ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62i07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
2dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.92
3ref|XM_740908.1| Plasmodium chabaudi chabaudi PfSNF2L (PC000596.... 40 3.6
4ref|XM_731253.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 3.6
5ref|XM_666411.1| Plasmodium berghei strain ANKA hypothetical pro... 40 3.6

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 111      accaacaaatatatatatcca 131
                |||||||||||||||||||||
Sbjct: 19646263 accaacaaatatatatatcca 19646243



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>dbj|AP005176.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0041J06
          Length = 138157

 Score = 42.1 bits (21), Expect = 0.92
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 111   accaacaaatatatatatcca 131
             |||||||||||||||||||||
Sbjct: 84913 accaacaaatatatatatcca 84893



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>ref|XM_740908.1| Plasmodium chabaudi chabaudi PfSNF2L (PC000596.01.0) partial mRNA
          Length = 2640

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 taccaacaaatatatatatc 129
           ||||||||||||||||||||
Sbjct: 79  taccaacaaatatatatatc 60



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>ref|XM_731253.1| Plasmodium chabaudi chabaudi hypothetical protein (PC301253.00.0)
           partial mRNA
          Length = 843

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 taccaacaaatatatatatc 129
           ||||||||||||||||||||
Sbjct: 685 taccaacaaatatatatatc 666



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>ref|XM_666411.1| Plasmodium berghei strain ANKA hypothetical protein (PB000382.01.0)
           partial mRNA
          Length = 972

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 110 taccaacaaatatatatatc 129
           ||||||||||||||||||||
Sbjct: 580 taccaacaaatatatatatc 561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,276,591
Number of Sequences: 3902068
Number of extensions: 2276591
Number of successful extensions: 40924
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40898
Number of HSP's gapped (non-prelim): 26
length of query: 279
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 257
effective length of database: 17,147,199,772
effective search space: 4406830341404
effective search space used: 4406830341404
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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