Clone Information

BLAST Search Result

Clone Name	rbah62h18
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY224493.1\| Oryza sativa (japonica cultivar-group) isolate 30...	319	5e-84
2	dbj\|AK120907.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	319	5e-84
3	ref\|XM_464065.1\| Oryza sativa (japonica cultivar-group), mRNA	240	3e-60
4	gb\|AY110583.1\| Zea mays CL25181_-1 mRNA sequence	172	7e-40
5	ref\|NM_101533.3\| Arabidopsis thaliana oxidoreductase AT1G16720 m...	147	4e-32
6	gb\|AY128723.1\| Arabidopsis thaliana unknown protein (At1g16720) ...	147	4e-32
7	gb\|AY062632.1\| Arabidopsis thaliana Unknown protein (At1g16720; ...	147	4e-32
8	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
9	dbj\|AP003761.3\| Oryza sativa (japonica cultivar-group) genomic D...	101	2e-18
10	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
11	dbj\|AP005647.3\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
12	dbj\|AP005474.3\| Oryza sativa (japonica cultivar-group) genomic D...	96	1e-16
13	gb\|AC144538.23\| Medicago truncatula clone mth2-31l21, complete s...	58	3e-05
14	dbj\|AP007265.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	58	3e-05
15	gb\|AC011808.4\|AC011808 Arabidopsis thaliana chromosome I BAC F19...	56	1e-04
16	gb\|AC026237.4\|AC026237 Arabidopsis thaliana chromosome I BAC F17...	56	1e-04
17	emb\|AL160401.12\| Human DNA sequence from clone RP11-442J1 on chr...	48	0.027
18	gb\|AC153865.3\| Mus musculus BAC RP23-373P9 (Roswell Park Cancer...	44	0.42
19	gb\|AC132256.3\| Mus musculus BAC clone RP24-358I7 from chromosome...	44	0.42
20	gb\|M16110.1\|HUMAFP Homo sapiens alpha-fetoprotein gene, complete...	44	0.42
21	gb\|AC135794.3\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.7
22	ref\|XM_765697.1\| Giardia lamblia ATCC 50803 hypothetical protein...	42	1.7
23	emb\|BX936333.10\| Zebrafish DNA sequence from clone CH211-90O16 i...	42	1.7
24	gb\|AC112193.2\| Homo sapiens chromosome 5 clone RP11-373F8, compl...	42	1.7
25	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.7
26	gb\|AC093412.3\| Homo sapiens chromosome 3 clone RP11-11L6, comple...	42	1.7
27	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	42	1.7
28	dbj\|AP006081.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	42	1.7
29	gb\|AC163669.2\| Mus musculus BAC clone RP23-29H1 from chromosome ...	40	6.5
30	gb\|AC132134.2\| Mus musculus BAC clone RP23-267P6 from chromosome...	40	6.5
31	gb\|AC162307.5\| Mus musculus BAC clone RP23-271I2 from chromosome...	40	6.5
32	emb\|AL117341.26\|HSBA512N4 Human DNA sequence from clone RP11-512...	40	6.5
33	emb\|CR354591.13\| Zebrafish DNA sequence from clone DKEY-18L4 in ...	40	6.5
34	gb\|AC022523.7\| Homo sapiens chromosome 15, clone RP11-183E24, co...	40	6.5
35	gb\|AC158384.2\| Mus musculus BAC clone RP24-97I24 from chromosome...	40	6.5
36	gb\|AC092078.2\|AC092078 Homo sapiens chromosome 15 clone CTD-2007...	40	6.5
37	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
38	gb\|AC066611.6\|AC066611 Homo sapiens chromosome 15 clone RP11-348...	40	6.5
39	gb\|AC145938.4\| Pan troglodytes BAC clone RP43-18H20 from chromos...	40	6.5
40	gb\|AC025167.6\|AC025167 Homo sapiens chromosome 15 clone CTD-2556...	40	6.5
41	dbj\|AP003350.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
42	gb\|AC087732.11\| Homo sapiens chromosome 15, clone RP11-565O12, c...	40	6.5
43	dbj\|AP004119.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.5
44	emb\|AL929009.5\| Zebrafish DNA sequence from clone CH211-202A8 in...	40	6.5
45	gb\|AC107773.9\| Mus musculus chromosome 18, clone RP23-102H15, co...	40	6.5
46	gb\|AC145956.4\| Gallus gallus BAC clone CH261-14N1 from chromosom...	40	6.5
47	gb\|AC154178.1\| Mus musculus BAC clone RP23-465N18 from 17, compl...	40	6.5
48	emb\|AL935052.8\| Zebrafish DNA sequence from clone CH211-168J10 i...	40	6.5
49	gb\|AE017262.2\| Listeria monocytogenes str. 4b F2365, complete ge...	40	6.5

