Clone Name | rbah62h03 |
---|---|
Clone Library Name | barley_pub |
>gb|BT009445.1| Triticum aestivum clone wlmk8.pk0008.e8:fis, full insert mRNA sequence Length = 2162 Score = 391 bits (197), Expect = e-105 Identities = 218/225 (96%) Strand = Plus / Minus Query: 210 gactcccaaaacccagttgctattgatgtttataaggtgtgctcaatactctttcgacaa 269 |||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| Sbjct: 2134 gactcccaaaacccagttgctattgatgcttataaggtgtgctccatactctttcgacaa 2075 Query: 270 gttaatacagcacacaaacgcttctgacaaaaaccgacacaaccgacaaccgtgaatacc 329 |||||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||| Sbjct: 2074 gttaatacagcacagaaacgcatctgacaaaaaccgacacaaccgacaaccgtgaaaacc 2015 Query: 330 ctatctttcaaggttctttttacctcacacagatatatcaatataaatttggttcaagct 389 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct: 2014 ctatctttcaaggttctttttacctcacacagatatatcaatataattttggttcaagct 1955 Query: 390 atataggaggcaaaacccaactctcccgacaacacatgcggctct 434 |||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 1954 atataggaggcaaaacccgactctcccgacaacacatgcggctct 1910
>gb|AC087551.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0431G05, complete sequence Length = 145044 Score = 79.8 bits (40), Expect = 7e-12 Identities = 96/111 (86%), Gaps = 9/111 (8%) Strand = Plus / Plus Query: 181 acaacaaaccaacgaat----agaccagcatgggact---cccaaaacccagttgcta-t 232 |||||||||||| |||| |||||||||||||||| || ||||||||||||||| | Sbjct: 68748 acaacaaaccaatgaatagacagaccagcatgggactccaccaaaaacccagttgctatt 68807 Query: 233 tgatgtttataaggtgtgctcaatactctttcgacaagttaatacagcaca 283 ||||||||||||| ||||| |||||||||| |||| |||||||||||||| Sbjct: 68808 tgatgtttataagttgtgc-caatactcttctgacatgttaatacagcaca 68857 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 327 accctatctttcaaggttctttttacctca 356 |||||||||||||||||||||||||||||| Sbjct: 68894 accctatctttcaaggttctttttacctca 68923 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 410 ctctcccgacaacacatgcggctct 434 ||||||||||||||| ||||||||| Sbjct: 68983 ctctcccgacaacacctgcggctct 69007
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 79.8 bits (40), Expect = 7e-12 Identities = 96/111 (86%), Gaps = 9/111 (8%) Strand = Plus / Plus Query: 181 acaacaaaccaacgaat----agaccagcatgggact---cccaaaacccagttgcta-t 232 |||||||||||| |||| |||||||||||||||| || ||||||||||||||| | Sbjct: 3191031 acaacaaaccaatgaatagacagaccagcatgggactccaccaaaaacccagttgctatt 3191090 Query: 233 tgatgtttataaggtgtgctcaatactctttcgacaagttaatacagcaca 283 ||||||||||||| ||||| |||||||||| |||| |||||||||||||| Sbjct: 3191091 tgatgtttataagttgtgc-caatactcttctgacatgttaatacagcaca 3191140 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Plus Query: 327 accctatctttcaaggttctttttacctca 356 |||||||||||||||||||||||||||||| Sbjct: 3191177 accctatctttcaaggttctttttacctca 3191206 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Plus Query: 410 ctctcccgacaacacatgcggctct 434 ||||||||||||||| ||||||||| Sbjct: 3191266 ctctcccgacaacacctgcggctct 3191290
>dbj|AK120498.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013121O08, full insert sequence Length = 687 Score = 79.8 bits (40), Expect = 7e-12 Identities = 96/111 (86%), Gaps = 9/111 (8%) Strand = Plus / Minus Query: 181 acaacaaaccaacgaat----agaccagcatgggact---cccaaaacccagttgcta-t 232 |||||||||||| |||| |||||||||||||||| || ||||||||||||||| | Sbjct: 342 acaacaaaccaatgaatagacagaccagcatgggactccaccaaaaacccagttgctatt 283 Query: 233 tgatgtttataaggtgtgctcaatactctttcgacaagttaatacagcaca 283 ||||||||||||| ||||| |||||||||| |||| |||||||||||||| Sbjct: 282 tgatgtttataagttgtgc-caatactcttctgacatgttaatacagcaca 233 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 327 accctatctttcaaggttctttttacctca 356 |||||||||||||||||||||||||||||| Sbjct: 196 accctatctttcaaggttctttttacctca 167 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 ctctcccgacaacacatgcggctct 434 ||||||||||||||| ||||||||| Sbjct: 107 ctctcccgacaacacctgcggctct 83
