ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62i10 |
|---|---|
| Clone Library Name | barley_pub |
>CY11_SOLTU (P25076) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC13III) Length = 320 Score = 195 bits (495), Expect = 9e-50 Identities = 94/112 (83%), Positives = 96/112 (85%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 LLT Y DPP GV IREGLHYNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVVSF Sbjct: 209 LLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGIPATEAQMGKDVVSF 268 Query: 392 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLDVVN 237 LSWAAEPEMEERKLMG KWIF AYYRR+RWSVLKSRKLVLDVVN Sbjct: 269 LSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 320
>CY12_SOLTU (P29610) Cytochrome c1, heme protein, mitochondrial precursor| (Clone PC18I) (Fragment) Length = 260 Score = 194 bits (493), Expect = 1e-49 Identities = 93/112 (83%), Positives = 96/112 (85%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 LLT Y DPP GV IREGLHYNPYFPGGAIAMPKML DGA+EYEDG PATEAQMGKDVVSF Sbjct: 149 LLTAYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGVPATEAQMGKDVVSF 208 Query: 392 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLDVVN 237 L+WAAEPEMEERKLMG KWIF AYYRR+RWSVLKSRKLVLDVVN Sbjct: 209 LTWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLRWSVLKSRKLVLDVVN 260
>CY1_NEUCR (P07142) Cytochrome c1, heme protein, mitochondrial precursor| Length = 332 Score = 129 bits (323), Expect = 8e-30 Identities = 60/110 (54%), Positives = 78/110 (70%), Gaps = 1/110 (0%) Frame = -3 Query: 572 LLTGYHD-PPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVS 396 LLTGY D PP G + GL++NPYFPG IAM ++L DG ++YEDGTPA+ +QM KDVV Sbjct: 203 LLTGYPDEPPAGASVGAGLNFNPYFPGTGIAMARVLYDGLVDYEDGTPASTSQMAKDVVE 262 Query: 395 FLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLD 246 FL+WAAEPEM++RK MG+K + Y +R +W+ LKSRK+V D Sbjct: 263 FLNWAAEPEMDDRKRMGMKVLVVTSVLFALSVYVKRYKWAWLKSRKIVYD 312
>CY1_YEAST (P07143) Cytochrome c1, heme protein, mitochondrial precursor| Length = 309 Score = 121 bits (303), Expect = 2e-27 Identities = 55/110 (50%), Positives = 76/110 (69%), Gaps = 1/110 (0%) Frame = -3 Query: 572 LLTGYHD-PPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVS 396 LLTGY D PP GV + G +YNPYFPGG+IAM ++L D +EYEDGTPAT +QM KDV + Sbjct: 194 LLTGYPDEPPAGVALPPGSNYNPYFPGGSIAMARVLFDDMVEYEDGTPATTSQMAKDVTT 253 Query: 395 FLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLD 246 FL+W AEPE +ERK +G+K + + ++ +W+ +K+RK V + Sbjct: 254 FLNWCAEPEHDERKRLGLKTVIILSSLYLLSIWVKKFKWAGIKTRKFVFN 303
>CY1_KLULA (Q00988) Cytochrome c1, heme protein, mitochondrial precursor| Length = 292 Score = 119 bits (298), Expect = 6e-27 Identities = 54/110 (49%), Positives = 76/110 (69%), Gaps = 1/110 (0%) Frame = -3 Query: 572 LLTGY-HDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVS 396 LLTGY +PP GV + G +YNPYFPGG+IAM ++L D +EYEDGTPAT +QM KDV + Sbjct: 179 LLTGYPEEPPAGVVLPPGANYNPYFPGGSIAMGRVLFDDLVEYEDGTPATTSQMAKDVTT 238 Query: 395 FLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLD 246 FL W +EPE +ERK +G+K + + ++ +W+ +KSRK+V + Sbjct: 239 FLHWCSEPEHDERKRLGLKAMIVLSSLYLLSVWVKKFKWASIKSRKIVFN 288
