ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62i21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MLTE_BUCAI (P57352) Membrane-bound lytic murein transglycosylase... 28 6.5
2ECR_CHITE (P49882) Ecdysone receptor (Ecdysteroid receptor) (20-... 28 6.5
3Y316_MYCGE (P47558) Hypothetical protein MG316 28 8.4

>MLTE_BUCAI (P57352) Membrane-bound lytic murein transglycosylase E (EC|
           3.2.1.-) (Murein hydrolase E)
          Length = 221

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = -2

Query: 120 LGTISFVFFLCCKSISLKGAVIFEYFFAS*YLNGTNILL 4
           +GT S++ FL  K IS+K   +  Y     Y+NGT+ LL
Sbjct: 146 IGT-SYISFLQKKFISIKNKDVMRYAIIVAYVNGTSALL 183



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>ECR_CHITE (P49882) Ecdysone receptor (Ecdysteroid receptor)|
           (20-hydroxy-ecdysone receptor) (20E receptor) (EcRH)
          Length = 536

 Score = 28.1 bits (61), Expect = 6.5
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = +1

Query: 52  ENNCSLKRNAFAAEEENKRDCTQGMMGDNQSSKIYNGKSL 171
           EN C++KR    A++E  +D   G++G N SS     +SL
Sbjct: 188 ENQCAIKRKEKKAQKE--KDKVPGIVGSNTSSSSLLNQSL 225



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>Y316_MYCGE (P47558) Hypothetical protein MG316|
          Length = 369

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 219 FFFLLQHRVFKQKRSK*GLSVVYFATLVVSHHTLGTISFVF-FLCC 85
           F   L  +VFK++  +  LS+     +++S+H L    F F FL C
Sbjct: 175 FISTLLKQVFKKQLPEDNLSLTALLIILISNHALNNFGFNFSFLAC 220


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,835,984
Number of Sequences: 219361
Number of extensions: 458894
Number of successful extensions: 1290
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1283
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1290
length of database: 80,573,946
effective HSP length: 48
effective length of database: 70,044,618
effective search space used: 1681070832
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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