>gb|AY224493.1| Oryza sativa (japonica cultivar-group) isolate 30868 unknown mRNA
          Length = 1503

 Score =  319 bits (161), Expect = 5e-84
 Identities = 232/256 (90%)
 Strand = Plus / Minus

                                                                        
Query: 228  tcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 287
            ||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 1503 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 1444

                                                                        
Query: 288  caaatgagccacaagttcatacagttcattcccttgctcagaaacatactcatagcatac 347
             ||||| |||||||||||||| || ||||||||||||| ||  |||||||| ||||||||
Sbjct: 1443 taaatgggccacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 1384

                                                                        
Query: 348  atcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctac 407
            ||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct: 1383 atcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgctac 1324

                                                                        
Query: 408  atccgcacagctgatagcctgagagattctgtttccttgatcaaagatcantgcacgctg 467
            ||| || || |||||| |||| ||||||||||| |||||||||||||||| |||||||||
Sbjct: 1323 atcggcgcaactgataccctgcgagattctgttcccttgatcaaagatcaatgcacgctg 1264

                            
Query: 468  accgccaggttcttcc 483
            ||| ||||||||||||
Sbjct: 1263 accaccaggttcttcc 1248

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>dbj|AK120907.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023031L08, full
            insert sequence
          Length = 2197

 Score =  319 bits (161), Expect = 5e-84
 Identities = 232/256 (90%)
 Strand = Plus / Minus

                                                                        
Query: 228  tcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 287
            ||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 1997 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 1938

                                                                        
Query: 288  caaatgagccacaagttcatacagttcattcccttgctcagaaacatactcatagcatac 347
             ||||| |||||||||||||| || ||||||||||||| ||  |||||||| ||||||||
Sbjct: 1937 taaatgggccacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 1878

                                                                        
Query: 348  atcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctac 407
            ||||||||||||||| || || |||||||||||||||||||||||||| |||||||||||
Sbjct: 1877 atcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgctac 1818

                                                                        
Query: 408  atccgcacagctgatagcctgagagattctgtttccttgatcaaagatcantgcacgctg 467
            ||| || || |||||| |||| ||||||||||| |||||||||||||||| |||||||||
Sbjct: 1817 atcggcgcaactgataccctgcgagattctgttcccttgatcaaagatcaatgcacgctg 1758

                            
Query: 468  accgccaggttcttcc 483
            ||| ||||||||||||
Sbjct: 1757 accaccaggttcttcc 1742

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>ref|XM_464065.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1797

 Score =  240 bits (121), Expect = 3e-60
 Identities = 222/256 (86%)
 Strand = Plus / Minus

                                                                        
Query: 228  tcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 287
            ||||||||| ||||| ||||| || || || ||||  || || ||||| ||||| || ||
Sbjct: 1797 tcaggtgttcttctcaagaacagagagagctggtgccaggtaattgttcgccttgtcagg 1738

                                                                        
Query: 288  caaatgagccacaagttcatacagttcattcccttgctcagaaacatactcatagcatac 347
            |||||||||||||||||||||||  |||| ||||||||  || ||||  |||||||| ||
Sbjct: 1737 caaatgagccacaagttcatacaactcatccccttgctttgagacatgttcatagcacac 1678

                                                                        
Query: 348  atcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctac 407
            |||||| ||||||||||| || || ||||| |||||||| ||||||||||||||||||||
Sbjct: 1677 atcaaagcttttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgctac 1618

                                                                        
Query: 408  atccgcacagctgatagcctgagagattctgtttccttgatcaaagatcantgcacgctg 467
             || |||||||||||| |||||||||||||||| ||||||||||||||||  ||||||||
Sbjct: 1617 gtcggcacagctgataccctgagagattctgttcccttgatcaaagatcagagcacgctg 1558

