ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FCGR1_MOUSE (P26151) High affinity immunoglobulin gamma Fc recep... 29 3.3
2SPT6H_BRARE (Q8UVK2) Transcription elongation factor SPT6 (Prote... 29 3.3
3PPK_VIBCH (Q9KU07) Polyphosphate kinase (EC 2.7.4.1) (Polyphosph... 28 4.3
4SL9A1_CRIGR (P48761) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exc... 28 5.6
5R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab po... 28 7.4
6GATA6_ARATH (Q6DBP8) GATA transcription factor 6 (AtGATA-6) 28 7.4
7JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting prot... 28 7.4
8HPSE_BOVIN (Q9MYY0) Heparanase precursor (EC 3.2.-.-) [Contains:... 27 9.6
9SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor 27 9.6
10FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc recep... 27 9.6
11APA2_KLULA (P49348) 5',5'''-P-1,P-4-tetraphosphate phosphorylase... 27 9.6
12YKD0_YEAST (P36099) Hypothetical 23.0 kDa protein in IXR1-TFA1 i... 27 9.6
13POLG_GBVB (Q69422) Genome polyprotein [Contains: Core protein; E... 27 9.6

>FCGR1_MOUSE (P26151) High affinity immunoglobulin gamma Fc receptor I precursor|
           (Fc-gamma RI) (FcRI) (IgG Fc receptor I)
          Length = 404

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 5/64 (7%)
 Frame = -3

Query: 277 HIKHSSKERRTRFVREASTELKKVSIRAPMAALQEVRTGTLTKLWFHVL-----SIMHQI 113
           HI  + +E    +  E +TE   V  R+P   LQ +   +   +WFH+L      IM  +
Sbjct: 255 HIARAEREDAGFYWCEVATEDSSVLKRSPELELQVLGPQSSAPVWFHILFYLSVGIMFSL 314

Query: 112 QTSL 101
            T L
Sbjct: 315 NTVL 318



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>SPT6H_BRARE (Q8UVK2) Transcription elongation factor SPT6 (Protein pandora)|
          Length = 1726

 Score = 28.9 bits (63), Expect = 3.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -2

Query: 320 QDSEDHRRKDLLPTPYQTFLEGEENEVRERSVDGAQEG 207
           +  E+   KDL P   Q F+E +E E  E + D  + G
Sbjct: 11  ESEEEFEEKDLKPKKTQRFMEEDEEEEEENTEDQDEHG 48



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>PPK_VIBCH (Q9KU07) Polyphosphate kinase (EC 2.7.4.1) (Polyphosphoric acid|
           kinase) (ATP-polyphosphate phosphotransferase)
          Length = 701

 Score = 28.5 bits (62), Expect = 4.3
 Identities = 22/75 (29%), Positives = 35/75 (46%)
 Frame = -3

Query: 283 LLHIKHSSKERRTRFVREASTELKKVSIRAPMAALQEVRTGTLTKLWFHVLSIMHQIQTS 104
           LLH  + S E  T  VR+AS + K VSI+     +   R    +KL   ++  +H  +  
Sbjct: 340 LLHYPYHSFEHMTELVRQASFDPKVVSIK-----INIYRVAKDSKLMNSLVDAVHNGKRV 394

Query: 103 LCRL*ASHRFADETN 59
           +  +    RF +E N
Sbjct: 395 VVVVELQARFDEEAN 409



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>SL9A1_CRIGR (P48761) Sodium/hydrogen exchanger 1 (Na(+)/H(+) exchanger 1)|
           (NHE-1) (Solute carrier family 9 member 1)
          Length = 822

 Score = 28.1 bits (61), Expect = 5.6
 Identities = 17/63 (26%), Positives = 27/63 (42%)
 Frame = -3

Query: 280 LHIKHSSKERRTRFVREASTELKKVSIRAPMAALQEVRTGTLTKLWFHVLSIMHQIQTSL 101
           LHI+H +K  R  F      ++  + +R P      +    L K+ FHV+  +  I    
Sbjct: 80  LHIEHGAKTLRKAF---PVLDIDYLHVRTPFEISLWILLACLMKIGFHVIPTISSIVPES 136

Query: 100 CRL 92
           C L
Sbjct: 137 CLL 139



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>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)|
            [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)]
            [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like
            proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown
            protein 1; 3C-like
          Length = 6781

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 17/60 (28%), Positives = 29/60 (48%)
 Frame = -3

Query: 274  IKHSSKERRTRFVREASTELKKVSIRAPMAALQEVRTGTLTKLWFHVLSIMHQIQTSLCR 95
            ++H+    ++ F REAST+ +K+   A  AA Q  +          V+S MH +   + R
Sbjct: 3700 LRHAMNVAKSEFDREASTQ-RKLDRMAEQAAAQMYKEARAVNRKSKVVSAMHSLLFGMLR 3758



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>GATA6_ARATH (Q6DBP8) GATA transcription factor 6 (AtGATA-6)|
          Length = 303

