Clone Information

BLAST Search Result

Clone Name	rbah62g14
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AF411229.2\| Hordeum vulgare gigantea-like protein mRNA, parti...	914	0.0
2	gb\|AY740524.1\| Hordeum vulgare subsp. vulgare gigantea-like prot...	815	0.0
3	gb\|AF543844.1\| Triticum aestivum gigantea (TaGI1) mRNA, complete...	496	e-137
4	gb\|AY740523.1\| Hordeum vulgare gigantea-like protein (GI) mRNA, ...	359	5e-96
5	gb\|AY679114.1\| Triticum aestivum gigantea 2 (TaGI2) mRNA, comple...	351	1e-93
6	gb\|AY679115.1\| Triticum aestivum gigantea 3 (TaGI3) mRNA, comple...	337	2e-89
7	ref\|XM_550413.1\| Oryza sativa (japonica cultivar-group), mRNA	151	2e-33
8	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	151	2e-33
9	dbj\|AP003047.2\| Oryza sativa (japonica cultivar-group) genomic D...	151	2e-33
10	dbj\|AK072166.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	151	2e-33
11	dbj\|AK067038.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	151	2e-33
12	ref\|XM_550414.1\| Oryza sativa (japonica cultivar-group), mRNA	135	1e-28
13	emb\|AJ133787.1\|OSA133787 Oryza sativa mRNA for gigantea homologu...	121	2e-24
14	gb\|CP000283.1\| Rhodopseudomonas palustris BisB5, complete genome	44	0.41
15	gb\|AC090016.11\| Homo sapiens 12q BAC RP11-730K16 (Roswell Park C...	42	1.6
16	gb\|AC172863.1\| Brassica rapa subsp. pekinensis clone KBrB070M24,...	42	1.6
17	gb\|AC117757.23\| Mus musculus chromosome 1, clone RP24-420I4, com...	40	6.4
18	ref\|NM_017183.1\| Rattus norvegicus interleukin 8 receptor, beta ...	40	6.4
19	gb\|AF030694.2\| Plasmodium falciparum strain Dd2 heat shock prote...	40	6.4
20	gb\|AC113473.20\| Mus musculus chromosome 1, clone RP23-280F6, com...	40	6.4
21	ref\|NM_009909.3\| Mus musculus interleukin 8 receptor, beta (Il8r...	40	6.4
22	gb\|AC125101.3\| Mus musculus BAC clone RP24-207F9 from chromosome...	40	6.4
23	gb\|BC051677.1\| Mus musculus interleukin 8 receptor, beta, mRNA (...	40	6.4
24	gb\|AF030691.1\| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG...	40	6.4
25	gb\|AF030690.1\| Plasmodium falciparum strain HB3 CG9 (cg9) and CG...	40	6.4
26	gb\|L26549.1\|MUSIL8R Mus musculus interleukin 8 receptor gene, co...	40	6.4
27	emb\|X77797.1\|RNIL8R R.norvegicus mRNA for interleukin-8 receptor	40	6.4
28	dbj\|AK158234.1\| Mus musculus adult inner ear cDNA, RIKEN full-le...	40	6.4
29	gb\|AC154389.1\| Mus musculus BAC clone RP23-2H9 from chromosome 1...	40	6.4
30	gb\|AF260819.1\|AF260819 Plasmodium falciparum CG1 protein gene, c...	40	6.4
31	gb\|AC157017.3\| Mus musculus 10 BAC RP24-559D16 (Roswell Park Can...	40	6.4
32	gb\|AC153966.4\| Mus musculus 10 BAC RP24-357P6 (Roswell Park Canc...	40	6.4
33	gb\|AE003788.5\| Drosophila melanogaster chromosome 2R, section 1 ...	40	6.4
34	dbj\|D17630.1\|MUSITLK8 Mus musculus IL-8R mRNA for interleukin-8 ...	40	6.4
35	gb\|U70988.1\|RNU70988 Rattus norvegicus CXC chemokine receptor (C...	40	6.4
36	gb\|U31207.1\|MMU31207 Mus musculus interleukin-8 receptor gene, c...	40	6.4
37	gb\|L13239.1\|MUSIL8GROA Mouse IL8/gro-alpha receptor gene, comple...	40	6.4
38	gb\|L23637.1\|MUSIL8RB Mouse interleukin-8 receptor type B (Il8rb)...	40	6.4
39	dbj\|D63584.1\|RATGMGSAR Rat gene for gro/MGSA receptor, complete cds	40	6.4