                            
Query: 468  accgccaggttcttcc 483
            ||||||||||||||||
Sbjct: 1557 accgccaggttcttcc 1542

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>gb|AY110583.1| Zea mays CL25181_-1 mRNA sequence
          Length = 594

 Score =  172 bits (87), Expect = 7e-40
 Identities = 161/186 (86%)
 Strand = Plus / Plus

                                                                       
Query: 298 acaagttcatacagttcattcccttgctcagaaacatactcatagcatacatcaaaactt 357
           ||||||||||| || || |||||||| |||   || ||||| ||||||||||| ||||||
Sbjct: 237 acaagttcataaagctcgttcccttggtcactgacgtactcgtagcatacatcgaaactt 296

                                                                       
Query: 358 ttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatccgcacag 417
           ||||||||||| ||||||||||||| ||| |||||||||||||| || ||||| ||||||
Sbjct: 297 ttgtttctcgcagtggaatcatgcagtgccttgacacagatatcagccacatcagcacag 356

                                                                       
Query: 418 ctgatagcctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggt 477
           |||||| |||| ||||||||||| |||||||| |||||||  || ||||| || ||||||
Sbjct: 357 ctgataccctgggagattctgttcccttgatcgaagatcagcgcgcgctggccaccaggt 416

                 
Query: 478 tcttcc 483
           ||||||
Sbjct: 417 tcttcc 422



 Score = 42.1 bits (21), Expect = 1.7
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 226 aatcaggtgtttttctctagaaccgatagtgccggtg 262
           ||||||||||| ||||||||||| || ||||| ||||
Sbjct: 165 aatcaggtgttcttctctagaacagacagtgctggtg 201

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>ref|NM_101533.3| Arabidopsis thaliana oxidoreductase AT1G16720 mRNA, complete cds
          Length = 2100

 Score =  147 bits (74), Expect = 4e-32
 Identities = 170/202 (84%)
 Strand = Plus / Minus

                                                                        
Query: 256  gccggtgtaagatagttgttagccttatctggcaaatgagccacaagttcatacagttca 315
            ||||| || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| 
Sbjct: 1842 gccggagtcagatagttgttcgccttgtctggcaaatgagccaccagctcatagagttct 1783

                                                                        
Query: 316  ttcccttgctcagaaacatactcatagcatacatcaaaacttttgtttctcgccgtggaa 375
             | |||||||||| ||| || |||| ||| |||||||| ||||||||||| || || |||
Sbjct: 1782 attccttgctcagcaacgtattcatggcaaacatcaaagcttttgtttctggcggttgaa 1723

                                                                        
Query: 376  tcatgcaatgctttgacacagatatctgctacatccgcacagctgatagcctgagagatt 435
            || |||| ||| |||||||| ||||| || |||||||| || || ||  ||||||| |||
Sbjct: 1722 tcgtgcagtgccttgacacatatatcagccacatccgcgcaactaatgccctgagaaatt 1663

                                  
Query: 436  ctgtttccttgatcaaagatca 457
            ||||||||||||||||| ||||
Sbjct: 1662 ctgtttccttgatcaaatatca 1641

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>gb|AY128723.1| Arabidopsis thaliana unknown protein (At1g16720) mRNA, complete cds
          Length = 1863

 Score =  147 bits (74), Expect = 4e-32
 Identities = 170/202 (84%)
 Strand = Plus / Minus

                                                                        
Query: 256  gccggtgtaagatagttgttagccttatctggcaaatgagccacaagttcatacagttca 315
            ||||| || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| 
Sbjct: 1769 gccggagtcagatagttgttcgccttgtctggcaaatgagccaccagctcatagagttct 1710

                                                                        
Query: 316  ttcccttgctcagaaacatactcatagcatacatcaaaacttttgtttctcgccgtggaa 375
             | |||||||||| ||| || |||| ||| |||||||| ||||||||||| || || |||
Sbjct: 1709 attccttgctcagcaacgtattcatggcaaacatcaaagcttttgtttctggcggttgaa 1650

