>GIDB_PORGI (Q7MV10) Methyltransferase gidB (EC 2.1.-.-) (Glucose-inhibited|
           division protein B)
          Length = 221

 Score = 32.3 bits (72), Expect = 0.51
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = -3

Query: 359 PHL*RSRAQKAWNNGGRGGCLRRSVSGISRPVINNAFSICVVLHSIHIAPLR*FVEGVSL 180
           PHL   + ++    GG        ++ ISR  I+N + +  VLHS+ IA +  F  G S+
Sbjct: 23  PHLSERQREQFEQMGGLYTHWNALINVISRKDIDNLY-LHHVLHSLGIARMLNFKPGTSV 81

Query: 179 IKLGTG 162
           + LGTG
Sbjct: 82  LDLGTG 87

>SYMM_XENLA (Q7T0Z0) Methionyl-tRNA synthetase, mitochondrial precursor (EC|
           6.1.1.10) (Methionine--tRNA ligase 2) (Mitochondrial
           methionine--tRNA ligase) (MtMetRS)
          Length = 562

 Score = 29.6 bits (65), Expect = 3.3
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -3

Query: 419 EPVRPAHSFRFCHHWCQRTTPHL--*RSRAQKAW 324
           EPV PA   +  HHW +   P L   R R++ +W
Sbjct: 217 EPVHPAPFLKLVHHWLEEELPDLSVSRQRSRLSW 250

>IF2_MYCLE (Q9Z5I9) Translation initiation factor IF-2|
          Length = 924

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 279 TTHAPTQASSSPSVIPSFLGTRPSQVWCSSLAPMMTEP 392
           TT AP Q   S +V+P   G  PS      LAP   +P
Sbjct: 96  TTAAPVQVDHSAAVVPIVAGEGPSTAHREELAPPAGQP 133

>NU3M_ALBCO (P48907) NADH-ubiquinone oxidoreductase chain 3 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 3)
          Length = 117

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 14/29 (48%), Positives = 24/29 (82%), Gaps = 3/29 (10%)
 Frame = -3

Query: 155 LLFYIELIL---VLAMFSFLSSPVIIISM 78
           L+F +E++L   VL+M SF++SP+II+S+
Sbjct: 64  LIFDVEVVLLFPVLSMVSFMTSPLIIMSI 92

>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1887

 Score = 28.9 bits (63), Expect = 5.7
 Identities = 21/82 (25%), Positives = 31/82 (37%)
 Frame = +3

Query: 165  SPQFDQAHPLHESSKGGDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGTR 344
            SP   Q  P ++ S  G  Y          +  Y P +T ++PT    SP+  P+     
Sbjct: 1799 SPSSPQHSPSNQYSPTGSTYSATSPRYSPNMSIYSPSSTKYSPT----SPTYTPTARNYS 1854

Query: 345  PSQVWCSSLAPMMTEPERVCWS 410
            P+    S  AP    P    +S
Sbjct: 1855 PTSPMYSPTAPSHYSPTSPAYS 1876

>YJDC_MOUSE (Q8K2D3) YjeF domain-containing protein 1|
          Length = 508

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
 Frame = +3

Query: 180 QAHPLHESSKG--GDMYRM*DNANGKGIVYYRPRNTTHAPTQASSSPSVIPSFLGTRPSQ 353
           Q   LH++  G  G  Y+M  + NG G V  +P +++ AP        V    +   P Q
Sbjct: 75  QVGDLHQTELGPSGVGYQMSISQNGTGKVVKKPASSSSAPQSIPKRTDVKSQDVAISPQQ 134

Query: 354 VWCS 365
             CS
Sbjct: 135 QQCS 138

>PHF1_MOUSE (Q9Z1B8) PHD finger protein 1 (PHF1 protein) (T-complex|
           testis-expressed 3) (Polycomblike 1) (mPCl1)
          Length = 559

 Score = 28.5 bits (62), Expect = 7.4
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 270 PRNTTHAPTQASSS-PSVIPSFLGTRPSQVWCSSLAP 377
           P+++ H+ T +SSS P++ P F    P    C SL+P
Sbjct: 479 PKSSPHSVTASSSSVPALTPGFSRHSPPSPLCRSLSP 515


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,775,806
Number of Sequences: 219361
Number of extensions: 1175849
Number of successful extensions: 2787
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2764
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2511994855
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)