ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62i15 |
|---|---|
| Clone Library Name | barley_pub |
>FAD6E_BRAJU (Q39287) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 384 Score = 120 bits (301), Expect(2) = 2e-28 Identities = 54/67 (80%), Positives = 59/67 (88%), Gaps = 3/67 (4%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVEPE---DRKG 385 VAHHLFS MPHYHAME TKAIKPILG+YYQFDGTP KA WREAKECIYVEP+ ++KG Sbjct: 317 VAHHLFSTMPHYHAMEVTKAIKPILGDYYQFDGTPWVKAMWREAKECIYVEPDRQGEKKG 376 Query: 384 VFWYSNK 364 VFWY+NK Sbjct: 377 VFWYNNK 383 Score = 24.6 bits (52), Expect(2) = 2e-28 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 583 VFHNITDTH 557 VFHNITDTH Sbjct: 308 VFHNITDTH 316
>FD6E2_SOYBN (P48631) Omega-6 fatty acid desaturase, endoplasmic reticulum| isozyme 2 (EC 1.14.19.-) Length = 383 Score = 117 bits (292), Expect(2) = 2e-27 Identities = 53/67 (79%), Positives = 58/67 (86%), Gaps = 3/67 (4%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVEPE---DRKG 385 VAHHLFS MPHYHAMEATKAIKPILGEYY+FD TP KA WREA+ECIYVEP+ + KG Sbjct: 316 VAHHLFSTMPHYHAMEATKAIKPILGEYYRFDETPFVKAMWREARECIYVEPDQSTESKG 375 Query: 384 VFWYSNK 364 VFWY+NK Sbjct: 376 VFWYNNK 382 Score = 24.6 bits (52), Expect(2) = 2e-27 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 583 VFHNITDTH 557 VFHNITDTH Sbjct: 307 VFHNITDTH 315
>FD6E1_SOYBN (P48630) Omega-6 fatty acid desaturase, endoplasmic reticulum| isozyme 1 (EC 1.14.19.-) Length = 387 Score = 115 bits (287), Expect(2) = 3e-26 Identities = 51/68 (75%), Positives = 57/68 (83%), Gaps = 3/68 (4%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVEPED---RKG 385 VAHHLFS MPHYHAMEAT AIKPILGEYYQFD TP KA WREA+EC+YVEP++ KG Sbjct: 320 VAHHLFSTMPHYHAMEATNAIKPILGEYYQFDDTPFYKALWREARECLYVEPDEGTSEKG 379 Query: 384 VFWYSNKF 361 V+WY NK+ Sbjct: 380 VYWYRNKY 387 Score = 22.7 bits (47), Expect(2) = 3e-26 Identities = 8/9 (88%), Positives = 9/9 (100%) Frame = -1 Query: 583 VFHNITDTH 557 VFH+ITDTH Sbjct: 311 VFHHITDTH 319
>FAD6E_ARATH (P46313) Omega-6 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Delta-12 desaturase) Length = 383 Score = 112 bits (281), Expect(2) = 4e-26 Identities = 52/67 (77%), Positives = 59/67 (88%), Gaps = 3/67 (4%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVEPE---DRKG 385 VAHHLFS MPHY+AMEATKAIKPILG+YYQFDGTP A +REAKECIYVEP+ D+KG Sbjct: 316 VAHHLFSTMPHYNAMEATKAIKPILGDYYQFDGTPWYVAMYREAKECIYVEPDREGDKKG 375 Query: 384 VFWYSNK 364 V+WY+NK Sbjct: 376 VYWYNNK 382 Score = 24.6 bits (52), Expect(2) = 4e-26 Identities = 9/9 (100%), Positives = 9/9 (100%) Frame = -1 Query: 583 VFHNITDTH 557 VFHNITDTH Sbjct: 307 VFHNITDTH 315
>FAD12_CREAL (O81931) Delta(12) fatty acid dehydrogenase (EC 1.14.99.33)| (Crepenynate synthase) (Delta-12 fatty acid acetylenase) Length = 375 Score = 92.0 bits (227), Expect = 1e-18 Identities = 42/68 (61%), Positives = 51/68 (75%), Gaps = 3/68 (4%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVEPE---DRKG 385 V HHLFS +PHYHA EA AI +LG++Y+ D TP+ KA WREAKECI++EPE KG Sbjct: 309 VMHHLFSYIPHYHAKEARDAINTVLGDFYKIDRTPILKAMWREAKECIFIEPEKGRGSKG 368 Query: 384 VFWYSNKF 361 V+WY NKF Sbjct: 369 VYWY-NKF 375
>FAD12_MORIS (P59668) Delta-12 fatty acid desaturase (EC 1.14.19.-)| Length = 400 Score = 70.1 bits (170), Expect = 4e-12 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVE 403 VAHHLFS MP YHA EAT +K +LGEYY +D +P+ A WR +EC +VE Sbjct: 340 VAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE 390