>dbj|AK100133.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010D07, full insert sequence Length = 2275 Score = 79.8 bits (40), Expect = 7e-12 Identities = 96/111 (86%), Gaps = 9/111 (8%) Strand = Plus / Minus Query: 181 acaacaaaccaacgaat----agaccagcatgggact---cccaaaacccagttgcta-t 232 |||||||||||| |||| |||||||||||||||| || ||||||||||||||| | Sbjct: 2256 acaacaaaccaatgaatagacagaccagcatgggactccaccaaaaacccagttgctatt 2197 Query: 233 tgatgtttataaggtgtgctcaatactctttcgacaagttaatacagcaca 283 ||||||||||||| ||||| |||||||||| |||| |||||||||||||| Sbjct: 2196 tgatgtttataagttgtgc-caatactcttctgacatgttaatacagcaca 2147 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 327 accctatctttcaaggttctttttacctca 356 |||||||||||||||||||||||||||||| Sbjct: 2110 accctatctttcaaggttctttttacctca 2081 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 ctctcccgacaacacatgcggctct 434 ||||||||||||||| ||||||||| Sbjct: 2021 ctctcccgacaacacctgcggctct 1997
>dbj|AB024311.1| Oryza sativa (japonica cultivar-group) mRNA for importin alpha 1b, complete cds Length = 2632 Score = 79.8 bits (40), Expect = 7e-12 Identities = 96/111 (86%), Gaps = 9/111 (8%) Strand = Plus / Minus Query: 181 acaacaaaccaacgaat----agaccagcatgggact---cccaaaacccagttgcta-t 232 |||||||||||| |||| |||||||||||||||| || ||||||||||||||| | Sbjct: 2268 acaacaaaccaatgaatagacagaccagcatgggactccaccaaaaacccagttgctatt 2209 Query: 233 tgatgtttataaggtgtgctcaatactctttcgacaagttaatacagcaca 283 ||||||||||||| ||||| |||||||||| |||| |||||||||||||| Sbjct: 2208 tgatgtttataagttgtgc-caatactcttctgacatgttaatacagcaca 2159 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 327 accctatctttcaaggttctttttacctca 356 |||||||||||||||||||||||||||||| Sbjct: 2122 accctatctttcaaggttctttttacctca 2093 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 410 ctctcccgacaacacatgcggctct 434 ||||||||||||||| ||||||||| Sbjct: 2033 ctctcccgacaacacctgcggctct 2009
>gb|AY103821.1| Zea mays PCO084551 mRNA sequence Length = 2318 Score = 46.1 bits (23), Expect = 0.095 Identities = 32/34 (94%), Gaps = 2/34 (5%) Strand = Plus / Minus Query: 391 tataggaggcaaaacccaactctcccgacaacac 424 ||||||||||||||||||| ||||||||||||| Sbjct: 2019 tataggaggcaaaacccaa--ctcccgacaacac 1988 Score = 44.1 bits (22), Expect = 0.37 Identities = 25/26 (96%) Strand = Plus / Minus Query: 328 ccctatctttcaaggttctttttacc 353 ||||||||||||||||||||| |||| Sbjct: 2077 ccctatctttcaaggttctttctacc 2052
>gb|AC171134.2| Helobdella robusta clone CH306-1A5, complete sequence Length = 95814 Score = 44.1 bits (22), Expect = 0.37 Identities = 22/22 (100%) Strand = Plus / Minus Query: 355 cacacagatatatcaatataaa 376 |||||||||||||||||||||| Sbjct: 42735 cacacagatatatcaatataaa 42714
>gb|AC009223.2| Homo sapiens BAC clone RP11-24K2 from 2, complete sequence Length = 182144 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 tttacctcacacagatatatc 368 ||||||||||||||||||||| Sbjct: 43235 tttacctcacacagatatatc 43215
>gb|AC107881.16| Homo sapiens chromosome 11, clone CTD-2007B22, complete sequence Length = 147727 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 92 atacaactactctttcactaa 112 ||||||||||||||||||||| Sbjct: 103183 atacaactactctttcactaa 103163
>gb|AC133461.12| Mus musculus chromosome 15, clone RP23-52B2, complete sequence Length = 176450 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 32764 gaacaatctccaaacagagt 32745
>gb|AC122560.8| Mus musculus chromosome 15, clone RP24-93E14, complete sequence Length = 174003 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 8976 gaacaatctccaaacagagt 8957
>gb|AC155264.2| Mus musculus BAC clone RP23-281B4 from chromosome 16, complete sequence Length = 199531 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 18658 gaacaatctccaaacagagt 18639
>gb|CP000153.1| Thiomicrospira denitrificans ATCC 33889, complete genome Length = 2201561 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 346 tttttacctcacacagatat 365 |||||||||||||||||||| Sbjct: 49511 tttttacctcacacagatat 49530
>gb|AC169510.1| Mus musculus BAC clone RP23-121E6 from chromosome 14, complete sequence Length = 214403 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 98816 gaacaatctccaaacagagt 98835
>gb|AC153633.10| Mus musculus 6 BAC RP23-13K24 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 216841 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 89661 gaacaatctccaaacagagt 89680
>gb|AC119244.12| Mus musculus chromosome 5, clone RP24-231P10, complete sequence Length = 210235 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 71502 gaacaatctccaaacagagt 71521
