ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62i03 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_476776.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2619 Score = 172 bits (87), Expect = 6e-40 Identities = 228/275 (82%) Strand = Plus / Minus Query: 134 aaaatatgaaacccattcgagtctctgactgaaatctcttttccggtagcagcagaggcg 193 ||||||||||||||| |||||| ||||| | |||||||| |||||||| ||||| | Sbjct: 2588 aaaatatgaaacccagccgagtccctgaccaagatctctttaccggtagctgcagaagta 2529 Query: 194 tgctccagaaatgagtggcagtcaccacacatgcggatgttcttcacgacacggataatt 253 | |||||| ||||||||||| |||||||||||||||| |||||||||||| ||||| || Sbjct: 2528 tactccaggaatgagtggcaatcaccacacatgcggacgttcttcacgacgcggatggtt 2469 Query: 254 ttcccagagcctgccattaggaggccatatgtagctgctagttttgcactgtggtacatt 313 | ||| |||| |||||| |||||||| | || ||||| || | || |||||||| Sbjct: 2468 tcaccatgtcctgacattagaaggccatacatggcagctagcttcacgctatggtacatc 2409 Query: 314 aggaaatacctcttttgatattcctcgacatcatgtaggacaaaggtggtgtctggttca 373 ||||| | |||||| || ||||||||||| || ||||| || ||||||||||| |||||| Sbjct: 2408 aggaagtgcctcttctggtattcctcgacgtcgtgtagcacgaaggtggtgtccggttca 2349 Query: 374 tacccggccttcatgcactcaagagttagcacgtc 408 ||||| ||||||||||||||||| |||||||||| Sbjct: 2348 tacccagccttcatgcactcaaggattagcacgtc 2314
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 172 bits (87), Expect = 6e-40 Identities = 228/275 (82%) Strand = Plus / Plus Query: 134 aaaatatgaaacccattcgagtctctgactgaaatctcttttccggtagcagcagaggcg 193 ||||||||||||||| |||||| ||||| | |||||||| |||||||| ||||| | Sbjct: 3850283 aaaatatgaaacccagccgagtccctgaccaagatctctttaccggtagctgcagaagta 3850342 Query: 194 tgctccagaaatgagtggcagtcaccacacatgcggatgttcttcacgacacggataatt 253 | |||||| ||||||||||| |||||||||||||||| |||||||||||| ||||| || Sbjct: 3850343 tactccaggaatgagtggcaatcaccacacatgcggacgttcttcacgacgcggatggtt 3850402 Query: 254 ttcccagagcctgccattaggaggccatatgtagctgctagttttgcactgtggtacatt 313 | ||| |||| |||||| |||||||| | || ||||| || | || |||||||| Sbjct: 3850403 tcaccatgtcctgacattagaaggccatacatggcagctagcttcacgctatggtacatc 3850462 Query: 314 aggaaatacctcttttgatattcctcgacatcatgtaggacaaaggtggtgtctggttca 373 ||||| | |||||| || ||||||||||| || ||||| || ||||||||||| |||||| Sbjct: 3850463 aggaagtgcctcttctggtattcctcgacgtcgtgtagcacgaaggtggtgtccggttca 3850522 Query: 374 tacccggccttcatgcactcaagagttagcacgtc 408 ||||| ||||||||||||||||| |||||||||| Sbjct: 3850523 tacccagccttcatgcactcaaggattagcacgtc 3850557
>dbj|AP004670.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0496D04 Length = 197358 Score = 172 bits (87), Expect = 6e-40 Identities = 228/275 (82%) Strand = Plus / Plus Query: 134 aaaatatgaaacccattcgagtctctgactgaaatctcttttccggtagcagcagaggcg 193 ||||||||||||||| |||||| ||||| | |||||||| |||||||| ||||| | Sbjct: 89395 aaaatatgaaacccagccgagtccctgaccaagatctctttaccggtagctgcagaagta 89454 Query: 194 tgctccagaaatgagtggcagtcaccacacatgcggatgttcttcacgacacggataatt 253 | |||||| ||||||||||| |||||||||||||||| |||||||||||| ||||| || Sbjct: 89455 tactccaggaatgagtggcaatcaccacacatgcggacgttcttcacgacgcggatggtt 89514 Query: 254 ttcccagagcctgccattaggaggccatatgtagctgctagttttgcactgtggtacatt 313 | ||| |||| |||||| |||||||| | || ||||| || | || |||||||| Sbjct: 89515 tcaccatgtcctgacattagaaggccatacatggcagctagcttcacgctatggtacatc 89574 Query: 314 aggaaatacctcttttgatattcctcgacatcatgtaggacaaaggtggtgtctggttca 373 ||||| | |||||| || ||||||||||| || ||||| || ||||||||||| |||||| Sbjct: 89575 aggaagtgcctcttctggtattcctcgacgtcgtgtagcacgaaggtggtgtccggttca 89634 Query: 374 tacccggccttcatgcactcaagagttagcacgtc 408 ||||| ||||||||||||||||| |||||||||| Sbjct: 89635 tacccagccttcatgcactcaaggattagcacgtc 89669
>gb|AC163719.4| Mus musculus BAC clone RP23-421M6 from chromosome 9, complete sequence Length = 177404 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 tctctgactgaaatctctttt 175 ||||||||||||||||||||| Sbjct: 150106 tctctgactgaaatctctttt 150126
>gb|AC157526.2| Pan troglodytes BAC clone CH251-513A15 from chromosome unknown, complete sequence Length = 188881 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 25 caaaacaaggatatcttctat 45 ||||||||||||||||||||| Sbjct: 118179 caaaacaaggatatcttctat 118199
>gb|AC084783.2|AC084783 Homo sapiens chromosome 15 clone RP11-5N19 map 15q21.3, complete sequence Length = 166982 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 25 caaaacaaggatatcttctat 45 ||||||||||||||||||||| Sbjct: 151773 caaaacaaggatatcttctat 151753
>gb|AC164589.6| Mus musculus chromosome 8, clone RP24-363C11, complete sequence Length = 197883 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ctgactgaaatctcttttcc 177 |||||||||||||||||||| Sbjct: 155060 ctgactgaaatctcttttcc 155041
>ref|XM_754311.1| Ustilago maydis 521 hypothetical protein (UM03257.1) partial mRNA Length = 3879 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 ctcttttccggtagcagcag 188 |||||||||||||||||||| Sbjct: 2816 ctcttttccggtagcagcag 2797
>emb|CR543861.1| Acinetobacter sp. ADP1 complete genome Length = 3598621 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 aaaggtggtgtctggttcat 374 |||||||||||||||||||| Sbjct: 603497 aaaggtggtgtctggttcat 603478
>emb|BX510987.7| Zebrafish DNA sequence from clone DKEY-43H1 in linkage group 20, complete sequence Length = 124927 Score = 40.1 bits (20), Expect = 5.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 65 agacactgcaaagaagtcaaaatt 88 ||||| |||||||||||||||||| Sbjct: 67825 agacattgcaaagaagtcaaaatt 67802
>gb|AC099723.16| Mus musculus chromosome 8, clone RP23-369P21, complete sequence Length = 184770 Score = 40.1 bits (20), Expect = 5.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ctgactgaaatctcttttcc 177 |||||||||||||||||||| Sbjct: 139523 ctgactgaaatctcttttcc 139504 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,810,170 Number of Sequences: 3902068 Number of extensions: 3810170 Number of successful extensions: 69539 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69492 Number of HSP's gapped (non-prelim): 47 length of query: 408 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 386 effective length of database: 17,147,199,772 effective search space: 6618819111992 effective search space used: 6618819111992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
