ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62i24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK073807.1| Oryza sativa (japonica cultivar-group) cDNA clon... 377 e-101
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 186 6e-44
3gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare str... 186 6e-44
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
5ref|NM_104515.2| Arabidopsis thaliana translation release factor... 109 1e-20
6gb|AY090252.1| Arabidopsis thaliana At1g56350/F14G9_3 mRNA sequence 109 1e-20
7emb|BX816417.1|CNS0ABWP Arabidopsis thaliana Full-length cDNA Co... 109 1e-20
8gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13... 90 1e-14
9gb|AC069159.8|AC069159 Arabidopsis thaliana chromosome 1 BAC F14... 90 1e-14
10emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, co... 46 0.15
11ref|NM_130270.3| Arabidopsis thaliana translation release factor... 44 0.58
12ref|NM_201977.1| Arabidopsis thaliana translation release factor... 44 0.58
13gb|AC127375.3| Mus musculus chromosome UNKNOWN clone RP23-48J17,... 44 0.58
14ref|XM_663281.1| Cryptosporidium hominis TU502 protein kinase do... 44 0.58
15gb|AY046045.1| Arabidopsis thaliana At3g30140 mRNA sequence 44 0.58
16gb|AE004959.1| Pseudomonas aeruginosa PAO1, section 520 of 529 o... 44 0.58
17emb|BX539333.2| Mouse DNA sequence from clone RP23-138J24 on chr... 44 0.58
18ref|XM_364069.1| Magnaporthe grisea 70-15 hypothetical protein (... 42 2.3
19emb|CT025568.7| Mouse DNA sequence from clone RP23-374L19 on chr... 42 2.3
20emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chro... 42 2.3
21gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 42 2.3
22gb|AC155925.2| Mus musculus BAC clone RP24-248C21 from 9, comple... 42 2.3
23ref|XM_420431.1| PREDICTED: Gallus gallus similar to U6 snRNA-as... 40 9.1
24emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete ... 40 9.1
25emb|CR318659.26| Zebrafish DNA sequence from clone CH211-215M5 i... 40 9.1
26ref|XM_448331.1| Candida glabrata CBS138, CAGL0K02431g partial mRNA 40 9.1
27emb|CR718030.2|CNS0GGZ8 Tetraodon nigroviridis full-length cDNA 40 9.1
28emb|CR717946.2|CNS0GGWW Tetraodon nigroviridis full-length cDNA 40 9.1
29emb|CR715191.2|CNS0GESJ Tetraodon nigroviridis full-length cDNA 40 9.1
30emb|CR715154.2|CNS0GERI Tetraodon nigroviridis full-length cDNA 40 9.1
31emb|CR711518.2|CNS0GBYI Tetraodon nigroviridis full-length cDNA 40 9.1
32emb|CR714145.2|CNS0GDZH Tetraodon nigroviridis full-length cDNA 40 9.1
33emb|CR714049.2|CNS0GDWT Tetraodon nigroviridis full-length cDNA 40 9.1
34emb|CR710150.2|CNS0GAWI Tetraodon nigroviridis full-length cDNA 40 9.1
35emb|CR709990.2|CNS0GAS2 Tetraodon nigroviridis full-length cDNA 40 9.1
36emb|CR708975.2|CNS0G9ZV Tetraodon nigroviridis full-length cDNA 40 9.1
37emb|CR707643.2|CNS0G8YV Tetraodon nigroviridis full-length cDNA 40 9.1
38emb|CR706991.2|CNS0G8GR Tetraodon nigroviridis full-length cDNA 40 9.1
39emb|CR706677.2|CNS0G881 Tetraodon nigroviridis full-length cDNA 40 9.1
40emb|CR706158.2|CNS0G7TM Tetraodon nigroviridis full-length cDNA 40 9.1
41emb|CR380957.1| Candida glabrata strain CBS138 chromosome K comp... 40 9.1
42gb|AF391292.1| Branchiostoma floridae cosmid MPMGc117N2261, part... 40 9.1
43gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map... 40 9.1
44gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park C... 40 9.1
45gb|AF419552.1|AF419552 Arabidopsis thaliana At2g47020/F14M4.15 m... 40 9.1
46gb|AE014133.1| Streptococcus mutans UA159, complete genome 40 9.1
47gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 9.1
48gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome... 40 9.1 
>dbj|AK073807.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070I07, full
            insert sequence
          Length = 1870