                                                                        
Query: 376  tcatgcaatgctttgacacagatatctgctacatccgcacagctgatagcctgagagatt 435
            || |||| ||| |||||||| ||||| || |||||||| || || ||  ||||||| |||
Sbjct: 1649 tcgtgcagtgccttgacacatatatcagccacatccgcgcaactaatgccctgagaaatt 1590

                                  
Query: 436  ctgtttccttgatcaaagatca 457
            ||||||||||||||||| ||||
Sbjct: 1589 ctgtttccttgatcaaatatca 1568

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>gb|AY062632.1| Arabidopsis thaliana Unknown protein (At1g16720; F17F16.7) mRNA,
            complete cds
          Length = 2040

 Score =  147 bits (74), Expect = 4e-32
 Identities = 170/202 (84%)
 Strand = Plus / Minus

                                                                        
Query: 256  gccggtgtaagatagttgttagccttatctggcaaatgagccacaagttcatacagttca 315
            ||||| || ||||||||||| ||||| ||||||||||||||||| || ||||| ||||| 
Sbjct: 1842 gccggagtcagatagttgttcgccttgtctggcaaatgagccaccagctcatagagttct 1783

                                                                        
Query: 316  ttcccttgctcagaaacatactcatagcatacatcaaaacttttgtttctcgccgtggaa 375
             | |||||||||| ||| || |||| ||| |||||||| ||||||||||| || || |||
Sbjct: 1782 attccttgctcagcaacgtattcatggcaaacatcaaagcttttgtttctggcggttgaa 1723

                                                                        
Query: 376  tcatgcaatgctttgacacagatatctgctacatccgcacagctgatagcctgagagatt 435
            || |||| ||| |||||||| ||||| || |||||||| || || ||  ||||||| |||
Sbjct: 1722 tcgtgcagtgccttgacacatatatcagccacatccgcgcaactaatgccctgagaaatt 1663

                                  
Query: 436  ctgtttccttgatcaaagatca 457
            ||||||||||||||||| ||||
Sbjct: 1662 ctgtttccttgatcaaatatca 1641

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                            
Query: 345      tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 404
                |||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||
Sbjct: 29247135 tacatcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgc 29247194

                                   
Query: 405      tacatccgcacagctgata 423
                |||||| || || ||||||
Sbjct: 29247195 tacatcggcgcaactgata 29247213



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                            
Query: 228      tcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 287
                ||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 29246828 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 29246887

                            
Query: 288      caaatgagccac 299
                 ||||| |||||
Sbjct: 29246888 taaatgggccac 29246899



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                           
Query: 425      cctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
                |||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 29247303 cctgcgagattctgttcccttgatcaaagatcaatgcacgctgaccaccaggttcttcc 29247361



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                                   
Query: 297      cacaagttcatacagttcattcccttgctcagaaacatactcatagcatac 347
                |||||||||||| || ||||||||||||| ||  |||||||| ||||||||
Sbjct: 29247008 cacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 29247058

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>dbj|AP003761.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0018H04
          Length = 142053

 Score =  101 bits (51), Expect = 2e-18
 Identities = 72/79 (91%)
 Strand = Plus / Plus

                                                                         
Query: 345   tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 404
             |||||||||||||||||| || || |||||||||||||||||||||||||| ||||||||
Sbjct: 9933  tacatcaaaacttttgttcctagcagtggaatcatgcaatgctttgacacaaatatctgc 9992

                                
Query: 405   tacatccgcacagctgata 423
             |||||| || || ||||||
Sbjct: 9993  tacatcggcgcaactgata 10011



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 66/72 (91%)
 Strand = Plus / Plus

                                                                        
Query: 228  tcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatctgg 287
            ||||||||| ||||||||||| |||| |||||||||||||||||||||||| ||||||||
Sbjct: 9626 tcaggtgttcttctctagaacagataatgccggtgtaagatagttgttagctttatctgg 9685

                        
Query: 288  caaatgagccac 299
             ||||| |||||
Sbjct: 9686 taaatgggccac 9697



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 55/59 (93%)
 Strand = Plus / Plus

                                                                        
Query: 425   cctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
             |||| ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 10101 cctgcgagattctgttcccttgatcaaagatcaatgcacgctgaccaccaggttcttcc 10159



 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 45/51 (88%)
 Strand = Plus / Plus