>gb|AF411229.2| Hordeum vulgare gigantea-like protein mRNA, partial cds
          Length = 2900

 Score =  914 bits (461), Expect = 0.0
 Identities = 461/461 (100%)
 Strand = Plus / Minus

                                                                        
Query: 13   atttaacatagcggacatcttactgttacatcatgaatacaagttacagcacaagcagtt 72
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2863 atttaacatagcggacatcttactgttacatcatgaatacaagttacagcacaagcagtt 2804

                                                                        
Query: 73   caatatgcttgaacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagc 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2803 caatatgcttgaacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaagc 2744

                                                                        
Query: 133  tccgtatgattgggaacatcagctaatatacatcacatcatggggggcagactgggaatg 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2743 tccgtatgattgggaacatcagctaatatacatcacatcatggggggcagactgggaatg 2684

                                                                        
Query: 193  gaaagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaact 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2683 gaaagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaact 2624

                                                                        
Query: 253  gctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatggccttgtcagcaag 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2623 gctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatggccttgtcagcaag 2564

                                                                        
Query: 313  gaagggggcagccgagctcgttagcagcagcggtgaggaaggcgagggtcatcccggtgg 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2563 gaagggggcagccgagctcgttagcagcagcggtgaggaaggcgagggtcatcccggtgg 2504

                                                                        
Query: 373  cacggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccg 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2503 cacggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccg 2444

                                                     
Query: 433  tgtttgctgccgcgcattggtagtttgggctttggatgccg 473
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2443 tgtttgctgccgcgcattggtagtttgggctttggatgccg 2403

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>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene,
            complete cds
          Length = 7682

 Score =  815 bits (411), Expect = 0.0
 Identities = 414/415 (99%)
 Strand = Plus / Minus

                                                                        
Query: 59   cagcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacac 118
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7681 cagcacaagcagttcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacac 7622

                                                                        
Query: 119  cgcgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggg 178
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7621 cgcgggagcaaagctccgtatgattgggaacatcagctaatatacatcacatcatggggg 7562

                                                                        
Query: 179  gcagactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctg 238
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7561 gcagactgggaatggaaagccatccttgagcaagggattaattagccatcctgctcgctg 7502

                                                                        
Query: 239  accatgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatg 298
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7501 accatgcagcaactgctcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatg 7442

                                                                        
Query: 299  gccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgag 358
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 7441 gccttgtcagcaaggaagggggcagcccagctcgttagcagcagcggtgaggaaggcgag 7382

                                                                        
Query: 359  ggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgc 418
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7381 ggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgc 7322

                                                                   
Query: 419  ttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgccg 473
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7321 ttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgccg 7267

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>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds
          Length = 4012

 Score =  496 bits (250), Expect = e-137
 Identities = 271/278 (97%)
 Strand = Plus / Minus

                                                                        
Query: 195  aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 254
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3775 aagccatccttgagcaagggattaattagccatcctgctcgctgaccatgcagcaactgc 3716

                                                                        
Query: 255  tcgcaccaactgtcaagtgttgctgattgtcagcttcaaatatggccttgtcagcaagga 314
            |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct: 3715 tcgcgccaactgtcaagtgtcgctgattgtcagctccaaatatggccttgtcagcaagga 3656

                                                                        
Query: 315  agggggcagccgagctcgttagcagcagcggtgaggaaggcgagggtcatcccggtggca 374
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| 
Sbjct: 3655 agggggcagccgagctcgttagccgcagcggtgaggaaggcgagggtcatcccggtggcg 3596

