
            ||||||||||||||||||||
Sbjct: 1222 ctccattgcctccttgaccc 1203



to top

>gb|AE017344.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 4, complete
             sequence
          Length = 1783081

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 270   ccattgcctccttgacccga 289
             ||||||||||||||||||||
Sbjct: 21794 ccattgcctccttgacccga 21813



to top

>gb|AC107679.19| Mus musculus chromosome 1, clone RP23-256H11, complete sequence
          Length = 168732

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 299    cttccctggccctgggcaag 318
              ||||||||||||||||||||
Sbjct: 100668 cttccctggccctgggcaag 100687



to top

>gb|AY622965.1| Homo sapiens dermokine-beta mRNA, complete cds
          Length = 1431

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 598 ctccattgcctccttgaccc 579



to top

>gb|BC065111.1| Mus musculus RIKEN cDNA 4931407K02 gene, mRNA (cDNA clone MGC:86101
            IMAGE:30536704), complete cds
          Length = 5031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  gcttccagttgattttcgtg 136
            ||||||||||||||||||||
Sbjct: 1265 gcttccagttgattttcgtg 1246



to top

>gb|AC135914.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0074P11, complete sequence
          Length = 148753

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 329   ccgccgcctcctcttccctt 348
             ||||||||||||||||||||
Sbjct: 85544 ccgccgcctcctcttccctt 85525



to top

>gb|CP000238.1| Baumannia cicadellinicola str. Hc (Homalodisca coagulata), complete
              genome
          Length = 686194

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 31     tataacactccatttgataa 50
              ||||||||||||||||||||
Sbjct: 292285 tataacactccatttgataa 292304



to top

>emb|CT009488.4| M.truncatula DNA sequence from clone MTH2-70J8 on chromosome 3,
             complete sequence
          Length = 119377

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 552   cacagaagggttttccttcg 571
             ||||||||||||||||||||
Sbjct: 28386 cacagaagggttttccttcg 28367



to top

>gb|AY358412.1| Homo sapiens clone DNA59212 KFQG729 (UNQ729) mRNA, complete cds
          Length = 1734

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 781 ctccattgcctccttgaccc 762



to top

>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
          Length = 135248

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 552    cacagaagggttttccttcg 571
              ||||||||||||||||||||
Sbjct: 122982 cacagaagggttttccttcg 122963



to top

>emb|BX571857.1| Staphylococcus aureus strain MSSA476, complete genome
          Length = 2799802

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2574907 aatatgtatgaagaccagtc 2574888



to top

>emb|AL590447.1|CNS07EGE chromosome VII of strain GB-M1 of Encephalitozoon cuniculi (Microspora)
          Length = 226576

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 581   gcttctgcagcatctatgac 600
             ||||||||||||||||||||
Sbjct: 70261 gcttctgcagcatctatgac 70280



to top

>gb|BC035311.1| Homo sapiens dermokine, mRNA (cDNA clone MGC:21664 IMAGE:4752921),
           complete cds
          Length = 1982

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 775 ctccattgcctccttgaccc 756



to top

>gb|AE006030.1| Caulobacter crescentus CB15 section 356 of 359 of the complete genome
          Length = 11452

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 302  ccctggccctgggcaagacc 321
            ||||||||||||||||||||
Sbjct: 2649 ccctggccctgggcaagacc 2668



to top

>ref|NM_033317.2| Homo sapiens dermokine (ZD52F10), transcript variant 2, mRNA
          Length = 1982

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 775 ctccattgcctccttgaccc 756



to top

>gb|AC025783.10| Oryza sativa chromosome 10 BAC OSJNBa0001O14 genomic sequence, complete
              sequence
          Length = 178022

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 328    gccgccgcctcctcttccct 347
              ||||||||||||||||||||
Sbjct: 130666 gccgccgcctcctcttccct 130647



to top

>dbj|BA000017.4| Staphylococcus aureus subsp. aureus Mu50 DNA, complete genome
          Length = 2878529

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2656844 aatatgtatgaagaccagtc 2656825



to top

>ref|NM_029946.3| Mus musculus RIKEN cDNA 4931407K02 gene (4931407K02Rik), mRNA
          Length = 5031

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 117  gcttccagttgattttcgtg 136
            ||||||||||||||||||||
Sbjct: 1265 gcttccagttgattttcgtg 1246



to top

>gb|CP000046.1| Staphylococcus aureus subsp. aureus COL, complete genome
          Length = 2809422