                                                               
Query: 297  cacaagttcatacagttcattcccttgctcagaaacatactcatagcatac 347
            |||||||||||| || ||||||||||||| ||  |||||||| ||||||||
Sbjct: 9806 cacaagttcatatagctcattcccttgcttagctacatactcgtagcatac 9856

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                           
Query: 345     tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 404
               ||||||||| ||||||||||| || || ||||| |||||||| |||||||||||||||||
Sbjct: 2005076 tacatcaaagcttttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgc 2005017

                                       
Query: 405     tacatccgcacagctgatagcctg 428
               ||| || |||||||||||| ||||
Sbjct: 2005016 tacgtcggcacagctgataccctg 2004993



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                          
Query: 425     cctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
               |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 2004893 cctgagagattctgttcccttgatcaaagatcagagcacgctgaccgccaggttcttcc 2004835



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                           
Query: 226     aatcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatct 285
               ||||||||||| ||||| ||||| || || || ||||  || || ||||| ||||| || 
Sbjct: 2005403 aatcaggtgttcttctcaagaacagagagagctggtgccaggtaattgttcgccttgtca 2005344

                             
Query: 286     ggcaaatgagccac 299
               ||||||||||||||
Sbjct: 2005343 ggcaaatgagccac 2005330



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 414      acagctgatagcctgagaga 433
                ||||||||||||||||||||
Sbjct: 31669186 acagctgatagcctgagaga 31669167

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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 75/84 (89%)
 Strand = Plus / Minus

                                                                         
Query: 345   tacatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgc 404
             ||||||||| ||||||||||| || || ||||| |||||||| |||||||||||||||||
Sbjct: 55284 tacatcaaagcttttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgc 55225

                                     
Query: 405   tacatccgcacagctgatagcctg 428
             ||| || |||||||||||| ||||
Sbjct: 55224 tacgtcggcacagctgataccctg 55201



 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                        
Query: 425   cctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
             |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 55101 cctgagagattctgttcccttgatcaaagatcagagcacgctgaccgccaggttcttcc 55043



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                         
Query: 226   aatcaggtgtttttctctagaaccgatagtgccggtgtaagatagttgttagccttatct 285
             ||||||||||| ||||| ||||| || || || ||||  || || ||||| ||||| || 
Sbjct: 55611 aatcaggtgttcttctcaagaacagagagagctggtgccaggtaattgttcgccttgtca 55552

                           
Query: 286   ggcaaatgagccac 299
             ||||||||||||||
Sbjct: 55551 ggcaaatgagccac 55538

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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score = 95.6 bits (48), Expect = 1e-16
 Identities = 56/59 (94%)
 Strand = Plus / Minus

                                                                         
Query: 425    cctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
              |||||||||||||||| ||||||||||||||||  ||||||||||||||||||||||||
Sbjct: 144454 cctgagagattctgttcccttgatcaaagatcagagcacgctgaccgccaggttcttcc 144396



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 63/71 (88%)
 Strand = Plus / Minus

                                                                          
Query: 358    ttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgctacatccgcacag 417
              |||||||| || || ||||| |||||||| |||||||||||||||||||| || ||||||
Sbjct: 144624 ttgtttcttgctgttgaatcgtgcaatgccttgacacagatatctgctacgtcggcacag 144565

                         
Query: 418    ctgatagcctg 428
              |||||| ||||
Sbjct: 144564 ctgataccctg 144554

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>gb|AC144538.23| Medicago truncatula clone mth2-31l21, complete sequence
          Length = 135050

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Minus

                                                                         
Query: 346   acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 405
             |||||||| ||||||||||| || || |||||||| | ||| || ||||| ||||| |||
Sbjct: 45568 acatcaaagcttttgtttcttgcagttgaatcatggagtgccttcacacatatatcggct 45509

                              
Query: 406   acatccgcacagctgat 422
             ||||| ||||| |||||
Sbjct: 45508 acatcagcacaactgat 45492



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 48/56 (85%)
 Strand = Plus / Minus

                                                                     
Query: 428   gagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
             |||| ||||||| |||||||||||| || |  |||||||| || ||||||||||||
Sbjct: 45292 gagatattctgtctccttgatcaaatattagagcacgctgcccaccaggttcttcc 45237

