ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62i19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AB036772.1| Triticum aestivum N-1 mRNA for cytochrome P450, ... 50 0.005
2emb|AL391867.5| Human DNA sequence from clone RP11-402M4 on chro... 44 0.32
3gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 42 1.3
4gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 42 1.3
5gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 42 1.3
6gb|CP000001.1| Bacillus cereus E33L, complete genome 42 1.3
7ref|XM_395705.2| PREDICTED: Apis mellifera similar to CG18497-PA... 42 1.3
8gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 42 1.3
9gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 42 1.3
10gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 42 1.3
11gb|AC124778.4| Mus musculus BAC clone RP23-92N3 from 9, complete... 42 1.3
12gb|DQ452068.1| Homo sapiens lipoprotein, Lp(a) (LPA) gene, compl... 40 5.0
13gb|AE013182.1| Thermoanaerobacter tengcongensis MB4, section 209... 40 5.0
14gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosom... 40 5.0
15emb|Z70757.1|CEZK287 Caenorhabditis elegans Cosmid ZK287, comple... 40 5.0
16gb|AC122347.4| Mus musculus BAC clone RP23-368O1 from chromosome... 40 5.0
17gb|AC091505.2| Sus scrofa clone RP44-331G21, complete sequence 40 5.0
18ref|XM_669095.1| Plasmodium berghei strain ANKA hypothetical pro... 40 5.0
19emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chr... 40 5.0
20emb|AL645485.7| Human DNA sequence from clone RP11-255G20 on chr... 40 5.0
21emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chr... 40 5.0
22gb|AC158590.3| Mus musculus chromosome 5, clone RP24-388K6, comp... 40 5.0
23emb|X65047.1|ASATBETHE A.salmonicida (strain ATCC14174) DNA sequ... 40 5.0
24dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromo... 40 5.0
25gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complet... 40 5.0
26gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, comple... 40 5.0
27emb|AL929594.17| Zebrafish DNA sequence from clone CH211-196L2 i... 40 5.0
28gb|AF092034.1|AF092034 Aeromonas hydrophila phospholipase C (plc... 40 5.0
29dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP... 40 5.0
30dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene o... 40 5.0

>dbj|AB036772.1| Triticum aestivum N-1 mRNA for cytochrome P450, complete cds
          Length = 1957

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                         
Query: 264  catagcattggaccacacatgtgtaatag 292
            ||||||||||||||||||||||| |||||
Sbjct: 1617 catagcattggaccacacatgtggaatag 1589



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 155  ttgcataaagatacaaccat 174
            ||||||||||||||||||||
Sbjct: 1735 ttgcataaagatacaaccat 1716



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>emb|AL391867.5| Human DNA sequence from clone RP11-402M4 on chromosome 9, complete
             sequence
          Length = 164444

 Score = 44.1 bits (22), Expect = 0.32
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 94    aataccagaatggtttagtaaa 115
             ||||||||||||||||||||||
Sbjct: 51370 aataccagaatggtttagtaaa 51349



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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 4974372 gtaaatgcaatacataatgtt 4974392



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>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 4968514 gtaaatgcaatacataatgtt 4968534



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>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 4969725 gtaaatgcaatacataatgtt 4969745



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>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 5029652 gtaaatgcaatacataatgtt 5029672



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>ref|XM_395705.2| PREDICTED: Apis mellifera similar to CG18497-PA, isoform A
            (LOC412243), partial mRNA
          Length = 12083

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 205  aaagtacctgaacatgcatttccat 229
            |||||||||||||||||| ||||||
Sbjct: 1339 aaagtacctgaacatgcagttccat 1363



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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 5147425 gtaaatgcaatacataatgtt 5147445



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>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 4968388 gtaaatgcaatacataatgtt 4968408



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>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 111     gtaaatgcaatacataatgtt 131
               |||||||||||||||||||||
Sbjct: 4946150 gtaaatgcaatacataatgtt 4946170