 Score =  377 bits (190), Expect = e-101
 Identities = 301/338 (89%)
 Strand = Plus / Minus

                                                                        
Query: 308  atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
            ||||||||||||||||| || |  ||||||||||| || || || ||||| |||||||||
Sbjct: 1392 atgaaatcatctaggtccccattgaggactgaatcagggtcggatacttcgtagtttgtc 1333

                                                                        
Query: 368  cggagatctttgaccattcggtatggctgtagcacatacgatcttatttggtttccccag 427
            ||||||||||||||||| || ||||| || || ||||| |||||||||||||||||||||
Sbjct: 1332 cggagatctttgaccatacgatatggatggagtacataagatcttatttggtttccccag 1273

                                                                        
Query: 428  cttatttcagagagtgattgcgtgtgctctgcattcatctgtgcttgacgggtaatctca 487
            || ||||||||||||||||||||||| |||||||||||||||||||| |||| |||||||
Sbjct: 1272 ctgatttcagagagtgattgcgtgtggtctgcattcatctgtgcttggcgggcaatctca 1213

                                                                        
Query: 488  agctggtccaatctagattgcagcacagccattgctgatgccctattcatatgttgtgac 547
            ||||||||||  | ||| || ||||| ||||||||||||||| |||||||||| ||||| 
Sbjct: 1212 agctggtccagccgagactggagcactgccattgctgatgccttattcatatgctgtgat 1153

                                                                        
Query: 548  ctttcattttgacaagttgccgttgtaccagttgggatgtgcacaattctaacagcactt 607
            |||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||
Sbjct: 1152 ctttcattttgacaagttgcagttataccagttggaatgtgcacaattctaacagcactt 1093

                                                  
Query: 608  tctgtggtgttggcatgctggccgccgggtccaccaga 645
            ||||||  ||||||||| ||||| || || ||||||||
Sbjct: 1092 tctgtgcagttggcatgttggccaccaggaccaccaga 1055
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Minus

                                                                            
Query: 401      acatacgatcttatttggtttccccagcttatttcagagagtgattgcgtgtgctctgca 460
                ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 10824829 acataagatcttatttggtttccccagctgatttcagagagtgattgcgtgtggtctgca 10824770

                                                                            
Query: 461      ttcatctgtgcttgacgggtaatctcaagctggtccaatctagattgcagcacagccatt 520
                |||||||||||||| |||| |||||||||||||||||  | ||| || ||||| ||||||
Sbjct: 10824769 ttcatctgtgcttggcgggcaatctcaagctggtccagccgagactggagcactgccatt 10824710

                                          
Query: 521      gctgatgccctattcatatgttgtga 546
                ||||||||| |||||||||| |||||
Sbjct: 10824709 gctgatgccttattcatatgctgtga 10824684



 Score =  127 bits (64), Expect = 5e-26
 Identities = 91/100 (91%)
 Strand = Plus / Minus

                                                                            
Query: 546      acctttcattttgacaagttgccgttgtaccagttgggatgtgcacaattctaacagcac 605
                |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 10824387 acctttcattttgacaagttgcagttataccagttggaatgtgcacaattctaacagcac 10824328

                                                        
Query: 606      tttctgtggtgttggcatgctggccgccgggtccaccaga 645
                ||||||||  ||||||||| ||||| || || ||||||||
Sbjct: 10824327 tttctgtgcagttggcatgttggccaccaggaccaccaga 10824288