                                                                        
Query: 375  cggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtg 434
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3595 cggcggctgcgggcttcccagtctatacatctctcgacatccgcttgccagttcaccgtg 3536

                                                  
Query: 435  tttgctgccgcgcattggtagtttgggctttggatgcc 472
            ||||||||||||||||||||| | ||||||||||||||
Sbjct: 3535 tttgctgccgcgcattggtaggtcgggctttggatgcc 3498



 Score =  262 bits (132), Expect = 9e-67
 Identities = 151/156 (96%), Gaps = 1/156 (0%)
 Strand = Plus / Minus

                                                                        
Query: 13   atttaacatagcggacatcttactgttacatcatgaatacaagttacagcacaagcagtt 72
            ||||| ||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 3967 atttaccatagcggacatctttcggttacatcatgaatacaagttacagcacaagcagtt 3908

                                                                        
Query: 73   -caatatgcttgaacatctaacgtcagattgcaagttaaaatcacaccgcgggagcaaag 131
             |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 3907 tcaatatgcttgaacatctaacgtcagattgcaagttaaaatcacaccgggggagcaaag 3848

                                                
Query: 132  ctccgtatgattgggaacatcagctaatatacatca 167
            ||||||||||||||||||||||||||||||||||||
Sbjct: 3847 ctccgtatgattgggaacatcagctaatatacatca 3812

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>gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, complete cds
          Length = 3480

 Score =  359 bits (181), Expect = 5e-96
 Identities = 181/181 (100%)
 Strand = Plus / Minus

                                                                        
Query: 293  aatatggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaa 352
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3480 aatatggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaa 3421

                                                                        
Query: 353  ggcgagggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgac 412
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3420 ggcgagggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgac 3361

                                                                        
Query: 413  atccgcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3360 atccgcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 3301

             
Query: 473  g 473
            |
Sbjct: 3300 g 3300

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>gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, complete cds
          Length = 3543

 Score =  351 bits (177), Expect = 1e-93
 Identities = 192/197 (97%)
 Strand = Plus / Minus

                                                                        
Query: 276  gctgattgtcagcttcaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 335
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3530 gctgattgtcagctccaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 3471

                                                                        
Query: 336  gcagcagcggtgaggaaggcgagggtcatcccggtggcacggcggctgcgggcttcccag 395
            || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 3470 gccgcagcggtgaggaaggcgagggtcatcccggtggcgcggcggctgcgggcttcccag 3411

                                                                        
Query: 396  tctatacatctctcgacatccgcttgccagttcaccgtgtttgctgccgcgcattggtag 455
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3410 tctatacatctctcgacatccgcttgccagttcaccgtgtttgctgccgcgcattggtag 3351

                             
Query: 456  tttgggctttggatgcc 472
             | ||||||||||||||
Sbjct: 3350 gtcgggctttggatgcc 3334

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>gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, complete cds
          Length = 3548

 Score =  337 bits (170), Expect = 2e-89
 Identities = 191/198 (96%)
 Strand = Plus / Minus

                                                                        
Query: 276  gctgattgtcagcttcaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 335
            |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3536 gctgattgtcagctccaaatatggccttgtcagcaaggaagggggcagccgagctcgtta 3477

                                                                        
Query: 336  gcagcagcggtgaggaaggcgagggtcatcccggtggcacggcggctgcgggcttcccag 395
            || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3476 gccgcagcggtgaggaaggcgagggtcatcccggtggcgcgccggctgcgggcttcccag 3417

                                                                        
Query: 396  tctatacatctctcgacatccgcttgccagttcaccgtgtttgctgccgcgcattggtag 455
            |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 3416 tctatacatctctccacatccgcttgccagttcaccgtgtttgctgctgcgcattggtag 3357

                              
Query: 456  tttgggctttggatgccg 473
            || |||||||||||||||
Sbjct: 3356 ttcgggctttggatgccg 3339

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>ref|XM_550413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4184

 Score =  151 bits (76), Expect = 2e-33
 Identities = 151/176 (85%)
 Strand = Plus / Minus

                                                                        
Query: 297  tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 356
            ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 3928 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3869

