ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62h11
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O... 46 0.15
2ref|XM_966478.1| PREDICTED: Tribolium castaneum similar to CG312... 44 0.57
3dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 44 0.57
4gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I... 44 0.57
5gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21... 44 0.57
6gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resista... 42 2.3
7gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete... 42 2.3
8emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 i... 42 2.3
9ref|XM_678473.1| PREDICTED: Danio rerio similar to leucine-rich ... 42 2.3
10gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11... 42 2.3
11gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, co... 42 2.3
12gb|AC102324.9| Mus musculus chromosome 1, clone RP24-476A18, com... 40 9.0
13gb|AC161431.4| Mus musculus chromosome 7, clone RP24-306C18, com... 40 9.0
14gb|AC150577.4| Bos taurus BAC CH240-268P24 (Children's Hospital... 40 9.0
15ref|XM_569266.1| Cryptococcus neoformans var. neoformans JEC21 h... 40 9.0
16gb|AC137677.24| Mus musculus chromosome 1, clone RP23-257D12, co... 40 9.0
17gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromos... 40 9.0
18emb|CR385021.12| Zebrafish DNA sequence from clone CH211-200N15 ... 40 9.0
19gb|AC157542.11| Mus musculus chromosome 1, clone RP23-115I1, com... 40 9.0
20emb|BX321886.14| Zebrafish DNA sequence from clone DKEYP-46C9 in... 40 9.0
21gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.0
22gb|AC104836.2| Homo sapiens chromosome 1 clone RP4-621B10, compl... 40 9.0
23gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, comple... 40 9.0
24gb|AF208523.2| Pseudomonas aeruginosa strain PAO1 hydrogen cyani... 40 9.0
25gb|AC087463.5| Homo sapiens chromosome 15, clone RP11-682C24, co... 40 9.0
26ref|XM_694484.1| PREDICTED: Danio rerio similar to suppression o... 40 9.0
27gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, com... 40 9.0
28ref|NM_001037200.1| Rattus norvegicus similar to hypothetical pr... 40 9.0
29gb|AC144451.3| Homo sapiens fosmid clone XXFOS-8799H5 from 4, co... 40 9.0
30gb|AC092660.2| Homo sapiens BAC clone RP11-502A5 from 2, complet... 40 9.0
31gb|AE004646.1| Pseudomonas aeruginosa PAO1, section 207 of 529 o... 40 9.0
32gb|AC139362.2| Homo sapiens chromosome 15, clone RP11-580I1, com... 40 9.0
33dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome 40 9.0
34emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-6... 40 9.0
35gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phyt... 40 9.0
36gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phyt... 40 9.0
37gb|BC100261.1| Rattus norvegicus similar to hypothetical protein... 40 9.0
38emb|AM162207.1| Misopates orontium DEF gene for deficiens protein 40 9.0
39gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, co... 40 9.0
40gb|AC162449.4| Mus musculus chromosome 1, clone RP23-424E19, com... 40 9.0 
>gb|AC008833.5|AC008833 Homo sapiens chromosome 5 clone CTD-2146O16, complete sequence
          Length = 141894

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 217   tcccccactttcccttcaaacca 239
             |||||||||||||||||||||||
Sbjct: 21419 tcccccactttcccttcaaacca 21441
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>ref|XM_966478.1| PREDICTED: Tribolium castaneum similar to CG31291-PB, isoform B
            (LOC660228), mRNA
          Length = 1791

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 88   aaagacatgcaaaataaaatta 109
            ||||||||||||||||||||||
Sbjct: 1192 aaagacatgcaaaataaaatta 1213
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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 370  cagcagcagcagtttttccagc 391
            ||||||||||||||||||||||
Sbjct: 7006 cagcagcagcagtttttccagc 6985
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>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
             sequence
          Length = 132990

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 143   acagtaattccaaactgataaa 164
             ||||||||||||||||||||||
Sbjct: 95846 acagtaattccaaactgataaa 95867
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>gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete
             sequence
          Length = 89811

 Score = 44.1 bits (22), Expect = 0.57
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 143   acagtaattccaaactgataaa 164
             ||||||||||||||||||||||
Sbjct: 50304 acagtaattccaaactgataaa 50283
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>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete
              sequence
          Length = 282699

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 88     aaagacatgcaaaataaaatt 108
              |||||||||||||||||||||
Sbjct: 262197 aaagacatgcaaaataaaatt 262177
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>gb|AC098709.3| Mus musculus BAC clone RP23-1K14 from 1, complete sequence
          Length = 189774

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 144   cagtaattccaaactgataaa 164
             |||||||||||||||||||||
Sbjct: 14967 cagtaattccaaactgataaa 14947
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>emb|BX927322.12| Zebrafish DNA sequence from clone CH211-101J8 in linkage group 21,
             complete sequence
          Length = 110730

