ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62j06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF188027.5| Homo sapiens chromosome 8 clone RP11-101A8 map q2... 40 4.6
2gb|AF110324.3| Homo sapiens chromosome 8 clone GS1-9H13 map q21.... 40 4.6
3gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete s... 40 4.6
4gb|AC104170.2| Homo sapiens chromosome 1 clone RP11-253A20, comp... 40 4.6
5emb|BX649492.6| Zebrafish DNA sequence from clone DKEY-13P3 in l... 40 4.6
6emb|BX649333.9| Zebrafish DNA sequence from clone DKEY-200F3 in ... 40 4.6
7emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in... 40 4.6
8dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.6
9dbj|AP002760.4| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.6
10emb|CT573020.1| Medicago truncatula chromosome 5 clone mth2-83i1... 40 4.6

>gb|AF188027.5| Homo sapiens chromosome 8 clone RP11-101A8 map q21.11, complete sequence
          Length = 146199

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 141    ccagctcaagagatctcact 160
              ||||||||||||||||||||
Sbjct: 134166 ccagctcaagagatctcact 134185



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>gb|AF110324.3| Homo sapiens chromosome 8 clone GS1-9H13 map q21.11, complete
            sequence
          Length = 89500

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 141  ccagctcaagagatctcact 160
            ||||||||||||||||||||
Sbjct: 9312 ccagctcaagagatctcact 9331



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>gb|AC128638.34| Medicago truncatula clone mth2-36h10, complete sequence
          Length = 110895

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    ccaaatccctagttttatttcatt 66
             ||||||||||||||| ||||||||
Sbjct: 78941 ccaaatccctagtttaatttcatt 78964



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>gb|AC104170.2| Homo sapiens chromosome 1 clone RP11-253A20, complete sequence
          Length = 141670

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    ttacgcttacagttacatga 118
             ||||||||||||||||||||
Sbjct: 73041 ttacgcttacagttacatga 73060



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>emb|BX649492.6| Zebrafish DNA sequence from clone DKEY-13P3 in linkage group 1, complete
              sequence
          Length = 189844

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     atttcattccaatttccaaa 78
              ||||||||||||||||||||
Sbjct: 130296 atttcattccaatttccaaa 130277



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>emb|BX649333.9| Zebrafish DNA sequence from clone DKEY-200F3 in linkage group 4, complete
              sequence
          Length = 273859

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 59     atttcattccaatttccaaa 78
              ||||||||||||||||||||
Sbjct: 141179 atttcattccaatttccaaa 141160



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>emb|BX000462.10| Zebrafish DNA sequence from clone DKEY-114F6 in linkage group 1,
             complete sequence
          Length = 167671

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 59    atttcattccaatttccaaa 78
             ||||||||||||||||||||
Sbjct: 27392 atttcattccaatttccaaa 27411



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>dbj|AP001458.6| Homo sapiens genomic DNA, chromosome 11 clone:RP11-831H9, complete
              sequence
          Length = 177433

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 175    caaggtctcttcttcttctt 194
              ||||||||||||||||||||
Sbjct: 111432 caaggtctcttcttcttctt 111413



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>dbj|AP002760.4| Homo sapiens genomic DNA, chromosome 11 clone:RP11-795E18, complete
              sequence
          Length = 211673

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 300    tagcatcagggaaaggggca 319
              ||||||||||||||||||||
Sbjct: 125023 tagcatcagggaaaggggca 125042



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>emb|CT573020.1| Medicago truncatula chromosome 5 clone mth2-83i12, COMPLETE SEQUENCE
          Length = 92109

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 57    ttatttcattccaatttcca 76
             ||||||||||||||||||||
Sbjct: 38378 ttatttcattccaatttcca 38359


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,783,662
Number of Sequences: 3902068
Number of extensions: 3783662
Number of successful extensions: 70511
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70497
Number of HSP's gapped (non-prelim): 14
length of query: 344
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 322
effective length of database: 17,147,199,772
effective search space: 5521398326584
effective search space used: 5521398326584
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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