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>dbj|AP007265.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT11L01, TM1658,
             complete sequence
          Length = 99089

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 65/77 (84%)
 Strand = Plus / Plus

                                                                         
Query: 346   acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 405
             |||||||| ||||||||||| || || |||||||| | ||| || ||||| ||||| || 
Sbjct: 26276 acatcaaagcttttgtttcttgcagttgaatcatgtagtgccttcacacatatatcagcc 26335

                              
Query: 406   acatccgcacagctgat 422
             ||||| |||||||||||
Sbjct: 26336 acatcagcacagctgat 26352



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 49/59 (83%)
 Strand = Plus / Plus

                                                                        
Query: 425   cctgagagattctgtttccttgatcaaagatcantgcacgctgaccgccaggttcttcc 483
             ||||||| ||||  |||||||||||||| || |  || ||||| || ||||||||||||
Sbjct: 26504 cctgagatattcgatttccttgatcaaatattagagcgcgctgcccaccaggttcttcc 26562

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>gb|AC011808.4|AC011808 Arabidopsis thaliana chromosome I BAC F19K19 genomic sequence, complete
             sequence
          Length = 93485

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 346   acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 405
             |||||||| ||||||||||| || || ||||| |||| ||| |||||||| ||||| || 
Sbjct: 12755 acatcaaagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagcc 12814

                     
Query: 406   acatccgc 413
             ||||||||
Sbjct: 12815 acatccgc 12822



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 256   gccggtgtaagatagttgttagccttatctggcaaatgagccac 299
             ||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct: 12439 gccggagtcagatagttgttcgccttgtctggcaaatgagccac 12482



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 425   cctgagagattctgtttccttgatcaaagatca 457
             ||||||| |||||||||||||||||||| ||||
Sbjct: 12933 cctgagaaattctgtttccttgatcaaatatca 12965

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>gb|AC026237.4|AC026237 Arabidopsis thaliana chromosome I BAC F17F16 genomic sequence, complete
             sequence
          Length = 90498

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Plus

                                                                         
Query: 346   acatcaaaacttttgtttctcgccgtggaatcatgcaatgctttgacacagatatctgct 405
             |||||||| ||||||||||| || || ||||| |||| ||| |||||||| ||||| || 
Sbjct: 75032 acatcaaagcttttgtttctggcggttgaatcgtgcagtgccttgacacatatatcagcc 75091

                     
Query: 406   acatccgc 413
             ||||||||
Sbjct: 75092 acatccgc 75099



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 40/44 (90%)
 Strand = Plus / Plus

                                                         
Query: 256   gccggtgtaagatagttgttagccttatctggcaaatgagccac 299
             ||||| || ||||||||||| ||||| |||||||||||||||||
Sbjct: 74716 gccggagtcagatagttgttcgccttgtctggcaaatgagccac 74759



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 31/33 (93%)
 Strand = Plus / Plus

                                              
Query: 425   cctgagagattctgtttccttgatcaaagatca 457
             ||||||| |||||||||||||||||||| ||||
Sbjct: 75210 cctgagaaattctgtttccttgatcaaatatca 75242

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>emb|AL160401.12| Human DNA sequence from clone RP11-442J1 on chromosome 6 Contains the
             3' end of the BAI3 gene for brain-specific angiogenesis
             inhibitor 3, complete sequence
          Length = 121606

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                     
Query: 46    aaaacaagagaatatagcagcatt 69
             ||||||||||||||||||||||||
Sbjct: 33643 aaaacaagagaatatagcagcatt 33666

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>gb|AC153865.3| Mus musculus  BAC RP23-373P9 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 180703

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 33    aggagaaagagtaaaaacaagagaatatag 62
             ||||||||||||||| |||| |||||||||
Sbjct: 90484 aggagaaagagtaaatacaacagaatatag 90513

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>gb|AC132256.3| Mus musculus BAC clone RP24-358I7 from chromosome 8, complete sequence
          Length = 163897

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 107   atgatctttacaagacaaaagg 128
             ||||||||||||||||||||||
Sbjct: 59494 atgatctttacaagacaaaagg 59473

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>gb|M16110.1|HUMAFP Homo sapiens alpha-fetoprotein gene, complete cds
          Length = 27553

