>UVRB_MYCLE (P57991) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 698

 Score = 27.7 bits (60), Expect = 7.3
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = +2

Query: 233 QPA--D*TEQRIVVGKKNPVLLTQVASGKGASEIW 331
           QPA  D  ++RI+ G+++ VLL    +GK A+  W
Sbjct: 19  QPAAIDELQRRILAGERDVVLLGATGTGKSATTAW 53

>CAH2_CHLRE (P24258) Carbonic anhydrase 2 precursor (EC 4.2.1.1) (Carbonate|
           dehydratase 2) (CA2) [Contains: Carbonic anhydrase 2
           large chain; Carbonic anhydrase 2 small chain]
          Length = 380

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 84  ISFGNWNEIKLGIWEVQCYVSGTAA 10
           ISFG WN  +L + E +C  + T A
Sbjct: 279 ISFGQWNRYRLAVGEKECNSTETDA 303

>UVRB_MYCTU (P67422) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 698

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 233 QPA--D*TEQRIVVGKKNPVLLTQVASGKGASEIW 331
           QPA  D  E+RI  G+++ VLL    +GK A+  W
Sbjct: 19  QPAAIDELERRINAGERDVVLLGATGTGKSATTAW 53

>UVRB_MYCBO (P67423) UvrABC system protein B (Protein uvrB) (Excinuclease ABC|
           subunit B)
          Length = 698

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +2

Query: 233 QPA--D*TEQRIVVGKKNPVLLTQVASGKGASEIW 331
           QPA  D  E+RI  G+++ VLL    +GK A+  W
Sbjct: 19  QPAAIDELERRINAGERDVVLLGATGTGKSATTAW 53

>PEX16_HUMAN (Q9Y5Y5) Peroxisomal membrane protein PEX16 (Peroxin-16)|
           (Peroxisomal biogenesis factor 16)
          Length = 336

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 12/27 (44%), Positives = 19/27 (70%)
 Frame = -1

Query: 344 RHKHSISQMPLSLMLLESARRGFSYLL 264
           R++  +++ P +   LE+A RGFSYLL
Sbjct: 10  RYQEYVTRHPAATAQLETAVRGFSYLL 36

>Y1093_METJA (Q58493) Hypothetical protein MJ1093|
          Length = 300

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 4/40 (10%)
 Frame = +1

Query: 64  IPISKRNHV----QELYAYSYMTNCTKLWLQLKRSHLRPP 171
           IP    NHV    +EL  + Y+ N   L    K SHLRPP
Sbjct: 201 IPEINMNHVVDIAKELKDFVYIQNIIPLIPLYKMSHLRPP 240


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,096,275
Number of Sequences: 219361
Number of extensions: 561983
Number of successful extensions: 1094
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1090
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1094
length of database: 80,573,946
effective HSP length: 90
effective length of database: 60,831,456
effective search space used: 1459954944
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)