>RNHL_NEUCR (Q9P5X8) Probable ribonuclease HI large subunit (EC 3.1.26.4)|
           (RNase HI large subunit) (RNase H(35))
          Length = 317

 Score = 28.5 bits (62), Expect = 5.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 3/38 (7%)
 Frame = -1

Query: 109 LWTEFPMKRWIIGLPCDSAVLFWFNRLFHPLF---PKC 5
           LW +  M  W  G P DS  + W  +  HP+F   P+C
Sbjct: 218 LWADRTMA-WGSGYPSDSKCVSWLKQNMHPVFGWGPEC 254


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,538,563
Number of Sequences: 219361
Number of extensions: 534412
Number of successful extensions: 1318
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1318
length of database: 80,573,946
effective HSP length: 38
effective length of database: 72,238,228
effective search space used: 1733717472
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)