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 84    attcaaagacatgcaaaataa 104
             |||||||||||||||||||||
Sbjct: 44751 attcaaagacatgcaaaataa 44731
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>ref|XM_678473.1| PREDICTED: Danio rerio similar to leucine-rich repeats and calponin
            homology (CH) domain containing 3 (LOC555829), mRNA
          Length = 1680

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 335  gccccttcttcccagctggct 355
            |||||||||||||||||||||
Sbjct: 1447 gccccttcttcccagctggct 1467
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>gb|AC034257.3|AC034257 Arabidopsis thaliana chromosome I BAC F11A6 genomic sequence, complete
             sequence
          Length = 98950

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 88    aaagacatgcaaaataaaatt 108
             |||||||||||||||||||||
Sbjct: 75442 aaagacatgcaaaataaaatt 75462
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>gb|AC099712.21| Mus musculus chromosome 1, clone RP23-400C10, complete sequence
          Length = 196059

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 144   cagtaattccaaactgataaa 164
             |||||||||||||||||||||
Sbjct: 77018 cagtaattccaaactgataaa 77038
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>gb|AC102324.9| Mus musculus chromosome 1, clone RP24-476A18, complete sequence
          Length = 129634

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ctttcatcttagcatcaaaa 467
             ||||||||||||||||||||
Sbjct: 35689 ctttcatcttagcatcaaaa 35670
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>gb|AC161431.4| Mus musculus chromosome 7, clone RP24-306C18, complete sequence
          Length = 148949

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 340    ttcttcccagctggctcttgtcca 363
              ||||||||| ||||||||||||||
Sbjct: 142565 ttcttcccatctggctcttgtcca 142542
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>gb|AC150577.4| Bos taurus  BAC CH240-268P24 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 167618

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 325    cagctgggaagccccttcttccca 348
              ||||||||||||||||||| ||||
Sbjct: 143464 cagctgggaagccccttctgccca 143441
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>ref|XM_569266.1| Cryptococcus neoformans var. neoformans JEC21 hypothetical protein
            (CNB05180) partial mRNA
          Length = 2671

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 606  tcaacagcaggttcaaccat 625
            ||||||||||||||||||||
Sbjct: 1407 tcaacagcaggttcaaccat 1426
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>gb|AC137677.24| Mus musculus chromosome 1, clone RP23-257D12, complete sequence
          Length = 189162

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 448   ctttcatcttagcatcaaaa 467
             ||||||||||||||||||||
Sbjct: 65171 ctttcatcttagcatcaaaa 65190
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>gb|AC183622.3| Pan troglodytes BAC clone CH251-66G8 from chromosome 15, complete
             sequence
          Length = 206618

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   atatctaatcctttccttgt 309
             ||||||||||||||||||||
Sbjct: 74806 atatctaatcctttccttgt 74825
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>emb|CR385021.12| Zebrafish DNA sequence from clone CH211-200N15 in linkage group 16,
             complete sequence
          Length = 148046

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 85    ttcaaagacatgcaaaataa 104
             ||||||||||||||||||||
Sbjct: 15103 ttcaaagacatgcaaaataa 15122
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>gb|AC157542.11| Mus musculus chromosome 1, clone RP23-115I1, complete sequence
          Length = 211677

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ctttcatcttagcatcaaaa 467
             ||||||||||||||||||||
Sbjct: 88117 ctttcatcttagcatcaaaa 88098
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>emb|BX321886.14| Zebrafish DNA sequence from clone DKEYP-46C9 in linkage group 8, complete
              sequence
          Length = 168093

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 369    tcagcagcagcagtttttccagca 392
              ||||||||||||| ||||||||||
Sbjct: 163124 tcagcagcagcagcttttccagca 163101
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>gb|AE017342.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 2, complete
               sequence
          Length = 1632307

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 606     tcaacagcaggttcaaccat 625
               ||||||||||||||||||||
Sbjct: 1475311 tcaacagcaggttcaaccat 1475330
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>gb|AC104836.2| Homo sapiens chromosome 1 clone RP4-621B10, complete sequence
          Length = 142726

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 175   catcttctcaaaccttcaga 194
             ||||||||||||||||||||
Sbjct: 84605 catcttctcaaaccttcaga 84586
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>gb|AC097381.3| Homo sapiens BAC clone RP11-338K13 from 4, complete sequence
          Length = 214098

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 241   cagcaggccttccagcatcc 260
             ||||||||||||||||||||
Sbjct: 10177 cagcaggccttccagcatcc 10158
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>gb|AF208523.2| Pseudomonas aeruginosa strain PAO1 hydrogen cyanide synthase HcnA
           (hcnA), hydrogen cyanide synthase HcnB (hcnB), and
           hydrogen cyanide synthase HcnC (hcnC) genes, complete
           cds
          Length = 3300