>FAD12_MORAP (Q9Y8H5) Delta-12 fatty acid desaturase (EC 1.14.19.-)| Length = 400 Score = 70.1 bits (170), Expect = 4e-12 Identities = 30/51 (58%), Positives = 37/51 (72%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQFDGTPVAKATWREAKECIYVE 403 VAHHLFS MP YHA EAT +K +LGEYY +D +P+ A WR +EC +VE Sbjct: 340 VAHHLFSQMPFYHAEEATYHLKKLLGEYYVYDPSPIVVAVWRSFRECRFVE 390
>FAD3E_TOBAC (P48626) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 379 Score = 50.8 bits (120), Expect = 3e-06 Identities = 20/30 (66%), Positives = 24/30 (80%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH EATKA KP+LG+YY+ Sbjct: 301 VIHHLFPQIPHYHLREATKAAKPVLGKYYR 330
>FAD3E_SOYBN (P48625) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 380 Score = 50.4 bits (119), Expect = 4e-06 Identities = 19/30 (63%), Positives = 25/30 (83%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 304 VIHHLFPQIPHYHLVEATQAAKPVLGDYYR 333
>FAD3C_BRANA (P48618) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) (Fragment) Length = 404 Score = 50.1 bits (118), Expect = 5e-06 Identities = 19/30 (63%), Positives = 25/30 (83%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 325 VIHHLFPQIPHYHLVEATEAAKPVLGKYYR 354
>FAD3C_SESIN (P48620) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 447 Score = 50.1 bits (118), Expect = 5e-06 Identities = 19/30 (63%), Positives = 25/30 (83%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 371 VIHHLFPQIPHYHLIEATEAAKPVLGKYYR 400
>FAD3C_ARATH (P46310) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 446 Score = 50.1 bits (118), Expect = 5e-06 Identities = 19/30 (63%), Positives = 25/30 (83%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 367 VIHHLFPQIPHYHLVEATEAAKPVLGKYYR 396
>FAD3D_ARATH (P48622) Temperature-sensitive omega-3 fatty acid desaturase,| chloroplast precursor (EC 1.14.19.-) Length = 435 Score = 50.1 bits (118), Expect = 5e-06 Identities = 19/30 (63%), Positives = 25/30 (83%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP+LG+YY+ Sbjct: 360 VIHHLFPQIPHYHLVEATEAAKPVLGKYYR 389
>FAD3C_RICCO (P48619) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 460 Score = 49.3 bits (116), Expect = 8e-06 Identities = 18/30 (60%), Positives = 25/30 (83%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP++G+YY+ Sbjct: 381 VIHHLFPQIPHYHLVEATEAAKPVMGKYYR 410
>FAD3C_SOYBN (P48621) Omega-3 fatty acid desaturase, chloroplast precursor (EC| 1.14.19.-) Length = 453 Score = 48.5 bits (114), Expect = 1e-05 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EAT+A KP+ G+YY+ Sbjct: 375 VIHHLFPQIPHYHLVEATEAAKPVFGKYYR 404
>FAD3E_PHAAU (P32291) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) (Indole-3-acetic acid-induced protein ARG1) Length = 380 Score = 47.4 bits (111), Expect = 3e-05 Identities = 18/30 (60%), Positives = 24/30 (80%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH +EATK+ K +LG+YY+ Sbjct: 301 VIHHLFPQIPHYHLVEATKSAKSVLGKYYR 330
>FAD3E_ARATH (P48623) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 386 Score = 46.6 bits (109), Expect = 5e-05 Identities = 18/30 (60%), Positives = 23/30 (76%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH ++ATKA K +LG YY+ Sbjct: 305 VIHHLFPQIPHYHLVDATKAAKHVLGRYYR 334
>FAD3E_BRANA (P48624) Omega-3 fatty acid desaturase, endoplasmic reticulum (EC| 1.14.19.-) Length = 383 Score = 45.4 bits (106), Expect = 1e-04 Identities = 17/30 (56%), Positives = 23/30 (76%) Frame = -2 Query: 555 VAHHLFSNMPHYHAMEATKAIKPILGEYYQ 466 V HHLF +PHYH ++AT+A K +LG YY+ Sbjct: 302 VIHHLFPQIPHYHLVDATRAAKHVLGRYYR 331