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = +2

Query: 143 PQFSQCACTNFLESCHGRSDRHLLELRRRFSHEPRSPLLRGM 268
           P++   +   F+ + H  S R ++E+RR+   +  S ++R +
Sbjct: 258 PEYRPASSPTFIPAVHSNSHRKIIEMRRKDDEQFDSSMIRAV 299



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>JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting protein 2|
           (JNK-interacting protein 2) (JIP-2) (JNK MAP kinase
           scaffold protein 2) (Islet-brain-2) (IB-2)
           (Mitogen-activated protein kinase 8-interacting protein
           2)
          Length = 824

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -2

Query: 326 ICQDSEDHRRKDLLPTPYQTFLEGEENEVRERSVDG-AQEGVDQSAHGSSPG 174
           IC   +D +  +++    +   E EE E  E   DG  QEG D  +   +PG
Sbjct: 71  ICSFQDDFQEFEMIDDNEEEDDEDEEEEEEEEEGDGEGQEGGDPGSEAPAPG 122



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>HPSE_BOVIN (Q9MYY0) Heparanase precursor (EC 3.2.-.-) [Contains: Heparanase 8|
           kDa subunit; Heparanase 50 kDa subunit]
          Length = 545

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 123 IIDS-TWNHSLVSVPVRTSWRAAMGALIDTFLSSVDASL 236
           +IDS TW+H  V+  + T        ++DTF+SSV  +L
Sbjct: 291 VIDSVTWHHYYVNGRIATKEDFLNPDILDTFISSVQKTL 329



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>SRCA_MOUSE (Q7TQ48) Sarcalumenin precursor|
          Length = 910

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = -2

Query: 308 DHRRKDLLPTPYQTFLEGEENEVRERSVDGAQEGVDQSAHGSSPGSSYRHTD 153
           DH+  +L  T       G+E+E RE + D  Q+   QS   ++PG  ++ TD
Sbjct: 225 DHQSTELDGTQ-DAIPAGDESEAREGAEDKPQDYSLQSEDTATPGPDHQPTD 275



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>FCGR1_HUMAN (P12314) High affinity immunoglobulin gamma Fc receptor I precursor|
           (Fc-gamma RI) (FcRI) (IgG Fc receptor I) (CD64 antigen)
          Length = 374

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -3

Query: 232 EASTELKKVSIRAPMAALQEVRTGTLTKLWFHVL 131
           EA+TE   V  R+P   LQ +     T +WFHVL
Sbjct: 261 EAATEDGNVLKRSPELELQVLGLQLPTPVWFHVL 294



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>APA2_KLULA (P49348) 5',5'''-P-1,P-4-tetraphosphate phosphorylase 2 (EC|
           2.7.7.53) (Diadenosine 5',5'''-P1,P4-tetraphosphate
           phosphorylase) (AP-4-A phosphorylase) (Ap4A
           phosphorylase II) (AP,A phosphorylase) (ATP
           adenylyltransferase)
          Length = 331

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
 Frame = -2

Query: 335 CGKICQDSEDHRRKDLLPTPYQ------TFLEGEENEVRERSVDGAQEGVDQSAHGSSP 177
           CG     S+DH+   +LP PY+          G+E+ +     +  Q+     AH + P
Sbjct: 149 CGPNSGSSQDHKHLQILPLPYKFVPYQDKLCSGKEHFIPNAKTEPLQDAKIPFAHYAVP 207



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>YKD0_YEAST (P36099) Hypothetical 23.0 kDa protein in IXR1-TFA1 intergenic|
           region
          Length = 201

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 316 IAKITGGKIYFLLHIKHSSKERRT 245
           I   TG  I+ L H KHSSK R T
Sbjct: 89  IGLYTGSHIWALTHCKHSSKSRGT 112



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>POLG_GBVB (Q69422) Genome polyprotein [Contains: Core protein; Envelope|
            glycoprotein E1; Envelope glycoprotein E2 (NS1); p13;
            Protease NS2-3 (EC 3.4.22.-); Serine
            protease/NTPase/helicase NS3 (EC 3.4.21.98) (EC 3.6.1.15)
            (EC 3.6.1.-) (Hepacivirin) (NS3P)
          Length = 2864

 Score = 27.3 bits (59), Expect = 9.6
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = -2

Query: 212  EGVDQSAHGSSPGSSYRHTD*TVVPCTVDYASDTDKFMQIIGIAS 78
            + V  +AH  S G    H   ++ P TVD A+D D +    G  S
Sbjct: 989  DNVLYTAHHGSKGRRLAHPTGSIHPITVDAANDQDIYQPPCGAGS 1033


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 46,427,406
Number of Sequences: 219361
Number of extensions: 819858
Number of successful extensions: 2144
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2144
length of database: 80,573,946
effective HSP length: 89
effective length of database: 61,050,817
effective search space used: 1465219608
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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