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 308      atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
                ||||||||||||||||| || |  ||||||||||| || || || ||||| |||||||||
Sbjct: 10825263 atgaaatcatctaggtccccattgaggactgaatcagggtcggatacttcgtagtttgtc 10825204

                                             
Query: 368      cggagatctttgaccattcggtatggctg 396
                ||||||||||||||||| || ||||||||
Sbjct: 10825203 cggagatctttgaccatacgatatggctg 10825175
to top
>gb|AC135908.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OJ1275B08,
             from chromosome 3, complete sequence
          Length = 108833

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Plus

                                                                         
Query: 401   acatacgatcttatttggtttccccagcttatttcagagagtgattgcgtgtgctctgca 460
             ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 30058 acataagatcttatttggtttccccagctgatttcagagagtgattgcgtgtggtctgca 30117

                                                                         
Query: 461   ttcatctgtgcttgacgggtaatctcaagctggtccaatctagattgcagcacagccatt 520
             |||||||||||||| |||| |||||||||||||||||  | ||| || ||||| ||||||
Sbjct: 30118 ttcatctgtgcttggcgggcaatctcaagctggtccagccgagactggagcactgccatt 30177

                                       
Query: 521   gctgatgccctattcatatgttgtga 546
             ||||||||| |||||||||| |||||
Sbjct: 30178 gctgatgccttattcatatgctgtga 30203



 Score =  127 bits (64), Expect = 5e-26
 Identities = 91/100 (91%)
 Strand = Plus / Plus

                                                                         
Query: 546   acctttcattttgacaagttgccgttgtaccagttgggatgtgcacaattctaacagcac 605
             |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 30500 acctttcattttgacaagttgcagttataccagttggaatgtgcacaattctaacagcac 30559

                                                     
Query: 606   tttctgtggtgttggcatgctggccgccgggtccaccaga 645
             ||||||||  ||||||||| ||||| || || ||||||||
Sbjct: 30560 tttctgtgcagttggcatgttggccaccaggaccaccaga 30599



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Plus

                                                                         
Query: 308   atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
             ||||||||||||||||| || |  ||||||||||| || || || ||||| |||||||||
Sbjct: 29624 atgaaatcatctaggtccccattgaggactgaatcagggtcggatacttcgtagtttgtc 29683

                                          
Query: 368   cggagatctttgaccattcggtatggctg 396
             ||||||||||||||||| || ||||||||
Sbjct: 29684 cggagatctttgaccatacgatatggctg 29712
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  186 bits (94), Expect = 6e-44
 Identities = 133/146 (91%)
 Strand = Plus / Minus

                                                                            
Query: 401      acatacgatcttatttggtttccccagcttatttcagagagtgattgcgtgtgctctgca 460
                ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 10822930 acataagatcttatttggtttccccagctgatttcagagagtgattgcgtgtggtctgca 10822871

                                                                            
Query: 461      ttcatctgtgcttgacgggtaatctcaagctggtccaatctagattgcagcacagccatt 520
                |||||||||||||| |||| |||||||||||||||||  | ||| || ||||| ||||||
Sbjct: 10822870 ttcatctgtgcttggcgggcaatctcaagctggtccagccgagactggagcactgccatt 10822811

                                          
Query: 521      gctgatgccctattcatatgttgtga 546
                ||||||||| |||||||||| |||||
Sbjct: 10822810 gctgatgccttattcatatgctgtga 10822785



 Score =  127 bits (64), Expect = 5e-26
 Identities = 91/100 (91%)
 Strand = Plus / Minus

                                                                            
Query: 546      acctttcattttgacaagttgccgttgtaccagttgggatgtgcacaattctaacagcac 605
                |||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||
Sbjct: 10822488 acctttcattttgacaagttgcagttataccagttggaatgtgcacaattctaacagcac 10822429

