ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62j05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_872136.1| PREDICTED: Bos taurus similar to olfactory rece... 42 1.1
2emb|Z99262.1|SPAC9E9 S.pombe chromosome I cosmid c9E9 42 1.1
3gb|AC124384.4| Mus musculus BAC clone RP24-413G2 from chromosome... 42 1.1
4gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome 40 4.5
5gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mit... 40 4.5
6gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion... 40 4.5
7gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion... 40 4.5
8emb|AL360232.24| Human DNA sequence from clone RP11-374I18 on ch... 40 4.5
9dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, co... 40 4.5
10emb|CT030643.5| Mouse DNA sequence from clone RP23-348M4 on chro... 40 4.5
11emb|AL731552.11| Mouse DNA sequence from clone RP23-113K24 on ch... 40 4.5
12gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 40 4.5

>ref|XM_872136.1| PREDICTED: Bos taurus similar to olfactory receptor Olr837,
           transcript variant 3 (LOC514266), mRNA
          Length = 960

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 267 tgtttgatatggagtaggaag 287
           |||||||||||||||||||||
Sbjct: 956 tgtttgatatggagtaggaag 936



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>emb|Z99262.1|SPAC9E9 S.pombe chromosome I cosmid c9E9
          Length = 38078

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 303   gtgatcttcgctatcttgaca 323
             |||||||||||||||||||||
Sbjct: 23342 gtgatcttcgctatcttgaca 23322



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>gb|AC124384.4| Mus musculus BAC clone RP24-413G2 from chromosome 12, complete sequence
          Length = 183707

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 240   aacctcgttctcctctccttcgaggaatgtttg 272
             ||||||||||||| |||||| |||||| |||||
Sbjct: 85322 aacctcgttctccactccttagaggaaggtttg 85354



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>gb|AY506529.1| Zea mays strain NB mitochondrion, complete genome
          Length = 569630

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 166014 gcttcgccaaaaagaaagga 166033



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 36    gcttcgccaaaaagaaagga 55
             ||||||||||||||||||||
Sbjct: 65394 gcttcgccaaaaagaaagga 65413



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>gb|DQ490952.1| Zea mays subsp. mays genotype male-fertile NA mitochondrion, complete
              genome
          Length = 701046

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 507013 gcttcgccaaaaagaaagga 507032



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 392144 gcttcgccaaaaagaaagga 392125



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>gb|DQ490951.1| Zea mays subsp. mays genotype CMS-S mitochondrion, complete genome
          Length = 569553

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 410293 gcttcgccaaaaagaaagga 410312



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 103485 gcttcgccaaaaagaaagga 103504



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>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome
          Length = 535825

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 358180 gcttcgccaaaaagaaagga 358199



 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 36     gcttcgccaaaaagaaagga 55
              ||||||||||||||||||||
Sbjct: 174785 gcttcgccaaaaagaaagga 174804



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>emb|AL360232.24| Human DNA sequence from clone RP11-374I18 on chromosome 6, complete
             sequence
          Length = 157784

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   agtttagtcagtgtgcctgt 166
             ||||||||||||||||||||
Sbjct: 95200 agtttagtcagtgtgcctgt 95181



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>dbj|AP008230.1| Desulfitobacterium hafniense Y51 genomic DNA, complete genome
          Length = 5727534

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 167     acgaacttcctggagagctg 186
               ||||||||||||||||||||
Sbjct: 1939342 acgaacttcctggagagctg 1939361



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>emb|CT030643.5| Mouse DNA sequence from clone RP23-348M4 on chromosome 12, complete
             sequence
          Length = 209600

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 95    tctgcataaacttgtctgtatctg 118
             ||||||||| ||||||||||||||
Sbjct: 46094 tctgcataaccttgtctgtatctg 46117



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>emb|AL731552.11| Mouse DNA sequence from clone RP23-113K24 on chromosome 2, complete
             sequence
          Length = 203304

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   tctttcctccggtgatcttc 311
             ||||||||||||||||||||
Sbjct: 38952 tctttcctccggtgatcttc 38933



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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 40.1 bits (20), Expect = 4.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 290     aatctttcctccggtgatcttcgc 313
               ||||||||||||||||||| ||||
Sbjct: 1563659 aatctttcctccggtgatcctcgc 1563636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,082,265
Number of Sequences: 3902068
Number of extensions: 3082265
Number of successful extensions: 48035
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 47993
Number of HSP's gapped (non-prelim): 42
length of query: 342
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 320
effective length of database: 17,147,199,772
effective search space: 5487103927040
effective search space used: 5487103927040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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