>Y115_ADE02 (P03290) Hypothetical protein E-115| Length = 115 Score = 32.3 bits (72), Expect = 1.0 Identities = 20/46 (43%), Positives = 23/46 (50%), Gaps = 7/46 (15%) Frame = +3 Query: 414 CTPWPRAMWPWRPGCRQTGSTRRGWA*SPW----WPPWR---GSAA 530 CT PRA P R C + RRGW +PW WP R GSA+ Sbjct: 49 CTA-PRAAPPPRASCAPRATPRRGWTMTPWSNATWPTRRAKTGSAS 93
>MAF_AVIS4 (P23091) Transforming protein Maf| Length = 369 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/46 (36%), Positives = 17/46 (36%) Frame = -1 Query: 556 GGAPPXLQHAALPRHGGHQGDQAHPRRVLPV*RHPGRQGHMARGQG 419 GGAP H P HGG G HP P P A G G Sbjct: 169 GGAPHYHHHHHHPHHGGGGGGGGHPHGAAPGSAPPSSASSSAAGSG 214
>EXP24_ARATH (Q9FL76) Alpha-expansin 24 precursor (AtEXPA24) (At-EXP24) (AtEx24)| (Ath-ExpAlpha-1.19) Length = 312 Score = 31.6 bits (70), Expect = 1.7 Identities = 20/54 (37%), Positives = 21/54 (38%), Gaps = 1/54 (1%) Frame = -1 Query: 577 HNITDTHGGAPPXLQHAALPRHGGHQGDQAHPRR-VLPV*RHPGRQGHMARGQG 419 H HG P H A P HG H AHP LP H G+ H G G Sbjct: 45 HGAHPAHGAHP---SHGAHPSHGAHPSHGAHPSHGALP--SHGGQVPHSGWGHG 93
>Y307_RHOPA (P61415) UPF0314 protein RPA0307| Length = 203 Score = 30.4 bits (67), Expect = 3.9 Identities = 15/47 (31%), Positives = 27/47 (57%) Frame = +2 Query: 425 ASRHVALATGVPSNW*YSPRMGLIALVASMAW*CGMLEXRWCATVRV 565 A R V+ A G+P W + +GL+A+ A++ + G + C TV++ Sbjct: 6 AERPVSSAAGLPVRWALAVVLGLLAIQATVLFAMGRVPICTCGTVKL 52
>ZDHC1_HUMAN (Q8WTX9) Probable palmitoyltransferase ZDHHC1 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 1) (DHHC-1) (Zinc finger protein 377) (DHHC-domain-containing cysteine-rich protein 1) Length = 485 Score = 29.6 bits (65), Expect = 6.6 Identities = 17/42 (40%), Positives = 21/42 (50%) Frame = +3 Query: 405 QRRCTPWPRAMWPWRPGCRQTGSTRRGWA*SPWWPPWRGSAA 530 +RR +PW R W RR WA +P WPP RG+ A Sbjct: 442 RRRQSPWTRFQW-----------RRRAWA-APLWPP-RGAGA 470
>RM09_YEAST (P31334) 60S ribosomal protein L9, mitochondrial precursor (YmL9)| Length = 269 Score = 29.6 bits (65), Expect = 6.6 Identities = 13/27 (48%), Positives = 15/27 (55%) Frame = -1 Query: 517 RHGGHQGDQAHPRRVLPV*RHPGRQGH 437 RHGG G P RVLP + PG G+ Sbjct: 200 RHGGSYGQNQDPGRVLPGRKMPGHMGN 226
>HEMK_HUMAN (Q9Y5R4) HemK methyltransferase family member 1 (EC 2.1.1.-)| (M.HsaHemKP) Length = 338 Score = 29.6 bits (65), Expect = 6.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +3 Query: 423 WPRAMWPWRPGCRQTGSTRRGWA*SPWWP 509 W R +W G + GSTR GWA S W P Sbjct: 4 WGRMLWALLSGPGRRGSTR-GWAFSSWQP 31
>TTC7B_HUMAN (Q86TV6) Tetratricopeptide repeat protein 7B (Tetratricopeptide| repeat protein 7-like-1) Length = 741 Score = 29.3 bits (64), Expect = 8.6 Identities = 18/56 (32%), Positives = 27/56 (48%) Frame = +2 Query: 266 KLTICR*MDGLLVRTSSLSSSWNTADDDPCG*NLLLYQKTPLRSSGST*MHSLASR 433 ++TI R + +L+R S WN +D PC L PLR +T ++L R Sbjct: 156 RMTIARQLAEILLRGMCEQSYWNPLEDPPCQSPL----DDPLRKGANTKTYTLTRR 207 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 73,611,737 Number of Sequences: 219361 Number of extensions: 1354069 Number of successful extensions: 3270 Number of sequences better than 10.0: 26 Number of HSP's better than 10.0 without gapping: 3154 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3261 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4986986160 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