                                                        
Query: 606      tttctgtggtgttggcatgctggccgccgggtccaccaga 645
                ||||||||  ||||||||| ||||| || || ||||||||
Sbjct: 10822428 tttctgtgcagttggcatgttggccaccaggaccaccaga 10822389



 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 78/89 (87%)
 Strand = Plus / Minus

                                                                            
Query: 308      atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
                ||||||||||||||||| || |  ||||||||||| || || || ||||| |||||||||
Sbjct: 10823364 atgaaatcatctaggtccccattgaggactgaatcagggtcggatacttcgtagtttgtc 10823305

                                             
Query: 368      cggagatctttgaccattcggtatggctg 396
                ||||||||||||||||| || ||||||||
Sbjct: 10823304 cggagatctttgaccatacgatatggctg 10823276
to top
>ref|NM_104515.2| Arabidopsis thaliana translation release factor/ translation release
            factor, codon specific AT1G56350 mRNA, complete cds
          Length = 1511

 Score =  109 bits (55), Expect = 1e-20
 Identities = 115/135 (85%)
 Strand = Plus / Minus

                                                                        
Query: 515  gccattgctgatgccctattcatatgttgtgacctttcattttgacaagttgccgttgta 574
            ||||||||||| ||| | ||  ||||||||||||||||||| ||||||||||| ||| | 
Sbjct: 1255 gccattgctgaagccttgttactatgttgtgacctttcattctgacaagttgctgttatg 1196

                                                                        
Query: 575  ccagttgggatgtgcacaattctaacagcactttctgtggtgttggcatgctggccgccg 634
            |||||||| ||||| || |||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 1195 ccagttggtatgtgaacgattctaacagcactgtctgtcgtgttagcgtgctgcccaccg 1136

                           
Query: 635  ggtccaccagaacgg 649
            | ||| |||||||||
Sbjct: 1135 gctcctccagaacgg 1121



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 98/122 (80%)
 Strand = Plus / Minus

                                                                        
Query: 308  atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
            |||||| |||||| ||| ||||| || || || || |||||||| || || ||||| || 
Sbjct: 1462 atgaaaccatctaagtctccttcaagaaccgagtcaggatcagagacctcgtagttggtt 1403

                                                                        
Query: 368  cggagatctttgaccattcggtatggctgtagcacatacgatcttatttggtttccccag 427
            || ||||| || ||||||| |||||| || || ||||| | || ||| ||||||||||||
Sbjct: 1402 cgcagatccttcaccattctgtatggatggagaacataagttcgtatctggtttccccag 1343

              
Query: 428  ct 429
            ||
Sbjct: 1342 ct 1341
to top
>gb|AY090252.1| Arabidopsis thaliana At1g56350/F14G9_3 mRNA sequence
          Length = 1615

 Score =  109 bits (55), Expect = 1e-20
 Identities = 115/135 (85%)
 Strand = Plus / Minus

                                                                        
Query: 515  gccattgctgatgccctattcatatgttgtgacctttcattttgacaagttgccgttgta 574
            ||||||||||| ||| | ||  ||||||||||||||||||| ||||||||||| ||| | 
Sbjct: 1289 gccattgctgaagccttgttactatgttgtgacctttcattctgacaagttgctgttatg 1230

                                                                        
Query: 575  ccagttgggatgtgcacaattctaacagcactttctgtggtgttggcatgctggccgccg 634
            |||||||| ||||| || |||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 1229 ccagttggtatgtgaacgattctaacagcactgtctgtcgtgttagcgtgctgcccaccg 1170

                           
Query: 635  ggtccaccagaacgg 649
            | ||| |||||||||
Sbjct: 1169 gctcctccagaacgg 1155



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 98/122 (80%)
 Strand = Plus / Minus

                                                                        
Query: 308  atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
            |||||| |||||| ||| ||||| || || || || |||||||| || || ||||| || 
Sbjct: 1496 atgaaaccatctaagtctccttcaagaaccgagtcaggatcagagacctcgtagttggtt 1437