>CY1_MOUSE (Q9D0M3) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 119 bits (298), Expect = 6e-27 Identities = 56/106 (52%), Positives = 72/106 (67%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 LLTGY +PP GV +REGL++NPYFPG AI M + +EY+DGTPAT +Q+ KDV +F Sbjct: 214 LLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYTEVLEYDDGTPATMSQVAKDVATF 273 Query: 392 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 255 L WA+EPE + RK MG+K + +R +WSVLKSRKL Sbjct: 274 LRWASEPEHDHRKRMGLKMLLMMGLLLPLTYAMKRHKWSVLKSRKL 319
>CY1_HUMAN (P08574) Cytochrome c1, heme protein, mitochondrial precursor| (Cytochrome c-1) Length = 325 Score = 119 bits (298), Expect = 6e-27 Identities = 56/106 (52%), Positives = 73/106 (68%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 LLTGY +PP GV +REGL++NPYFPG AIAM + +E++DGTPAT +Q+ KDV +F Sbjct: 214 LLTGYCEPPTGVSLREGLYFNPYFPGQAIAMAPPIYTDVLEFDDGTPATMSQIAKDVCTF 273 Query: 392 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 255 L WA+EPE + RK MG+K + +R +WSVLKSRKL Sbjct: 274 LRWASEPEHDHRKRMGLKMLMMMALLVPLVYTIKRHKWSVLKSRKL 319
>CY1_BOVIN (P00125) Cytochrome c1, heme protein, mitochondrial (Cytochrome| c-1) Length = 241 Score = 119 bits (297), Expect = 8e-27 Identities = 56/106 (52%), Positives = 73/106 (68%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 LLTGY +PP GV +REGL++NPYFPG AI M + + +E++DGTPAT +Q+ KDV +F Sbjct: 130 LLTGYCEPPTGVSLREGLYFNPYFPGQAIGMAPPIYNEVLEFDDGTPATMSQVAKDVCTF 189 Query: 392 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKL 255 L WAAEPE + RK MG+K + +R +WSVLKSRKL Sbjct: 190 LRWAAEPEHDHRKRMGLKMLLMMGLLLPLVYAMKRHKWSVLKSRKL 235
>CY1_EUGGR (P20114) Cytochrome c1, heme protein| Length = 243 Score = 100 bits (249), Expect = 3e-21 Identities = 54/113 (47%), Positives = 62/113 (54%), Gaps = 1/113 (0%) Frame = -3 Query: 572 LLTGYHDP-PXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVS 396 LLTGY P P GVQ+ YNPYF GG I MP L D IEYEDGTPA+ QM KDV Sbjct: 128 LLTGYGRPVPGGVQLSTTQWYNPYFHGGIIGMPPPLTDDMIEYEDGTPASVPQMAKDVTC 187 Query: 395 FLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLKSRKLVLDVVN 237 FL W + P +ERKL+G K I YY R + +SR+L N Sbjct: 188 FLEWCSNPWWDERKLLGYKTIATLAVIAVSSGYYNRFLSGLWRSRRLAFRPFN 240
>CYBC_BRAJA (P51131) Cytochrome b/c1 [Contains: Cytochrome b; Cytochrome c1]| Length = 687 Score = 91.3 bits (225), Expect = 2e-18 Identities = 44/77 (57%), Positives = 53/77 (68%), Gaps = 1/77 (1%) Frame = -3 Query: 572 LLTGYHDP-PXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVS 396 +L G+ + P GV I EG +YN YFPG AI MPK L DG + Y+DG+PAT AQ KDV + Sbjct: 585 VLQGFEEKVPEGVTIPEGSYYNKYFPGHAIKMPKPLSDGQVTYDDGSPATVAQYSKDVTT 644 Query: 395 FLSWAAEPEMEERKLMG 345 FL W AEP ME RK +G Sbjct: 645 FLMWTAEPHMEARKRLG 661
>CY1_RHOVI (P81379) Cytochrome c1 precursor| Length = 282 Score = 84.7 bits (208), Expect = 2e-16 Identities = 38/76 (50%), Positives = 48/76 (63%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 LL GY DPP ++ +G YN YFPG I M + DG + Y DGTP T+ Q KDV +F Sbjct: 177 LLNGYEDPPERFKVPDGSFYNKYFPGHIIGMTPPIADGLVTYGDGTPETQLQYSKDVAAF 236 Query: 392 LSWAAEPEMEERKLMG 345 L WAAEP ++ RK +G Sbjct: 237 LMWAAEPTLDVRKRIG 252