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 161  agaaaaacatgtaactttacaagagg 186
            |||||||| |||||||||||||||||
Sbjct: 3417 agaaaaacttgtaactttacaagagg 3442

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>gb|AC135794.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0084H09, complete sequence
          Length = 130151

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 233   tgtttttctctagaaccgata 253
             |||||||||||||||||||||
Sbjct: 63620 tgtttttctctagaaccgata 63640

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>ref|XM_765697.1| Giardia lamblia ATCC 50803 hypothetical protein
           (GLP_23_24616_25470) partial mRNA
          Length = 855

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 324 ctcagaaacatactcatagca 344
           |||||||||||||||||||||
Sbjct: 27  ctcagaaacatactcatagca 7

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>emb|BX936333.10| Zebrafish DNA sequence from clone CH211-90O16 in linkage group 3,
              complete sequence
          Length = 167766

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 42     agtaaaaacaagagaatatag 62
              |||||||||||||||||||||
Sbjct: 113968 agtaaaaacaagagaatatag 113988

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>gb|AC112193.2| Homo sapiens chromosome 5 clone RP11-373F8, complete sequence
          Length = 173092

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 152    gcttctatgagaaaaacatgt 172
              |||||||||||||||||||||
Sbjct: 141559 gcttctatgagaaaaacatgt 141579

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 233     tgtttttctctagaaccgata 253
               |||||||||||||||||||||
Sbjct: 4091958 tgtttttctctagaaccgata 4091978

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>gb|AC093412.3| Homo sapiens chromosome 3 clone RP11-11L6, complete sequence
          Length = 178447

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 171    gtaactttacaagaggaagag 191
              |||||||||||||||||||||
Sbjct: 158765 gtaactttacaagaggaagag 158745

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 233     tgtttttctctagaaccgata 253
               |||||||||||||||||||||
Sbjct: 4100652 tgtttttctctagaaccgata 4100672

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>dbj|AP006081.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT32P24, TM0120,
              complete sequence
          Length = 137804

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 83     ttgttctgtgaagtgatcccattga 107
              |||||||||||| ||||||||||||
Sbjct: 132465 ttgttctgtgaattgatcccattga 132441

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>gb|AC163669.2| Mus musculus BAC clone RP23-29H1 from chromosome 12, complete sequence
          Length = 173903

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 71    cagtgacagaatttgttctgtgaa 94
             ||||||||| ||||||||||||||
Sbjct: 41211 cagtgacaggatttgttctgtgaa 41188

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>gb|AC132134.2| Mus musculus BAC clone RP23-267P6 from chromosome 5, complete sequence
          Length = 227078

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 99    tcccattgatgatctttacaagac 122
             ||||||||||||||||| ||||||
Sbjct: 90886 tcccattgatgatctttgcaagac 90863

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>gb|AC162307.5| Mus musculus BAC clone RP23-271I2 from chromosome 18, complete sequence
          Length = 196879

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 77    cagaatttgttctgtgaagt 96
             ||||||||||||||||||||
Sbjct: 39038 cagaatttgttctgtgaagt 39019

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>emb|AL117341.26|HSBA512N4 Human DNA sequence from clone RP11-512N4 on chromosome 10 Contains part
             of the gene for MOB protein, two novel genes and a CpG
             island, complete sequence
          Length = 181300

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 119   agacaaaagggcttgttgtgtgaa 142
             ||||||| ||||||||||||||||
Sbjct: 96139 agacaaaggggcttgttgtgtgaa 96116

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>emb|CR354591.13| Zebrafish DNA sequence from clone DKEY-18L4 in linkage group 24, complete
              sequence
          Length = 218314

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 221    atctgaatcaggtgtttttc 240
              ||||||||||||||||||||
Sbjct: 147681 atctgaatcaggtgtttttc 147700

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>gb|AC022523.7| Homo sapiens chromosome 15, clone RP11-183E24, complete sequence
          Length = 154471

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 32    aaggagaaagagtaaaaaca 51
             ||||||||||||||||||||
Sbjct: 38630 aaggagaaagagtaaaaaca 38649

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>gb|AC158384.2| Mus musculus BAC clone RP24-97I24 from chromosome 9, complete sequence
          Length = 163817