                                                                        
Query: 357  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 416
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3868 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3809

                                                                    
Query: 417  gcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
            ||||||||||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 3808 gcttgccagttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 3753



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 49   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 98
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4155 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4105



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  ttgggaacatcagctaatat 161
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  151 bits (76), Expect = 2e-33
 Identities = 151/176 (85%)
 Strand = Plus / Plus

                                                                           
Query: 297     tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 356
               ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 4328717 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 4328776

                                                                           
Query: 357     agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 416
               || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 4328777 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 4328836

                                                                       
Query: 417     gcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
               ||||||||||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 4328837 gcttgccagttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 4328892



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                  
Query: 49      atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 98
               |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4328490 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4328540



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 142     ttgggaacatcagctaatat 161
               ||||||||||||||||||||
Sbjct: 4328604 ttgggaacatcagctaatat 4328623

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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score =  151 bits (76), Expect = 2e-33
 Identities = 151/176 (85%)
 Strand = Plus / Plus

                                                                          
Query: 297    tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 356
              ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 108487 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 108546

                                                                          
Query: 357    agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 416
              || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 108547 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 108606

                                                                      
Query: 417    gcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
              ||||||||||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 108607 gcttgccagttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 108662



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                                 
Query: 49     atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 98
              |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 108260 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 108310



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 142    ttgggaacatcagctaatat 161
              ||||||||||||||||||||
Sbjct: 108374 ttgggaacatcagctaatat 108393

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>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full
            insert sequence
          Length = 4252

 Score =  151 bits (76), Expect = 2e-33
 Identities = 151/176 (85%)
 Strand = Plus / Minus

                                                                        
Query: 297  tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 356
            ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 3897 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3838

                                                                        
Query: 357  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 416
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3837 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3778

                                                                    
Query: 417  gcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
            ||||||||||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 3777 gcttgccagttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 3722



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 49   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 98
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4124 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4074



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  ttgggaacatcagctaatat 161
            ||||||||||||||||||||
Sbjct: 4010 ttgggaacatcagctaatat 3991

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>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full
            insert sequence
          Length = 4185

 Score =  151 bits (76), Expect = 2e-33
 Identities = 151/176 (85%)
 Strand = Plus / Minus

                                                                        
Query: 297  tggccttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcg 356
            ||||||||||||||||  || |||||||||||||| || || || |||||||||||||||
Sbjct: 3928 tggccttgtcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcg 3869

                                                                        
Query: 357  agggtcatcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatcc 416
            || |||| ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| 
Sbjct: 3868 agcgtcagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcg 3809

                                                                    
Query: 417  gcttgccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
            ||||||||||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 3808 gcttgccagttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 3753



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 47/51 (92%), Gaps = 1/51 (1%)
 Strand = Plus / Minus

                                                               
Query: 49   atacaagttacagcacaagcag-ttcaatatgcttgaacatctaacgtcag 98
            |||||||||||||||||||||| ||  |||||||||||||||||| |||||
Sbjct: 4155 atacaagttacagcacaagcagttttcatatgcttgaacatctaatgtcag 4105



 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 142  ttgggaacatcagctaatat 161
            ||||||||||||||||||||
Sbjct: 4041 ttgggaacatcagctaatat 4022

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>ref|XM_550414.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 786

 Score =  135 bits (68), Expect = 1e-28
 Identities = 143/168 (85%)
 Strand = Plus / Minus

                                                                       
Query: 305 tcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgagggtcat 364
           ||||||||  || |||||||||||||| || || || ||||||||||||||||| |||| 
Sbjct: 786 tcagcaagtgagtgggcagccgagctccttcgccgccgcggtgaggaaggcgagcgtcag 727

                                                                       
Query: 365 cccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgcttgcca 424
           ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| ||||||||
Sbjct: 726 cccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcggcttgcca 667

                                                           
Query: 425 gttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
           ||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 666 gttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 619

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>emb|AJ133787.1|OSA133787 Oryza sativa mRNA for gigantea homologue, partial
          Length = 2931