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 378 gcagtttttccagcatccgg 397
           ||||||||||||||||||||
Sbjct: 658 gcagtttttccagcatccgg 639
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>gb|AC087463.5| Homo sapiens chromosome 15, clone RP11-682C24, complete sequence
          Length = 196918

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   atatctaatcctttccttgt 309
             ||||||||||||||||||||
Sbjct: 86891 atatctaatcctttccttgt 86910
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>ref|XM_694484.1| PREDICTED: Danio rerio similar to suppression of tumorigenicity 5
            (LOC570947), mRNA
          Length = 2646

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 369  tcagcagcagcagtttttccagca 392
            ||||||||||||| ||||||||||
Sbjct: 1254 tcagcagcagcagcttttccagca 1277
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>gb|AC087474.9| Homo sapiens chromosome 15, clone RP11-350A1, complete sequence
          Length = 185221

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   atatctaatcctttccttgt 309
             ||||||||||||||||||||
Sbjct: 53085 atatctaatcctttccttgt 53104
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>ref|NM_001037200.1| Rattus norvegicus similar to hypothetical protein FLJ32954
            (LOC313840), mRNA
          Length = 2012

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   tgcaaaataaaattaactgt 114
            ||||||||||||||||||||
Sbjct: 1219 tgcaaaataaaattaactgt 1238
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>gb|AC144451.3| Homo sapiens fosmid clone XXFOS-8799H5 from 4, complete sequence
          Length = 39893

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 241  cagcaggccttccagcatcc 260
            ||||||||||||||||||||
Sbjct: 8884 cagcaggccttccagcatcc 8903
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>gb|AC092660.2| Homo sapiens BAC clone RP11-502A5 from 2, complete sequence
          Length = 154704

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 173    tccatcttctcaaaccttca 192
              ||||||||||||||||||||
Sbjct: 124446 tccatcttctcaaaccttca 124465
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>gb|AE004646.1| Pseudomonas aeruginosa PAO1, section 207 of 529 of the complete
            genome
          Length = 11244

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 378  gcagtttttccagcatccgg 397
            ||||||||||||||||||||
Sbjct: 1491 gcagtttttccagcatccgg 1472
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>gb|AC139362.2| Homo sapiens chromosome 15, clone RP11-580I1, complete sequence
          Length = 195033

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 290   atatctaatcctttccttgt 309
             ||||||||||||||||||||
Sbjct: 49020 atatctaatcctttccttgt 49039
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>dbj|BA000026.2| Mycoplasma penetrans HF-2 DNA, complete genome
          Length = 1358633

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 377    agcagtttttccagcatccg 396
              ||||||||||||||||||||
Sbjct: 832602 agcagtttttccagcatccg 832621
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>emb|AL117356.5|CNS01DRK Human chromosome 14 DNA sequence BAC R-606A16 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 178062

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 523    cgtggccacctttgtattta 542
              ||||||||||||||||||||
Sbjct: 116921 cgtggccacctttgtattta 116940
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>gb|U31284.1|MCU31284 Mesotaenium caldariorum clone mesphy1b phytochrome gene, complete cds
          Length = 10878

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 220  cccactttcccttcaaacca 239
            ||||||||||||||||||||
Sbjct: 5498 cccactttcccttcaaacca 5517
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>gb|U31283.1|MCU31283 Mesotaenium caldariorum clone mesphy1a phytochrome gene, partial
           cds, exons 4 through 10
          Length = 4727

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 220 cccactttcccttcaaacca 239
           ||||||||||||||||||||
Sbjct: 755 cccactttcccttcaaacca 774
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>gb|BC100261.1| Rattus norvegicus similar to hypothetical protein FLJ32954, mRNA
            (cDNA clone MGC:116304 IMAGE:7368645), complete cds
          Length = 2012

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 95   tgcaaaataaaattaactgt 114
            ||||||||||||||||||||
Sbjct: 1219 tgcaaaataaaattaactgt 1238
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>emb|AM162207.1| Misopates orontium DEF gene for deficiens protein
          Length = 5073

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   acatgcaaaataaaattaac 111
            ||||||||||||||||||||
Sbjct: 1102 acatgcaaaataaaattaac 1121
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>gb|AC162175.10| Mus musculus chromosome 7, clone RP23-327E18, complete sequence
          Length = 224178

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 340    ttcttcccagctggctcttgtcca 363
              ||||||||| ||||||||||||||
Sbjct: 197786 ttcttcccatctggctcttgtcca 197809
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>gb|AC162449.4| Mus musculus chromosome 1, clone RP23-424E19, complete sequence
          Length = 184609

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 448   ctttcatcttagcatcaaaa 467
             ||||||||||||||||||||
Sbjct: 37239 ctttcatcttagcatcaaaa 37220


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,829,009
Number of Sequences: 3902068
Number of extensions: 6829009
Number of successful extensions: 131237
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131070
Number of HSP's gapped (non-prelim): 167
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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