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 219   aaatctgaatcaggtgtttttctc 242
             ||||||||||||||| ||||||||
Sbjct: 75600 aaatctgaatcaggtatttttctc 75623

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>gb|AC092078.2|AC092078 Homo sapiens chromosome 15 clone CTD-2007H18 map 15q21.1, complete
             sequence
          Length = 113915

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ctcaaggagaaagagtaaaa 48
             ||||||||||||||||||||
Sbjct: 38027 ctcaaggagaaagagtaaaa 38046

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 234      gtttttctctagaaccgata 253
                ||||||||||||||||||||
Sbjct: 19049752 gtttttctctagaaccgata 19049733

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>gb|AC066611.6|AC066611 Homo sapiens chromosome 15 clone RP11-348P16 map 15q21.3, complete
             sequence
          Length = 184355

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 310   agttcattcccttgctcagaaaca 333
             |||||||| |||||||||||||||
Sbjct: 31155 agttcattgccttgctcagaaaca 31178

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>gb|AC145938.4| Pan troglodytes BAC clone RP43-18H20 from chromosome 7, complete
             sequence
          Length = 178210

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   gaatcaggtgtttttctcta 244
             ||||||||||||||||||||
Sbjct: 20271 gaatcaggtgtttttctcta 20252

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>gb|AC025167.6|AC025167 Homo sapiens chromosome 15 clone CTD-2556B7 map 15q21.1, complete
             sequence
          Length = 97990

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 29    ctcaaggagaaagagtaaaa 48
             ||||||||||||||||||||
Sbjct: 53666 ctcaaggagaaagagtaaaa 53685

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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702H08
          Length = 166899

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 234   gtttttctctagaaccgata 253
             ||||||||||||||||||||
Sbjct: 15169 gtttttctctagaaccgata 15150

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>gb|AC087732.11| Homo sapiens chromosome 15, clone RP11-565O12, complete sequence
          Length = 40080

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 371  tggaatcatgcaatgctttg 390
            ||||||||||||||||||||
Sbjct: 8229 tggaatcatgcaatgctttg 8248

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>dbj|AP004119.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1288_G09
          Length = 109672

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   acagctgatagcctgagaga 433
             ||||||||||||||||||||
Sbjct: 48973 acagctgatagcctgagaga 48954

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>emb|AL929009.5| Zebrafish DNA sequence from clone CH211-202A8 in linkage group 24,
             complete sequence
          Length = 208279

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 221   atctgaatcaggtgtttttc 240
             ||||||||||||||||||||
Sbjct: 36154 atctgaatcaggtgtttttc 36135

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>gb|AC107773.9| Mus musculus chromosome 18, clone RP23-102H15, complete sequence
          Length = 250096

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 77     cagaatttgttctgtgaagt 96
              ||||||||||||||||||||
Sbjct: 191773 cagaatttgttctgtgaagt 191754

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>gb|AC145956.4| Gallus gallus BAC clone CH261-14N1 from chromosome unknown, complete
             sequence
          Length = 243969

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 317   tcccttgctcagaaacatac 336
             ||||||||||||||||||||
Sbjct: 55547 tcccttgctcagaaacatac 55528

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>gb|AC154178.1| Mus musculus BAC clone RP23-465N18 from 17, complete sequence
          Length = 191399

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 377   catgcaatgctttgacacagatat 400
             ||||||||||||||||||| ||||
Sbjct: 72826 catgcaatgctttgacacatatat 72803

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>emb|AL935052.8| Zebrafish DNA sequence from clone CH211-168J10 in linkage group 12,
              complete sequence
          Length = 133195

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 113    tttacaagacaaaagggcttgttg 136
              ||||||||||||||||| ||||||
Sbjct: 127487 tttacaagacaaaagggattgttg 127510

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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 300     aagttcatacagttcattcc 319
               ||||||||||||||||||||
Sbjct: 1116208 aagttcatacagttcattcc 1116227


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,891,022
Number of Sequences: 3902068
Number of extensions: 4891022
Number of successful extensions: 94633
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94267
Number of HSP's gapped (non-prelim): 366
length of query: 483
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 461
effective length of database: 17,147,199,772
effective search space: 7904859094892
effective search space used: 7904859094892
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result