>gb|AC163093.5| Mus musculus chromosome 18, clone RP23-144P22, complete sequence Length = 195116 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 169 cctgtggaacatacaacaaa 188 |||||||||||||||||||| Sbjct: 114524 cctgtggaacatacaacaaa 114505
>gb|AC153878.11| Mus musculus 6 BAC RP23-229B22 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 185647 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 183955 gaacaatctccaaacagagt 183936
>gb|AC110908.13| Mus musculus chromosome 7, clone RP24-181E10, complete sequence Length = 173230 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 116141 ggaacaatctccaaacagag 116160
>gb|AC166779.3| Mus musculus chromosome 18, clone RP23-399N10, complete sequence Length = 200851 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 148542 gaacaatctccaaacagagt 148523
>gb|AC129203.4| Mus musculus BAC clone RP24-225M1 from chromosome 16, complete sequence Length = 152208 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 99179 gaacaatctccaaacagagt 99160
>gb|AC133908.7| Mus musculus chromosome 5, clone RP24-299L9, complete sequence Length = 214270 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 106389 gaacaatctccaaacagagt 106408
>gb|AC124680.10| Mus musculus chromosome 14, clone RP23-383A19, complete sequence Length = 202809 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 93080 gaacaatctccaaacagagt 93099
>emb|CT009532.6| Mouse DNA sequence from clone RP23-122B16 on chromosome 14, complete sequence Length = 187658 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 183239 gaacaatctccaaacagagt 183220
>gb|AC132596.5| Mus musculus BAC clone RP24-173K19 from chromosome 12, complete sequence Length = 183629 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 80239 gaacaatctccaaacagagt 80258
>gb|AC112149.4| Mus musculus BAC clone RP23-186F18 from chromosome 10, complete sequence Length = 195384 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 55619 ggaacaatctccaaacagag 55600
>gb|AC121807.3| Mus musculus BAC clone RP23-448N11 from chromosome 16, complete sequence Length = 178155 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 67547 gaacaatctccaaacagagt 67566
>gb|AC124178.3| Mus musculus BAC clone RP23-193J15 from 18, complete sequence Length = 206833 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 148422 gaacaatctccaaacagagt 148441
>gb|AC127327.4| Mus musculus BAC clone RP23-254M18 from 5, complete sequence Length = 198433 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 13619 gaacaatctccaaacagagt 13638
>gb|AC110820.4| Mus musculus BAC clone RP23-273L3 from 15, complete sequence Length = 168415 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 108003 gaacaatctccaaacagagt 107984
>gb|AC098727.3| Mus musculus BAC clone RP23-3H16 from 4, complete sequence Length = 231302 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 13903 gaacaatctccaaacagagt 13884
>gb|AC163450.5| Mus musculus chromosome 1, clone RP23-209F20, complete sequence Length = 182102 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 164263 gaacaatctccaaacagagt 164282
>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence Length = 122694 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 tattgatgtttataaggtgt 249 |||||||||||||||||||| Sbjct: 38498 tattgatgtttataaggtgt 38479
>gb|AC114600.4| Mus musculus chromosome 5, clone RP23-332O18, complete sequence Length = 203401 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 160524 gaacaatctccaaacagagt 160543
>gb|AC159224.6| Mus musculus chromosome 8, clone RP24-180O7, complete sequence Length = 171002 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 158208 gaacaatctccaaacagagt 158189
>gb|AC158771.2| Mus musculus chromosome 15, clone RP23-450E19, complete sequence Length = 199600 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 16258 gaacaatctccaaacagagt 16277
>emb|AL772195.4| Mouse DNA sequence from clone RP23-218C5 on chromosome 11 Contains the 5' end of the Ugp2 gene for UDP-glucose pyrophosphorylase 2, two novel genes, a cytoplasmic dynein light chain 1 (Dnclc1) pseudogene, a RAB5A member RAS oncogene family (Rab5a) pseudogene, a novel pseudogene and a CpG island, complete sequence Length = 173182 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 137533 gaacaatctccaaacagagt 137552