 Score =  121 bits (61), Expect = 2e-24
 Identities = 144/171 (84%), Gaps = 3/171 (1%)
 Strand = Plus / Minus

                                                                        
Query: 302  ttgtcagcaaggaagggggcagccgagctcgttagcagcagcggtgaggaaggcgagggt 361
            |||||||||||  || |||||||||||||| ||    || ||||||||||||||||| ||
Sbjct: 2931 ttgtcagcaagtgagtgggcagccgagctcctt---cgccgcggtgaggaaggcgagcgt 2875

                                                                        
Query: 362  catcccggtggcacggcggctgcgggcttcccagtctatacatctctcgacatccgcttg 421
            || ||||||||| ||||||||| |||||||||| ||||| |||||||| ||||| |||||
Sbjct: 2874 cagcccggtggcgcggcggctgtgggcttcccactctatgcatctctccacatcggcttg 2815

                                                               
Query: 422  ccagttcaccgtgtttgctgccgcgcattggtagtttgggctttggatgcc 472
            |||||| |   || ||||||||  ||| |||||| ||||||| ||||||||
Sbjct: 2814 ccagttgatgatgcttgctgccaagcactggtaggttgggctctggatgcc 2764

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>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 236     ctgaccatgcagcaactgctcg 257
               ||||||||||||||||||||||
Sbjct: 2364775 ctgaccatgcagcaactgctcg 2364754

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>gb|AC090016.11| Homo sapiens 12q BAC RP11-730K16 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 121817

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 419   ttgccagttcaccgtgtttgctgcc 443
             |||||||||||||||| ||||||||
Sbjct: 29987 ttgccagttcaccgtggttgctgcc 29963

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>gb|AC172863.1| Brassica rapa subsp. pekinensis clone KBrB070M24, complete sequence
          Length = 97697

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 51    acaagttacagcacaagcagttcaa 75
             |||||| ||||||||||||||||||
Sbjct: 38227 acaagtcacagcacaagcagttcaa 38251

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>gb|AC117757.23| Mus musculus chromosome 1, clone RP24-420I4, complete sequence
          Length = 183087

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 295    tatggccttgtcagcaagga 314
              ||||||||||||||||||||
Sbjct: 165426 tatggccttgtcagcaagga 165445

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>ref|NM_017183.1| Rattus norvegicus interleukin 8 receptor, beta (Il8rb), mRNA
          Length = 1324

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1122 tatggccttgtcagcaagga 1141

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>gb|AF030694.2| Plasmodium falciparum strain Dd2 heat shock protein 86 (HSP86), O1
             (o1), O3 (o3), O2 (o2), CG8 (cg8), CG4 (cg4), CG3 (cg3),
             putative chloroquine resistance transporter (crt), CG9
             (cg9), CG1 (cg1), CG6 (cg6), CG2 (cg2), and CG7 (cg7)
             genes, complete cds
          Length = 47573

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 143   tgggaacatcagctaatata 162
             ||||||||||||||||||||
Sbjct: 30343 tgggaacatcagctaatata 30362

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>gb|AC113473.20| Mus musculus chromosome 1, clone RP23-280F6, complete sequence
          Length = 221025

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 295   tatggccttgtcagcaagga 314
             ||||||||||||||||||||
Sbjct: 68557 tatggccttgtcagcaagga 68576

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>ref|NM_009909.3| Mus musculus interleukin 8 receptor, beta (Il8rb), mRNA
          Length = 3043

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1136 tatggccttgtcagcaagga 1155

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>gb|AC125101.3| Mus musculus BAC clone RP24-207F9 from chromosome 19, complete sequence
          Length = 162162

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 46    tgaatacaagttacagcaca 65
             ||||||||||||||||||||
Sbjct: 22393 tgaatacaagttacagcaca 22412

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>gb|BC051677.1| Mus musculus interleukin 8 receptor, beta, mRNA (cDNA clone MGC:60615
            IMAGE:30023687), complete cds
          Length = 2842

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1109 tatggccttgtcagcaagga 1128