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>gb|AC124778.4| Mus musculus BAC clone RP23-92N3 from 9, complete sequence
          Length = 138531

 Score = 42.1 bits (21), Expect = 1.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 128   tgtttgcaatgaacttttctt 148
             |||||||||||||||||||||
Sbjct: 62992 tgtttgcaatgaacttttctt 63012



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>gb|DQ452068.1| Homo sapiens lipoprotein, Lp(a) (LPA) gene, complete cds
          Length = 136345

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 53756 atgcatttgcatgtgaatacacaa 53779



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 48204 atgcatttgcatgtgaatacacaa 48227



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 42658 atgcatttgcatgtgaatacacaa 42681



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 37114 atgcatttgcatgtgaatacacaa 37137



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 31565 atgcatttgcatgtgaatacacaa 31588



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 26022 atgcatttgcatgtgaatacacaa 26045



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 20474 atgcatttgcatgtgaatacacaa 20497



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>gb|AE013182.1| Thermoanaerobacter tengcongensis MB4, section 209 of 244 of the
            complete genome
          Length = 8607

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   tactacataatatattctat 81
            ||||||||||||||||||||
Sbjct: 6177 tactacataatatattctat 6158



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>gb|AC129605.4| Mus musculus BAC clone RP23-121N17 from chromosome 7, complete sequence
          Length = 232568

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 280    acatgtgtaataggtttaag 299
              ||||||||||||||||||||
Sbjct: 156663 acatgtgtaataggtttaag 156644



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>emb|Z70757.1|CEZK287 Caenorhabditis elegans Cosmid ZK287, complete sequence
          Length = 39874

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 24   aactatacctaactacacaa 43
            ||||||||||||||||||||
Sbjct: 6502 aactatacctaactacacaa 6521



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>gb|AC122347.4| Mus musculus BAC clone RP23-368O1 from chromosome 5, complete sequence
          Length = 191186

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 331    ccaaacttctcagacatgtc 350
              ||||||||||||||||||||
Sbjct: 141279 ccaaacttctcagacatgtc 141260



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>gb|AC091505.2| Sus scrofa clone RP44-331G21, complete sequence
          Length = 188095

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 206    aagtacctgaacatgcattt 225
              ||||||||||||||||||||
Sbjct: 126401 aagtacctgaacatgcattt 126420



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>ref|XM_669095.1| Plasmodium berghei strain ANKA hypothetical protein (PB000631.01.0)
           partial mRNA
          Length = 1371

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 140 acttttcttatgctattgca 159
           ||||||||||||||||||||
Sbjct: 368 acttttcttatgctattgca 349



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>emb|AL691420.13| Human DNA sequence from clone RP11-352C6 on chromosome 9, complete
              sequence
          Length = 175726

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 303    caagtcatatctcctgctta 322
              ||||||||||||||||||||
Sbjct: 161232 caagtcatatctcctgctta 161213



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>emb|AL645485.7| Human DNA sequence from clone RP11-255G20 on chromosome 1 Contains the
             5' end of the PLA2G5 gene for phospholipase A2 group V,
             complete sequence
          Length = 42478

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 198   aaaggtgaaagtacctgaacatgc 221
             |||||||||||||||||| |||||
Sbjct: 36318 aaaggtgaaagtacctgaccatgc 36341



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>emb|AL596089.19| Human DNA sequence from clone RP11-414A5 on chromosome 6 Contains the 3'
              end of the LPA gene for lipoprotein (Lp(a)) and a CpG
              island, complete sequence
          Length = 135751

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    atgcatttccatgtgaatacacaa 241
              |||||||| |||||||||||||||
Sbjct: 130502 atgcatttgcatgtgaatacacaa 130479



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    atgcatttccatgtgaatacacaa 241
              |||||||| |||||||||||||||
Sbjct: 124954 atgcatttgcatgtgaatacacaa 124931



