ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62i19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1C71DB_LOTJA (O22307) Cytochrome P450 71D11 (EC 1.14.-.-) (Fragment) 29 2.4
2C71C4_MAIZE (Q43257) Cytochrome P450 71C4 (EC 1.14.-.-) (Benzoxa... 29 3.2
3C71BC_ARATH (Q9ZU07) Cytochrome P450 71B12 (EC 1.14.-.-) 28 4.2
4RGYR2_AQUAE (O67226) Reverse gyrase 2 [Includes: Helicase (EC 3.... 28 5.4
5C71BB_ARATH (P58049) Cytochrome P450 71B11 (EC 1.14.-.-) 28 7.1
6SRG15_CAEEL (Q18428) Serpentine receptor class gamma-15 (Protein... 27 9.3
7CFTR_MOUSE (P26361) Cystic fibrosis transmembrane conductance re... 27 9.3

>C71DB_LOTJA (O22307) Cytochrome P450 71D11 (EC 1.14.-.-) (Fragment)|
          Length = 490

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
 Frame = -3

Query: 371 GDKLSSFDMSEKFGLTVSRRYDLQLKP-ITH 282
           G K    D++E+FG+TVS++ DL L P I+H
Sbjct: 455 GIKNEDLDLTEEFGVTVSKKEDLCLIPSISH 485



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>C71C4_MAIZE (Q43257) Cytochrome P450 71C4 (EC 1.14.-.-) (Benzoxazineless 2)|
          Length = 538

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 371 GDKLSSFDMSEKFGLTVSRRYDLQLKP 291
           G K    DM+E FG+TVSR+  L L P
Sbjct: 509 GMKAEDVDMTEVFGITVSRKEKLLLVP 535



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>C71BC_ARATH (Q9ZU07) Cytochrome P450 71B12 (EC 1.14.-.-)|
          Length = 496

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -3

Query: 371 GDKLSSFDMSEKFGLTVSRRYDLQLKPITHVWS 273
           G K++  D+ E +GL   ++  LQL P+   W+
Sbjct: 464 GMKVADVDLEESYGLVCPKKIPLQLIPVLTQWT 496



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>RGYR2_AQUAE (O67226) Reverse gyrase 2 [Includes: Helicase (EC 3.6.1.-);|
           Topoisomerase (EC 5.99.1.3)]
          Length = 1159

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 190 YVLKVKVPEHAFPCEYTSSPRHLYGIAL 273
           Y + +  P+H FP E T SP  L+G+ L
Sbjct: 385 YAVFLDPPKHVFPTELTLSPPLLHGLLL 412



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>C71BB_ARATH (P58049) Cytochrome P450 71B11 (EC 1.14.-.-)|
          Length = 496

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 371 GDKLSSFDMSEKFGLTVSRRYDLQLKPITHVWS 273
           G ++   D+ E +GL   ++  LQL P+   WS
Sbjct: 464 GMEVEDVDLEESYGLVCPKKVPLQLIPVLTQWS 496



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>SRG15_CAEEL (Q18428) Serpentine receptor class gamma-15 (Protein srg-15)|
          Length = 320

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 23/90 (25%), Positives = 40/90 (44%), Gaps = 10/90 (11%)
 Frame = -1

Query: 292 LLHMCGPMLCHTSDAGSLCIHMEMHVQVLSPLAHIIIVVN--GCIFMQ*H--------KK 143
           L  + GP    +S    +  ++ +H ++   +AHI +V+N   C+ M  +         K
Sbjct: 91  LCPIVGPFFWASSLIPKIYFYLSVHTRLSKCVAHICMVLNRMTCVLMPTYYGQIWRKLTK 150

Query: 142 SSLQTLCIAFTKPFWYCNVHDRIYYVVRSY 53
            SL  +CI      W   +  R +YV+ SY
Sbjct: 151 VSLVIICILPLGGTWNIIISPR-FYVLPSY 179



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>CFTR_MOUSE (P26361) Cystic fibrosis transmembrane conductance regulator (CFTR)|
            (cAMP-dependent chloride channel) (ATP-binding cassette
            transporter sub-family C member 7)
          Length = 1476

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 18/60 (30%), Positives = 30/60 (50%)
 Frame = -2

Query: 273  QCYAIQVTRGACVFTWKCMFRYFHL*HISLLL*MVVSLCNSIRKVHCKHYVLHLLNHSGI 94
            +C+   V +   V TW    RYF L H  LLL ++  +   + +V    +VL LL ++ +
Sbjct: 826  ECFLDDVIKIPPVTTWNTYLRYFTL-HKGLLLVLIWCVLVFLVEVAASLFVLWLLKNNPV 884


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,289,233
Number of Sequences: 219361
Number of extensions: 1068299
Number of successful extensions: 1995
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1995
length of database: 80,573,946
effective HSP length: 99
effective length of database: 58,857,207
effective search space used: 1412572968
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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