                                                                        
Query: 368  cggagatctttgaccattcggtatggctgtagcacatacgatcttatttggtttccccag 427
            || ||||| || ||||||| |||||| || || ||||| | || ||| ||||||||||||
Sbjct: 1436 cgcagatccttcaccattctgtatggatggagaacataagttcgtatctggtttccccag 1377

              
Query: 428  ct 429
            ||
Sbjct: 1376 ct 1375
to top
>emb|BX816417.1|CNS0ABWP Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH47ZB11 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1639

 Score =  109 bits (55), Expect = 1e-20
 Identities = 115/135 (85%)
 Strand = Plus / Minus

                                                                        
Query: 515  gccattgctgatgccctattcatatgttgtgacctttcattttgacaagttgccgttgta 574
            ||||||||||| ||| | ||  ||||||||||||||||||| ||||||||||| ||| | 
Sbjct: 1235 gccattgctgaagccttgttactatgttgtgacctttcattctgacaagttgctgttatg 1176

                                                                        
Query: 575  ccagttgggatgtgcacaattctaacagcactttctgtggtgttggcatgctggccgccg 634
            |||||||| ||||| || |||||||||||||| ||||| ||||| || ||||| || |||
Sbjct: 1175 ccagttggtatgtgaacgattctaacagcactgtctgtcgtgttagcgtgctgcccaccg 1116

                           
Query: 635  ggtccaccagaacgg 649
            | ||| |||||||||
Sbjct: 1115 gctcctccagaacgg 1101



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 98/122 (80%)
 Strand = Plus / Minus

                                                                        
Query: 308  atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
            |||||| |||||| ||| ||||| || || || || |||||||| || || ||||| || 
Sbjct: 1442 atgaaaccatctaagtctccttcaagaaccgagtcaggatcagagacctcgtagttggtt 1383

                                                                        
Query: 368  cggagatctttgaccattcggtatggctgtagcacatacgatcttatttggtttccccag 427
            || ||||| || ||||||| |||||| || || ||||| | || ||| ||||||||||||
Sbjct: 1382 cgcagatccttcaccattctgtatggatggagaacataagttcgtatctggtttccccag 1323

              
Query: 428  ct 429
            ||
Sbjct: 1322 ct 1321
to top
>gb|AC058785.8|AC058785 Arabidopsis thaliana chromosome 1 BAC F13N6 genomic sequence,
            complete sequence
          Length = 90698

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Minus

                                                                        
Query: 545  gacctttcattttgacaagttgccgttgtaccagttgggatgtgcacaattctaacagca 604
            ||||||||||| ||||||||||| ||| | |||||||| ||||| || ||||||||||||
Sbjct: 7360 gacctttcattctgacaagttgctgttatgccagttggtatgtgaacgattctaacagca 7301

                                                         
Query: 605  ctttctgtggtgttggcatgctggccgccgggtccaccagaacgg 649
            || ||||| ||||| || ||||| || |||| ||| |||||||||
Sbjct: 7300 ctgtctgtcgtgttagcgtgctgcccaccggctcctccagaacgg 7256
to top
>gb|AC069159.8|AC069159 Arabidopsis thaliana chromosome 1 BAC F14G9 genomic sequence, complete
             sequence
          Length = 111481

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 90/105 (85%)
 Strand = Plus / Plus

                                                                         
Query: 545   gacctttcattttgacaagttgccgttgtaccagttgggatgtgcacaattctaacagca 604
             ||||||||||| ||||||||||| ||| | |||||||| ||||| || ||||||||||||
Sbjct: 10871 gacctttcattctgacaagttgctgttatgccagttggtatgtgaacgattctaacagca 10930

                                                          
Query: 605   ctttctgtggtgttggcatgctggccgccgggtccaccagaacgg 649
             || ||||| ||||| || ||||| || |||| ||| |||||||||
Sbjct: 10931 ctgtctgtcgtgttagcgtgctgcccaccggctcctccagaacgg 10975
to top
>emb|BX248356.1| Corynebacterium diphtheriae gravis NCTC13129, complete genome; segment
             3/8
          Length = 347625