>emb|AL646055.10| Mouse DNA sequence from clone RP23-382C18 on chromosome 11 Contains a aldo-keto reductase family 1 member B3 (aldose reductase) (Akr1b3) pseudogene, the gene for a novel protein similar to human methionine adenosyltransferase II beta (MAT2B), the Hmmr gene for hyaluronan mediated motility receptor (RHAMM), the gene for a novel protein (D11Ertd603e), the Ccng1 gene for cyclin G1 and three CpG islands, complete sequence Length = 193551 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 7642 gaacaatctccaaacagagt 7661
>gb|AC154568.2| Mus musculus BAC clone RP23-246L11 from chromosome 16, complete sequence Length = 182206 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 178732 gaacaatctccaaacagagt 178713
>gb|AC158639.8| Mus musculus 10 BAC RP24-73H17 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 199191 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 38489 gaacaatctccaaacagagt 38508
>gb|AC083909.20|AC083909 Mus musculus 1 BAC RP23-424A2 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 204857 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 65971 gaacaatctccaaacagagt 65990
>gb|AC158807.11| Mus musculus 10 BAC RP24-64G24 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 228073 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 32044 ggaacaatctccaaacagag 32063
>gb|AC110527.13| Mus musculus chromosome 1, clone RP23-204H10, complete sequence Length = 173497 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 103424 gaacaatctccaaacagagt 103443
>gb|AC154322.1| Mus musculus BAC clone RP23-299P17 from chromosome 14, complete sequence Length = 182146 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 27209 gaacaatctccaaacagagt 27228
>gb|AC072031.18| Homo sapiens 3 BAC RP11-392N12 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 96901 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 223 cagttgctattgatgtttat 242 |||||||||||||||||||| Sbjct: 56831 cagttgctattgatgtttat 56812
>emb|AL929061.31| Mouse DNA sequence from clone RP23-402A18 on chromosome X, complete sequence Length = 146071 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 132800 gaacaatctccaaacagagt 132819
>emb|BX544887.4| Mouse DNA sequence from clone RP23-462P24 on chromosome X, complete sequence Length = 77800 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 54576 gaacaatctccaaacagagt 54557
>gb|AC132578.3| Mus musculus BAC clone RP24-458M10 from 8, complete sequence Length = 147287 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 69393 gaacaatctccaaacagagt 69412
>emb|AL592062.11| Zebrafish DNA sequence from clone XX-6CSE, complete sequence Length = 106778 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 atatatcaatataaatttgg 381 |||||||||||||||||||| Sbjct: 5943 atatatcaatataaatttgg 5962
>gb|AC149271.5| Mus musculus chromosome 7, clone RP23-216J17, complete sequence Length = 213512 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 13077 ggaacaatctccaaacagag 13096
>gb|AC153635.4| Mus musculus 6 BAC RP23-392I2 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 189373 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 185868 gaacaatctccaaacagagt 185849
>gb|AC155284.7| Mus musculus 6 BAC RP23-241L3 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 205924 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 30424 gaacaatctccaaacagagt 30405
>gb|AC154730.3| Mus musculus BAC clone RP23-120M21 from chromosome 14, complete sequence Length = 217242 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 20751 gaacaatctccaaacagagt 20732
>gb|AC124118.15| Mus musculus chromosome 3, clone RP23-152K14, complete sequence Length = 199667 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 40681 gaacaatctccaaacagagt 40662
>gb|AC111036.6| Mus musculus chromosome 18, clone RP24-80E15, complete sequence Length = 216052 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 73596 gaacaatctccaaacagagt 73615
>gb|AC102764.12| Mus musculus chromosome 8, clone RP24-266L17, complete sequence Length = 185178 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 179725 gaacaatctccaaacagagt 179744