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>gb|AF030691.1| Plasmodium falciparum strain 7G8 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  tgggaacatcagctaatata 162
            ||||||||||||||||||||
Sbjct: 2118 tgggaacatcagctaatata 2137

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>gb|AF030690.1| Plasmodium falciparum strain HB3 CG9 (cg9) and CG1 (cg1) genes,
            complete cds
          Length = 4005

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  tgggaacatcagctaatata 162
            ||||||||||||||||||||
Sbjct: 2140 tgggaacatcagctaatata 2159

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>gb|L26549.1|MUSIL8R Mus musculus interleukin 8 receptor gene, complete cds
          Length = 2333

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 2089 tatggccttgtcagcaagga 2108

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>emb|X77797.1|RNIL8R R.norvegicus mRNA for interleukin-8 receptor
          Length = 1324

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1122 tatggccttgtcagcaagga 1141

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>dbj|AK158234.1| Mus musculus adult inner ear cDNA, RIKEN full-length enriched
            library, clone:F930044K23 product:interleukin 8 receptor,
            beta, full insert sequence
          Length = 2220

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1142 tatggccttgtcagcaagga 1161

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>gb|AC154389.1| Mus musculus BAC clone RP23-2H9 from chromosome 13, complete sequence
          Length = 215256

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 199    catccttgagcaagggattaattagccatcct 230
              ||||||| || |||||||| ||||||||||||
Sbjct: 139265 catccttaagtaagggattcattagccatcct 139296

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>gb|AF260819.1|AF260819 Plasmodium falciparum CG1 protein gene, complete cds
          Length = 2820

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 143  tgggaacatcagctaatata 162
            ||||||||||||||||||||
Sbjct: 1001 tgggaacatcagctaatata 1020

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>gb|AC157017.3| Mus musculus 10 BAC RP24-559D16 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 170093

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 262    aactgtcaagtgttgctgat 281
              ||||||||||||||||||||
Sbjct: 141816 aactgtcaagtgttgctgat 141835

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>gb|AC153966.4| Mus musculus 10 BAC RP24-357P6 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 155839

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 262   aactgtcaagtgttgctgat 281
             ||||||||||||||||||||
Sbjct: 67697 aactgtcaagtgttgctgat 67716

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>gb|AE003788.5| Drosophila melanogaster chromosome 2R, section 1 of 73 of the complete
             sequence
          Length = 585533

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 60    agcacaagcagttcaatatg 79
             ||||||||||||||||||||
Sbjct: 12103 agcacaagcagttcaatatg 12084

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>dbj|D17630.1|MUSITLK8 Mus musculus IL-8R mRNA for interleukin-8 receptor, complete cds
          Length = 1858

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1132 tatggccttgtcagcaagga 1151

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>gb|U70988.1|RNU70988 Rattus norvegicus CXC chemokine receptor (CXCR2) gene, complete cds
          Length = 1269

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1152 tatggccttgtcagcaagga 1171

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>gb|U31207.1|MMU31207 Mus musculus interleukin-8 receptor gene, complete cds
          Length = 1961

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1107 tatggccttgtcagcaagga 1126

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>gb|L13239.1|MUSIL8GROA Mouse IL8/gro-alpha receptor gene, complete cds
          Length = 1080

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 991  tatggccttgtcagcaagga 1010

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>gb|L23637.1|MUSIL8RB Mouse interleukin-8 receptor type B (Il8rb) gene, complete cds
          Length = 3450

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 2086 tatggccttgtcagcaagga 2105

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>dbj|D63584.1|RATGMGSAR Rat gene for gro/MGSA receptor, complete cds
          Length = 1460

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 295  tatggccttgtcagcaagga 314
            ||||||||||||||||||||
Sbjct: 1311 tatggccttgtcagcaagga 1330


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,520,721
Number of Sequences: 3902068
Number of extensions: 3520721
Number of successful extensions: 59349
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 59234
Number of HSP's gapped (non-prelim): 109
length of query: 475
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 453
effective length of database: 17,147,199,772
effective search space: 7767681496716
effective search space used: 7767681496716
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result