ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62h18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y5224_ARATH (Q94EG6) Protein At5g02240 33 0.52
2HISX_METJA (Q58851) Histidinol dehydrogenase (EC 1.1.1.23) (HDH) 30 3.3
3Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor 28 9.7
4K2C8_PROAT (Q5K2N3) Keratin, type II cytoskeletal 8 (Cytokeratin... 28 9.7

>Y5224_ARATH (Q94EG6) Protein At5g02240|
          Length = 253

 Score = 32.7 bits (73), Expect = 0.52
 Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 482 EEPGGQRAXIFDQGNRISQA----ISCADVADICVKALHDSTARNKSFDV 345
           ++ GG R  +  + + + Q     +  ADVA++C++AL    A+NK+FD+
Sbjct: 179 DKEGGVRELLVGKDDELLQTDTKTVPRADVAEVCIQALLFEEAKNKAFDL 228



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>HISX_METJA (Q58851) Histidinol dehydrogenase (EC 1.1.1.23) (HDH)|
          Length = 429

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 18/65 (27%), Positives = 33/65 (50%)
 Frame = -2

Query: 440 NRISQAISCADVADICVKALHDSTARNKSFDVCYEYVSEQGNELYELVAHLPDKANNYLT 261
           N+I + I  A+  +I +KAL +S       + C E+ ++   E  E++   P++  N + 
Sbjct: 285 NKIFEEIEKAERKEIILKALENSAILIGDLEECIEFSNKYAPEHLEILTKNPEEVLNKIK 344

Query: 260 PALSV 246
            A SV
Sbjct: 345 HAGSV 349



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>Y2766_ARATH (O80934) Protein At2g37660, chloroplast precursor|
          Length = 325

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = -2

Query: 482 EEPGGQRAXIFDQGNRI----SQAISCADVADICVKALHDSTARNKSFDV 345
           ++ GG R  +  + + +    ++ I+ ADVA++CV+AL    A+ K+ D+
Sbjct: 251 DKDGGIRELLVGKDDELLETETRTIARADVAEVCVQALQLEEAKFKALDL 300



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>K2C8_PROAT (Q5K2N3) Keratin, type II cytoskeletal 8 (Cytokeratin-8) (CK-8)|
           (Keratin-8) (K8)
          Length = 496

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 283 SGK*ATSSYSSFPCSETYS*HTSKLLFLAVES 378
           SG   TSSYSSFP   +YS     ++   +ES
Sbjct: 450 SGSFQTSSYSSFPLETSYSSPKKSIIVKTIES 481


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,199,525
Number of Sequences: 219361
Number of extensions: 1208967
Number of successful extensions: 2723
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2663
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2723
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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