>CY1_RHORU (P23135) Cytochrome c1 precursor| Length = 272 Score = 83.6 bits (205), Expect = 4e-16 Identities = 38/67 (56%), Positives = 50/67 (74%) Frame = -3 Query: 539 VQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEE 360 V E ++N YFPG AI+MP LMD I YEDGT AT+ QM +DVV++L+WAAEPE++ Sbjct: 181 VAFNEAKYFNDYFPGHAISMPPPLMDDLITYEDGTAATKDQMAQDVVAYLNWAAEPELDA 240 Query: 359 RKLMGVK 339 RK +G+K Sbjct: 241 RKSLGLK 247
>CY1_PARDE (P13627) Cytochrome c1 precursor| Length = 450 Score = 64.3 bits (155), Expect = 2e-10 Identities = 37/102 (36%), Positives = 49/102 (48%) Frame = -3 Query: 572 LLTGYHDPPXGVQIREGLHYNPYFPGGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSF 393 +LTGY D + L++N F G I M L D + YEDGTPAT QM DV +F Sbjct: 344 VLTGY-DGEEKEEAGAVLYHNAAFAGNWIQMAAPLSDDQVTYEDGTPATVDQMATDVAAF 402 Query: 392 LSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWSVLK 267 L W AEP+M +RK +G + + W +K Sbjct: 403 LMWTAEPKMMDRKQVGFVSVIFLIVLAALLYLTNKKLWQPIK 444
>CY1_RHOCA (P08501) Cytochrome c1 precursor| Length = 279 Score = 59.7 bits (143), Expect = 6e-09 Identities = 31/80 (38%), Positives = 41/80 (51%) Frame = -3 Query: 497 GGAIAMPKMLMDGAIEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXX 318 G MP L+D + YEDGTPAT QM +DV +FL WAAEP++ RK MG+ + Sbjct: 199 GSWARMPPPLVDDQVTYEDGTPATVDQMAQDVSAFLMWAAEPKLVARKQMGLVAMVMLGL 258 Query: 317 XXXXXAYYRRMRWSVLKSRK 258 + W+ K K Sbjct: 259 LSVMLYLTNKRLWAPYKGHK 278
>CY1_RHOSH (Q02760) Cytochrome c1 precursor| Length = 285 Score = 57.8 bits (138), Expect = 2e-08 Identities = 39/126 (30%), Positives = 56/126 (44%), Gaps = 21/126 (16%) Frame = -3 Query: 572 LLTGY-HDPPXGVQIRE--GLHYNPYFPGGA------------------IAMPKMLMDGA 456 +LTG+ +PP + E G +YN F G+ IAMP LMD Sbjct: 156 VLTGFPEEPPKCAEGHEPDGFYYNRAFQNGSVPDTCKDANGVKTTAGSWIAMPPPLMDDL 215 Query: 455 IEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGVKWIFXXXXXXXXXAYYRRMRWS 276 +EY DG A+ M +DV +FL WAAEP++ RK G + + W+ Sbjct: 216 VEYADGHDASVHAMAEDVSAFLMWAAEPKLMARKQAGFTAVMFLTVLSVLLYLTNKRLWA 275 Query: 275 VLKSRK 258 +K +K Sbjct: 276 GVKGKK 281
>RSH1_MAIZE (Q41853) Homeobox protein rough sheath 1| Length = 351 Score = 29.3 bits (64), Expect = 8.3 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 17/90 (18%) Frame = +3 Query: 30 RYQLAKKYSKITAPLREMLLQQRKKTKEIVPK------V*W-----------ETTRVAKY 158 +YQL KKYS + LR+ +++KK K +PK + W ET ++A Sbjct: 234 KYQLLKKYSGYLSSLRQEFSKKKKKGK--LPKEARQKLLHWWELHYKWPYPSETEKIA-- 289 Query: 159 TTESPYFDRFCLKTRCCNRKKKQWSLVDDV 248 ES D+ + N++K+ W +D+ Sbjct: 290 LAESTGLDQKQINNWFINQRKRHWKPSEDM 319 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 84,240,188 Number of Sequences: 219361 Number of extensions: 1742058 Number of successful extensions: 4209 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 4088 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4207 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