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 59/71 (83%)
 Strand = Plus / Minus

                                                                         
Query: 356   tcatagtttgtccggagatctttgaccattcggtatggctgtagcacatacgatcttatt 415
             ||||||||||| || |||||||| |||||| | ||||| || |||||||| || |  |||
Sbjct: 32980 tcatagtttgtacgcagatcttttaccatttgatatgggtgcagcacataggagcgcatt 32921

                        
Query: 416   tggtttcccca 426
             ||||| |||||
Sbjct: 32920 tggttgcccca 32910
to top
>ref|NM_130270.3| Arabidopsis thaliana translation release factor/ translation release
            factor, codon specific AT2G47020 transcript variant
            AT2G47020.1 mRNA, complete cds
          Length = 1758

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 533  ttcatatgttgtgacctttcat 554
            ||||||||||||||||||||||
Sbjct: 1064 ttcatatgttgtgacctttcat 1043
to top
>ref|NM_201977.1| Arabidopsis thaliana translation release factor/ translation release
            factor, codon specific AT2G47020 transcript variant
            AT2G47020.2 mRNA, complete cds
          Length = 1763

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 533  ttcatatgttgtgacctttcat 554
            ||||||||||||||||||||||
Sbjct: 1069 ttcatatgttgtgacctttcat 1048
to top
>gb|AC127375.3| Mus musculus chromosome UNKNOWN clone RP23-48J17, complete sequence
          Length = 160811

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 485    tcaagctggtccaatctagatt 506
              ||||||||||||||||||||||
Sbjct: 106879 tcaagctggtccaatctagatt 106900
to top
>ref|XM_663281.1| Cryptosporidium hominis TU502 protein kinase domain (Chro.10319)
            partial mRNA
          Length = 3468

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 264  cactttcatcaactttatccaa 285
            ||||||||||||||||||||||
Sbjct: 3181 cactttcatcaactttatccaa 3160
to top
>gb|AY046045.1| Arabidopsis thaliana At3g30140 mRNA sequence
          Length = 1322

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 97/122 (79%)
 Strand = Plus / Minus

                                                                        
Query: 308  atgaaatcatctaggtcgccttccaggactgaatcgggatcagacacttcatagtttgtc 367
            |||||| |||||| ||| ||||| || || || || |||||||| || || |||||||| 
Sbjct: 1107 atgaaaccatctaagtctccttcaagaaccgagtcaggatcagagacctcgtagtttgtt 1048

                                                                        
Query: 368  cggagatctttgaccattcggtatggctgtagcacatacgatcttatttggtttccccag 427
            |  ||||| || ||||||| |||| | || || ||||| | || ||| ||||||||||||
Sbjct: 1047 ctcagatccttcaccattctgtattgatggagaacataagttcgtatctggtttccccag 988

              
Query: 428  ct 429
            ||
Sbjct: 987  ct 986
to top
>gb|AE004959.1| Pseudomonas aeruginosa PAO1, section 520 of 529 of the complete
            genome
          Length = 10871

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 611  gtggtgttggcatgctggccgccggg 636
            ||||||||| ||||||||||||||||
Sbjct: 7982 gtggtgttgacatgctggccgccggg 8007
to top
>emb|BX539333.2| Mouse DNA sequence from clone RP23-138J24 on chromosome X, complete
              sequence
          Length = 212455

 Score = 44.1 bits (22), Expect = 0.58
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 485    tcaagctggtccaatctagatt 506
              ||||||||||||||||||||||
Sbjct: 170658 tcaagctggtccaatctagatt 170679
to top
>ref|XM_364069.1| Magnaporthe grisea 70-15 hypothetical protein (MG08914.4) partial
            mRNA
          Length = 3282