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    atgcatttccatgtgaatacacaa 241
              |||||||| |||||||||||||||
Sbjct: 119411 atgcatttgcatgtgaatacacaa 119388



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    atgcatttccatgtgaatacacaa 241
              |||||||| |||||||||||||||
Sbjct: 113862 atgcatttgcatgtgaatacacaa 113839



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    atgcatttccatgtgaatacacaa 241
              |||||||| |||||||||||||||
Sbjct: 108318 atgcatttgcatgtgaatacacaa 108295



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 218    atgcatttccatgtgaatacacaa 241
              |||||||| |||||||||||||||
Sbjct: 102772 atgcatttgcatgtgaatacacaa 102749



 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 218   atgcatttccatgtgaatacacaa 241
             |||||||| |||||||||||||||
Sbjct: 97220 atgcatttgcatgtgaatacacaa 97197



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>gb|AC158590.3| Mus musculus chromosome 5, clone RP24-388K6, complete sequence
          Length = 186514

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   ccaaacttctcagacatgtc 350
             ||||||||||||||||||||
Sbjct: 97268 ccaaacttctcagacatgtc 97249



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>emb|X65047.1|ASATBETHE A.salmonicida (strain ATCC14174) DNA sequence for beta-hemolysin
          Length = 2869

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 tacaaccattcacaacaata 185
           ||||||||||||||||||||
Sbjct: 441 tacaaccattcacaacaata 460



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>dbj|BA000032.2| Vibrio parahaemolyticus RIMD 2210633 DNA, chromosome 2, complete sequence
          Length = 1877212

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 132    tgcaatgaacttttcttatg 151
              ||||||||||||||||||||
Sbjct: 864277 tgcaatgaacttttcttatg 864258



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>gb|AC092642.2| Homo sapiens BAC clone RP11-391P1 from 2, complete sequence
          Length = 152251

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 182    aataatgatatgtgctaaag 201
              ||||||||||||||||||||
Sbjct: 122434 aataatgatatgtgctaaag 122453



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>gb|AC098590.3| Homo sapiens BAC clone RP11-324J13 from 4, complete sequence
          Length = 157544

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 65    tacataatatattctatcat 84
             ||||||||||||||||||||
Sbjct: 63176 tacataatatattctatcat 63195



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>emb|AL929594.17| Zebrafish DNA sequence from clone CH211-196L2 in linkage group 19,
             complete sequence
          Length = 188746

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 114   aatgcaatacataatgtttgcaat 137
             ||||||||||| ||||||||||||
Sbjct: 68895 aatgcaatacaaaatgtttgcaat 68918



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>gb|AF092034.1|AF092034 Aeromonas hydrophila phospholipase C (plc) gene, complete cds
          Length = 2868

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 166 tacaaccattcacaacaata 185
           ||||||||||||||||||||
Sbjct: 440 tacaaccattcacaacaata 459



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>dbj|AP006210.1| Homo sapiens genomic DNA, chromosome 9, clone:RP11-449F3, complete
             sequence
          Length = 165755

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   caagtcatatctcctgctta 322
             ||||||||||||||||||||
Sbjct: 63287 caagtcatatctcctgctta 63268



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>dbj|AB020873.1| Homo sapiens genomic DNA of 9q32 anti-oncogene of flat epitherium
             cancer , segment 5/10
          Length = 100000

 Score = 40.1 bits (20), Expect = 5.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   caagtcatatctcctgctta 322
             ||||||||||||||||||||
Sbjct: 11048 caagtcatatctcctgctta 11029


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,694,808
Number of Sequences: 3902068
Number of extensions: 3694808
Number of successful extensions: 68581
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 68383
Number of HSP's gapped (non-prelim): 198
length of query: 373
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 351
effective length of database: 17,147,199,772
effective search space: 6018667119972
effective search space used: 6018667119972
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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