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2583910 aatatgtatgaagaccagtc 2583891



to top

>gb|AY789697.1| Homo sapiens dermokine-gamma 2 mRNA, complete cds, alternatively
           spliced
          Length = 1293

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585



to top

>gb|AY789696.1| Homo sapiens dermokine-gamma 1 mRNA, complete cds, alternatively
           spliced
          Length = 1257

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585



to top

>gb|AY789695.1| Homo sapiens dermokine-beta mRNA, complete cds
          Length = 1437

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 268 ctccattgcctccttgaccc 287
           ||||||||||||||||||||
Sbjct: 604 ctccattgcctccttgaccc 585



to top

>gb|CP000253.1| Staphylococcus aureus subsp. aureus NCTC 8325, complete genome
          Length = 2821361

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2595854 aatatgtatgaagaccagtc 2595835



to top

>gb|CP000255.1| Staphylococcus aureus subsp. aureus USA300, complete genome
          Length = 2872769

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2647216 aatatgtatgaagaccagtc 2647197



to top

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 329     ccgccgcctcctcttccctt 348
               ||||||||||||||||||||
Sbjct: 6854590 ccgccgcctcctcttccctt 6854571



to top

>gb|AC157086.2| Mus musculus BAC clone RP24-79B18 from chromosome 9, complete sequence
          Length = 200734

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 428   acagccttgtttgatgcctcatct 451
             ||||||||||||| ||||||||||
Sbjct: 76961 acagccttgtttgctgcctcatct 76938



to top

>gb|AC012074.9| Homo sapiens BAC clone RP11-458N5 from 2, complete sequence
          Length = 197652

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   tgccgccgcctcctcttccc 346
             ||||||||||||||||||||
Sbjct: 77341 tgccgccgcctcctcttccc 77360



to top

>gb|U18530.1|SCE9871 Saccharomyces cerevisiae chromosome V cosmids 9871, 8199, 9867, 9495
             and lambda clones 6693 and 5898
          Length = 62643

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 294   catcacttccctggccctgg 313
             ||||||||||||||||||||
Sbjct: 22165 catcacttccctggccctgg 22184



to top

>gb|AC138125.1| Homo sapiens chromosome 19 clone LLNLR-228H6, complete sequence
          Length = 11311

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  ctccattgcctccttgaccc 287
            ||||||||||||||||||||
Sbjct: 4989 ctccattgcctccttgaccc 5008



to top

>dbj|BA000033.2| Staphylococcus aureus subsp. aureus MW2 DNA, complete genome, strain:MW2
          Length = 2820462

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2595548 aatatgtatgaagaccagtc 2595529



to top

>dbj|BA000018.3| Staphylococcus aureus subsp. aureus N315 genomic DNA, complete genome
          Length = 2814816

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2586418 aatatgtatgaagaccagtc 2586399



to top

>emb|BX571856.1| Staphylococcus aureus subsp. aureus strain MRSA252, complete genome
          Length = 2902619

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2675152 aatatgtatgaagaccagtc 2675133



to top

>emb|AJ938182.1| Staphylococcus aureus RF122 complete genome
          Length = 2742531

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 204     aatatgtatgaagaccagtc 223
               ||||||||||||||||||||
Sbjct: 2523311 aatatgtatgaagaccagtc 2523292



to top

>gb|AC002389.1|AC002389 Human DNA from chromosome 19 specific cosmid R28461, genomic
            sequence, complete sequence
          Length = 46275

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 268  ctccattgcctccttgaccc 287
            ||||||||||||||||||||
Sbjct: 2144 ctccattgcctccttgaccc 2163



to top

>emb|AL513354.14| Mouse DNA sequence from clone RP23-150J22 on chromosome 15, complete
              sequence
          Length = 227073

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 117    gcttccagttgattttcgtg 136
              ||||||||||||||||||||
Sbjct: 166338 gcttccagttgattttcgtg 166357


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,417,535
Number of Sequences: 3902068
Number of extensions: 5417535
Number of successful extensions: 101080
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 100699
Number of HSP's gapped (non-prelim): 380
length of query: 601
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 578
effective length of database: 17,143,297,704
effective search space: 9908826072912
effective search space used: 9908826072912
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top