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 371  agatctttgaccattcggtat 391
            |||||||||||||||||||||
Sbjct: 3230 agatctttgaccattcggtat 3210
to top
>emb|CT025568.7| Mouse DNA sequence from clone RP23-374L19 on chromosome 9, complete
             sequence
          Length = 183916

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 161   tgtatttgtcagagtagtaaagaaa 185
             ||||||||||||| |||||||||||
Sbjct: 30622 tgtatttgtcagactagtaaagaaa 30646
to top
>emb|AL929288.4| Human DNA sequence from clone RP11-669M2 on chromosome 1 Contains the
             3' end of a novel gene and apolipoprotein L 3 (APOL3)
             pseudogene, complete sequence
          Length = 172898

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 249   tggtttttcttcagacacttt 269
             |||||||||||||||||||||
Sbjct: 20167 tggtttttcttcagacacttt 20147
to top
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 537    tatgttgtgacctttcattttgaca 561
              |||||||||| ||||||||||||||
Sbjct: 716917 tatgttgtgatctttcattttgaca 716893
to top
>gb|AC155925.2| Mus musculus BAC clone RP24-248C21 from 9, complete sequence
          Length = 171521

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 161    tgtatttgtcagagtagtaaagaaa 185
              ||||||||||||| |||||||||||
Sbjct: 128667 tgtatttgtcagactagtaaagaaa 128691
to top
>ref|XM_420431.1| PREDICTED: Gallus gallus similar to U6 snRNA-associated Sm-like
           protein LSm6 (Sm protein F) (LOC422466), mRNA
          Length = 2047

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 606 tttctgtggtgttggcatgctggc 629
           |||||||||||||||| |||||||
Sbjct: 636 tttctgtggtgttggcctgctggc 613
to top
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome
          Length = 5178466

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 559     acaagttgccgttgtaccag 578
               ||||||||||||||||||||
Sbjct: 2782946 acaagttgccgttgtaccag 2782965
to top
>emb|CR318659.26| Zebrafish DNA sequence from clone CH211-215M5 in linkage group 17,
              complete sequence
          Length = 167230

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 597    taacagcactttctgtggtg 616
              ||||||||||||||||||||
Sbjct: 115886 taacagcactttctgtggtg 115867
to top
>ref|XM_448331.1| Candida glabrata CBS138, CAGL0K02431g partial mRNA
          Length = 2775

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 266  ctttcatcaactttatccaa 285
            ||||||||||||||||||||
Sbjct: 2117 ctttcatcaactttatccaa 2098
to top
>emb|CR718030.2|CNS0GGZ8 Tetraodon nigroviridis full-length cDNA
          Length = 723

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 166 cgttgtatttgtcagaatagtaaa 143
to top
>emb|CR717946.2|CNS0GGWW Tetraodon nigroviridis full-length cDNA
          Length = 714

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 157 cgttgtatttgtcagaatagtaaa 134
to top
>emb|CR715191.2|CNS0GESJ Tetraodon nigroviridis full-length cDNA
          Length = 727

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 170 cgttgtatttgtcagaatagtaaa 147
to top
>emb|CR715154.2|CNS0GERI Tetraodon nigroviridis full-length cDNA
          Length = 616

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 112 cgttgtatttgtcagaatagtaaa 89
to top
>emb|CR711518.2|CNS0GBYI Tetraodon nigroviridis full-length cDNA
          Length = 714

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 157 cgttgtatttgtcagaatagtaaa 134
to top
>emb|CR714145.2|CNS0GDZH Tetraodon nigroviridis full-length cDNA
          Length = 714

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 157 cgttgtatttgtcagaatagtaaa 134
to top
>emb|CR714049.2|CNS0GDWT Tetraodon nigroviridis full-length cDNA
          Length = 702

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 145 cgttgtatttgtcagaatagtaaa 122
to top
>emb|CR710150.2|CNS0GAWI Tetraodon nigroviridis full-length cDNA
          Length = 742

