ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62g21 |
|---|---|
| Clone Library Name | barley_pub |
>PYRB_STRP8 (Q8P1G1) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 311 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 228 EDHDYHQHXSRRRWYDSYGYTIGMYVNFKNCECWXRHLWPVGSSCTVKQSW-EPPRARMM 52 E HD HQ S+ ++ ++G T Y K+ H PV + S E P+AR++ Sbjct: 228 ERHDGHQSFSKEGYHQAFGLTQERYQQLKD-SAIIMHPAPVNRDVEIADSLVEAPKARIV 286 Query: 51 TFM 43 + M Sbjct: 287 SQM 289
>PYRB_STRP6 (Q5XCR9) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 311 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 228 EDHDYHQHXSRRRWYDSYGYTIGMYVNFKNCECWXRHLWPVGSSCTVKQSW-EPPRARMM 52 E HD HQ S+ ++ ++G T Y K+ H PV + S E P+AR++ Sbjct: 228 ERHDGHQSFSKEGYHQAFGLTQERYQQLKD-SAIIMHPAPVNRDVEIADSLVEAPKARIV 286 Query: 51 TFM 43 + M Sbjct: 287 SQM 289
>PYRB_STRP3 (P65621) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 311 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 228 EDHDYHQHXSRRRWYDSYGYTIGMYVNFKNCECWXRHLWPVGSSCTVKQSW-EPPRARMM 52 E HD HQ S+ ++ ++G T Y K+ H PV + S E P+AR++ Sbjct: 228 ERHDGHQSFSKEGYHQAFGLTQERYQQLKD-SAIIMHPAPVNRDVEIADSLVEAPKARIV 286 Query: 51 TFM 43 + M Sbjct: 287 SQM 289
>PYRB_STRP1 (P65620) Aspartate carbamoyltransferase (EC 2.1.3.2) (Aspartate| transcarbamylase) (ATCase) Length = 311 Score = 29.3 bits (64), Expect = 2.5 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%) Frame = -1 Query: 228 EDHDYHQHXSRRRWYDSYGYTIGMYVNFKNCECWXRHLWPVGSSCTVKQSW-EPPRARMM 52 E HD HQ S+ ++ ++G T Y K+ H PV + S E P+AR++ Sbjct: 228 ERHDGHQSFSKEGYHQAFGLTQERYQQLKD-SAIIMHPAPVNRDVEIADSLVEAPKARIV 286 Query: 51 TFM 43 + M Sbjct: 287 SQM 289
>MURG1_BACHK (Q6HEQ4) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase 1) Length = 364 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 163 RYVCKF*KL*MLGPSFVACGVVLYRKAKLGAP 68 RY+ +F ++G CG V+Y AKLG P Sbjct: 86 RYIRRFNPDIVIGTGGYVCGPVVYAAAKLGIP 117
>MURG1_BACCR (Q812W5) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase 1) Length = 364 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 163 RYVCKF*KL*MLGPSFVACGVVLYRKAKLGAP 68 RY+ +F ++G CG V+Y AKLG P Sbjct: 86 RYIRRFNPDIVIGTGGYVCGPVVYAAAKLGIP 117
>MURG1_BACC1 (Q732F8) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase 1) Length = 364 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 163 RYVCKF*KL*MLGPSFVACGVVLYRKAKLGAP 68 RY+ +F ++G CG V+Y AKLG P Sbjct: 86 RYIRRFNPDIVIGTGGYVCGPVVYAAAKLGIP 117
>MURG1_BACAN (Q81JG5) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)| pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 1 (EC 2.4.1.227) (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase 1) Length = 364 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = -3 Query: 163 RYVCKF*KL*MLGPSFVACGVVLYRKAKLGAP 68 RY+ +F ++G CG V+Y AKLG P Sbjct: 86 RYIRRFNPDIVIGTGGYVCGPVVYAAAKLGIP 117
>MLB3_VISAL (P87800) N-acetyl-D-galactosamine-specific lectin III B chain| (ML-3B) (ML-III B) Length = 262 Score = 27.3 bits (59), Expect = 9.7 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 2/40 (5%) Frame = -1 Query: 201 SRRRWYDSYGYTIGMYVNFKNCECWXRH--LWPVGSSCTV 88 S R +YGYT G+YV +C R LW + + T+ Sbjct: 59 SNGRCLTTYGYTAGVYVMIFDCNTAVREATLWQIWGNGTI 98
>ECTA_BORBR (Q7WHI7) L-2,4-diaminobutyric acid acetyltransferase (EC 2.3.1.-)| (DABA acetyltransferase) Length = 186 Score = 27.3 bits (59), Expect = 9.7 Identities = 12/29 (41%), Positives = 15/29 (51%) Frame = +3 Query: 51 SSSVLGGAPSFALRYKTTPQATNDGPNIH 137 S + P+ ALRY+ P NDG IH Sbjct: 10 SPDISAAQPASALRYQLRPPRRNDGAAIH 38
>SYFA_NITMU (Q2YBS2) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 344 Score = 27.3 bits (59), Expect = 9.7 Identities = 21/69 (30%), Positives = 28/69 (40%) Frame = +2 Query: 86 FTVQDDPTGHK*RXQHSQFLKFTYIPIVYPYESYHLLLLXCW**S*SSPVQLLLMSSRPM 265 FT + P H R H F Y+ S HLL +SPVQ+ M S P Sbjct: 140 FTALNIPESHPARAMHDTF----YVDDENGGASEHLLRTH------TSPVQIRYMESNPP 189 Query: 266 PVTMSVAGK 292 P+ + G+ Sbjct: 190 PLKVIAPGR 198 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 43,636,641 Number of Sequences: 219361 Number of extensions: 794739 Number of successful extensions: 1600 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 1576 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1600 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