>gb|AC161875.5| Mus musculus BAC clone RP24-349D15 from chromosome 16, complete sequence Length = 163441 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 130399 gaacaatctccaaacagagt 130418
>gb|AC122507.5| Mus musculus BAC clone RP24-426K19 from 12, complete sequence Length = 188715 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 79632 gaacaatctccaaacagagt 79613
>emb|CT009765.9| Mouse DNA sequence from clone RP23-235B7 on chromosome 12, complete sequence Length = 197822 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 133397 ggaacaatctccaaacagag 133378
>gb|AC123062.4| Mus musculus BAC clone RP23-218A9 from 13, complete sequence Length = 186601 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 95226 gaacaatctccaaacagagt 95207
>gb|AC140301.3| Mus musculus BAC clone RP23-435M8 from 5, complete sequence Length = 197633 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 1768 gaacaatctccaaacagagt 1787
>gb|AC150034.2| Mus musculus BAC clone RP23-428H16 from 16, complete sequence Length = 187989 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 161989 gaacaatctccaaacagagt 162008
>gb|AC124126.14| Mus musculus chromosome 18, clone RP23-377C8, complete sequence Length = 192355 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 170548 gaacaatctccaaacagagt 170529
>gb|AC140676.3| Mus musculus BAC clone RP23-124A12 from 6, complete sequence Length = 197819 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 143791 gaacaatctccaaacagagt 143810
>gb|AC147567.3| Mus musculus BAC clone RP23-107E14 from 6, complete sequence Length = 191770 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 93206 gaacaatctccaaacagagt 93187
>emb|AL732498.15| Mouse DNA sequence from clone RP23-323E6 on chromosome 4, complete sequence Length = 145881 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 36082 gaacaatctccaaacagagt 36063
>emb|AL691475.18| Mouse DNA sequence from clone RP23-264P11 on chromosome 4 Contains part of the Astn2 gene for astrotactin 2 and a CpG island, complete sequence Length = 174567 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 52525 gaacaatctccaaacagagt 52506
>emb|AL772315.4| Mouse DNA sequence from clone RP23-54A13 on chromosome 4, complete sequence Length = 200266 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 132572 ggaacaatctccaaacagag 132591
>emb|AL663095.14| Mouse DNA sequence from clone RP23-211M16 on chromosome X, complete sequence Length = 217249 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 163536 gaacaatctccaaacagagt 163555 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 65649 gaacaatctccaaacagagt 65668
>emb|AL669973.10| Mouse DNA sequence from clone RP23-256C17 on chromosome X, complete sequence Length = 179173 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 86284 gaacaatctccaaacagagt 86303
>emb|AL732634.13| Mouse DNA sequence from clone RP23-322G19 on chromosome 4, complete sequence Length = 203176 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ggaacaatctccaaacagag 142 |||||||||||||||||||| Sbjct: 2012 ggaacaatctccaaacagag 2031
>emb|AL807250.9| Mouse DNA sequence from clone RP23-99K18 on chromosome X, complete sequence Length = 141025 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 58726 gaacaatctccaaacagagt 58707
>emb|AL627432.26| Mouse DNA sequence from clone RP23-45I5 on chromosome X, complete sequence Length = 127007 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 3467 gaacaatctccaaacagagt 3486
>emb|AL365333.13| Mouse DNA sequence from clone RP21-490L20 on chromosome X, complete sequence Length = 151792 Score = 40.1 bits (20), Expect = 5.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 gaacaatctccaaacagagt 143 |||||||||||||||||||| Sbjct: 72854 gaacaatctccaaacagagt 72873 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,281,809 Number of Sequences: 3902068 Number of extensions: 3281809 Number of successful extensions: 61103 Number of sequences better than 10.0: 75 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60900 Number of HSP's gapped (non-prelim): 188 length of query: 434 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 412 effective length of database: 17,147,199,772 effective search space: 7064646306064 effective search space used: 7064646306064 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)