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 185 cgttgtatttgtcagaatagtaaa 162
to top
>emb|CR709990.2|CNS0GAS2 Tetraodon nigroviridis full-length cDNA
          Length = 645

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 170 cgttgtatttgtcagaatagtaaa 147
to top
>emb|CR708975.2|CNS0G9ZV Tetraodon nigroviridis full-length cDNA
          Length = 666

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 109 cgttgtatttgtcagaatagtaaa 86
to top
>emb|CR707643.2|CNS0G8YV Tetraodon nigroviridis full-length cDNA
          Length = 606

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 48  cgttgtatttgtcagaatagtaaa 25
to top
>emb|CR706991.2|CNS0G8GR Tetraodon nigroviridis full-length cDNA
          Length = 688

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 131 cgttgtatttgtcagaatagtaaa 108
to top
>emb|CR706677.2|CNS0G881 Tetraodon nigroviridis full-length cDNA
          Length = 705

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 148 cgttgtatttgtcagaatagtaaa 125
to top
>emb|CR706158.2|CNS0G7TM Tetraodon nigroviridis full-length cDNA
          Length = 727

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 158 cgttgtatttgtcagagtagtaaa 181
           |||||||||||||||| |||||||
Sbjct: 170 cgttgtatttgtcagaatagtaaa 147
to top
>emb|CR380957.1| Candida glabrata strain CBS138 chromosome K complete sequence
          Length = 1302002

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 266    ctttcatcaactttatccaa 285
              ||||||||||||||||||||
Sbjct: 219685 ctttcatcaactttatccaa 219704
to top
>gb|AF391292.1| Branchiostoma floridae cosmid MPMGc117N2261, partial sequence
          Length = 45750

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 605   ctttctgtggtgttggcatg 624
             ||||||||||||||||||||
Sbjct: 43767 ctttctgtggtgttggcatg 43786
to top
>gb|AC004411.3| Arabidopsis thaliana chromosome 2 clone F14M4 map CIC06C03, complete
             sequence
          Length = 106329

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 535   catatgttgtgacctttcat 554
             ||||||||||||||||||||
Sbjct: 39036 catatgttgtgacctttcat 39017
to top
>gb|AC091805.16| Homo sapiens 12p BAC RP11-841C19 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 177115

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 241    gatagacatggtttttcttc 260
              ||||||||||||||||||||
Sbjct: 100114 gatagacatggtttttcttc 100133
to top
>gb|AF419552.1|AF419552 Arabidopsis thaliana At2g47020/F14M4.15 mRNA sequence
          Length = 1247

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 535 catatgttgtgacctttcat 554
           ||||||||||||||||||||
Sbjct: 763 catatgttgtgacctttcat 782
to top
>gb|AE014133.1| Streptococcus mutans UA159, complete genome
          Length = 2030921

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                               
Query: 353     acttcatagtttgtccggagatctttgaccat 384
               |||||||||||||||||  ||||||| |||||
Sbjct: 1249722 acttcatagtttgtccgatgatctttcaccat 1249753
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 620     gcatgctggccgccgggtccacca 643
               |||||||||||| |||||||||||
Sbjct: 2494612 gcatgctggccggcgggtccacca 2494635
to top
>gb|AC159234.2| Mus musculus BAC clone RP24-432D6 from chromosome 12, complete sequence
          Length = 152905

 Score = 40.1 bits (20), Expect = 9.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 192   cttactgttagttgggcact 211
             ||||||||||||||||||||
Sbjct: 96147 cttactgttagttgggcact 96128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,835,927
Number of Sequences: 3902068
Number of extensions: 5835927
Number of successful extensions: 100161
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 99927
Number of HSP's gapped (non-prelim): 234
length of query: 664
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 641
effective length of database: 17,143,297,704
effective search space: 10988853828264
effective search space used: 10988853828264
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top